Wall clock time and date at job start Mon Mar 30 2020 01:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 120.00159 * 2 1 4 4 H 1.48498 * 109.47154 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46887 * 299.99698 * 3 2 1 6 6 H 1.48490 * 109.47257 * 59.99682 * 3 2 1 7 7 C 1.37879 * 120.00135 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00396 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99924 * 0.02562 * 7 2 1 10 10 C 1.53513 * 114.17177 * 179.97438 * 9 7 2 11 11 N 1.47480 * 87.93340 * 220.13669 * 10 9 7 12 12 C 1.46899 * 110.99530 * 138.70282 * 11 10 9 13 13 C 1.50706 * 109.47038 * 170.00546 * 12 11 10 14 14 C 1.38584 * 120.41831 * 104.72270 * 13 12 11 15 15 C 1.38644 * 118.46587 * 179.78434 * 14 13 12 16 16 C 1.38309 * 119.21048 * 0.48854 * 15 14 13 17 17 Cl 1.73598 * 119.61670 * 179.76905 * 16 15 14 18 18 N 1.31999 * 120.76755 * 359.75167 * 16 15 14 19 19 C 1.32086 * 121.66635 * 0.02562 * 18 16 15 20 20 F 1.35102 * 119.63669 * 179.97438 * 19 18 16 21 21 C 1.47486 * 87.83280 * 27.01512 * 11 10 9 22 22 H 0.96998 * 119.99878 * 0.02562 * 1 2 3 23 23 H 1.09001 * 113.25669 * 312.95318 * 9 7 2 24 24 H 1.09007 * 113.47063 * 105.37513 * 10 9 7 25 25 H 1.08994 * 113.53210 * 334.92069 * 10 9 7 26 26 H 1.09002 * 109.47468 * 50.00291 * 12 11 10 27 27 H 1.09005 * 109.47502 * 290.00073 * 12 11 10 28 28 H 1.08006 * 120.76144 * 0.02562 * 14 13 12 29 29 H 1.08003 * 120.39246 * 180.21862 * 15 14 13 30 30 H 1.08997 * 113.47892 * 87.75490 * 21 11 10 31 31 H 1.09007 * 113.46956 * 218.22381 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.1496 -3.7438 0.0005 11 7 1.2049 -4.3603 -0.9495 12 6 1.9206 -5.0902 -2.0045 13 6 0.9383 -5.9039 -2.8073 14 6 0.5571 -5.4928 -4.0747 15 6 -0.3455 -6.2746 -4.7792 16 6 -0.8411 -7.4261 -4.1950 17 17 -1.9764 -8.4095 -5.0654 18 7 -0.4606 -7.7862 -2.9834 19 6 0.4007 -7.0683 -2.2851 20 9 0.7614 -7.4750 -1.0483 21 6 0.8518 -2.9993 -1.3949 22 1 -0.4850 0.8400 -0.0004 23 1 0.4446 -2.5306 0.7332 24 1 2.1888 -4.2510 0.9646 25 1 3.1382 -3.5668 -0.4230 26 1 2.6575 -5.7536 -1.5517 27 1 2.4251 -4.3800 -2.6597 28 1 0.9570 -4.5866 -4.5051 29 1 -0.6612 -5.9854 -5.7708 30 1 1.4937 -2.6228 -2.1912 31 1 -0.2089 -2.8756 -1.6134 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137470989.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:18 Heat of formation + Delta-G solvation = 22.827194 kcal Electronic energy + Delta-G solvation = -17822.030267 eV Core-core repulsion = 14659.161730 eV Total energy + Delta-G solvation = -3162.868537 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.063 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.93467 -40.34743 -38.91616 -36.86191 -33.80114 -32.59905 -31.61494 -28.74475 -25.91029 -24.89274 -23.85864 -23.51562 -21.51585 -18.74000 -18.22241 -17.61646 -16.79691 -16.16896 -15.87636 -15.10171 -14.89722 -14.37775 -14.13987 -13.98661 -13.85188 -13.29381 -13.24635 -12.68589 -12.05573 -11.73414 -11.64382 -11.51007 -11.23239 -11.05561 -10.66134 -10.45809 -10.15148 -10.08525 -9.79120 -9.38411 -9.04275 -8.78188 -8.50353 -8.14944 -6.11810 -4.17016 0.62608 0.87699 1.48647 3.23269 3.27275 3.32243 3.35156 3.58930 4.32713 4.36633 4.51022 4.63317 4.84385 5.02091 5.18416 5.31077 5.55086 5.64528 5.67410 5.85436 6.01319 6.23173 6.31919 6.35487 6.59134 6.60474 7.03032 7.03771 7.24089 7.65837 7.81270 7.94314 8.29352 8.86959 9.48725 10.97703 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.033301 B = 0.004011 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.608111 B = 6978.341994 C = 7412.906133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.067 3.933 3 Si 0.891 3.109 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.517 4.517 8 H 0.059 0.941 9 C 0.042 3.958 10 C -0.003 4.003 11 N -0.480 5.480 12 C 0.058 3.942 13 C -0.128 4.128 14 C -0.032 4.032 15 C -0.164 4.164 16 C 0.201 3.799 17 Cl -0.027 7.027 18 N -0.515 5.515 19 C 0.346 3.654 20 F -0.096 7.096 21 C 0.003 3.997 22 H 0.262 0.738 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.057 0.943 26 H 0.081 0.919 27 H 0.061 0.939 28 H 0.156 0.844 29 H 0.153 0.847 30 H 0.056 0.944 31 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.754 -11.960 -10.630 16.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.136 4.136 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.556 4.556 8 H 0.077 0.923 9 C 0.023 3.977 10 C -0.131 4.131 11 N -0.202 5.202 12 C -0.071 4.071 13 C -0.132 4.132 14 C -0.058 4.058 15 C -0.185 4.185 16 C 0.036 3.964 17 Cl 0.001 6.999 18 N -0.232 5.232 19 C 0.193 3.807 20 F -0.075 7.075 21 C -0.125 4.125 22 H 0.072 0.928 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.075 0.925 26 H 0.100 0.900 27 H 0.080 0.920 28 H 0.173 0.827 29 H 0.170 0.830 30 H 0.074 0.926 31 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.322 -13.196 -10.065 16.599 hybrid contribution 1.211 1.800 -0.615 2.255 sum 0.889 -11.395 -10.680 15.643 Atomic orbital electron populations 1.69974 1.06022 1.26738 1.49480 1.25023 0.94809 0.99215 0.94526 0.86559 0.80164 0.83717 0.77702 1.19694 1.20987 1.20862 1.21057 0.92791 0.90149 1.51568 0.92289 1.20093 0.94322 0.90833 0.92452 1.24030 0.95684 0.97550 0.95882 1.68965 1.27265 1.14428 1.09581 1.21564 0.93454 0.97343 0.94699 1.20779 1.01144 0.95180 0.96063 1.21490 0.93577 0.98471 0.92266 1.21816 0.99672 0.94424 1.02596 1.21107 0.94103 0.91604 0.89546 1.98410 1.58213 1.70719 1.72544 1.66109 1.14438 1.34762 1.07863 1.17536 0.92033 0.89890 0.81285 1.91666 1.88680 1.90195 1.36981 1.24179 1.00325 0.86394 1.01634 0.92847 0.91702 0.91651 0.92506 0.90026 0.92042 0.82684 0.82975 0.92618 0.91779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.88 13.26 55.43 0.74 -24.15 16 2 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 3 Si 0.89 20.39 29.54 -169.99 -5.02 15.37 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.52 -13.54 8.83 -34.44 -0.30 -13.84 16 8 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 9 C 0.04 1.01 3.76 -91.24 -0.34 0.67 16 10 C 0.00 -0.06 7.24 -7.55 -0.05 -0.12 16 11 N -0.48 -9.19 6.32 -246.08 -1.55 -10.75 16 12 C 0.06 0.89 4.65 -4.97 -0.02 0.87 16 13 C -0.13 -1.83 5.49 -104.40 -0.57 -2.41 16 14 C -0.03 -0.37 9.80 -39.30 -0.39 -0.76 16 15 C -0.16 -1.78 9.87 -39.41 -0.39 -2.17 16 16 C 0.20 2.61 7.27 -17.45 -0.13 2.48 16 17 Cl -0.03 -0.30 29.11 -51.86 -1.51 -1.81 16 18 N -0.52 -8.01 10.35 -10.70 -0.11 -8.12 16 19 C 0.35 5.48 8.36 -17.35 -0.15 5.33 16 20 F -0.10 -1.62 16.79 2.25 0.04 -1.58 16 21 C 0.00 0.07 7.28 -7.54 -0.05 0.02 16 22 H 0.26 6.98 8.31 -40.82 -0.34 6.65 16 23 H 0.06 1.74 8.11 -51.93 -0.42 1.32 16 24 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 25 H 0.06 1.08 7.87 -51.93 -0.41 0.67 16 26 H 0.08 1.17 8.03 -51.93 -0.42 0.76 16 27 H 0.06 0.87 7.16 -51.93 -0.37 0.50 16 28 H 0.16 1.45 8.05 -52.48 -0.42 1.03 16 29 H 0.15 1.17 8.06 -52.48 -0.42 0.74 16 30 H 0.06 1.16 7.38 -51.93 -0.38 0.77 16 31 H 0.06 1.46 8.14 -51.93 -0.42 1.04 16 LS Contribution 291.77 15.07 4.40 4.40 Total: -1.00 -28.52 291.77 -8.76 -37.28 By element: Atomic # 1 Polarization: 0.81 SS G_CDS: -3.24 Total: -2.42 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: -2.50 Total: -8.21 kcal Atomic # 7 Polarization: -42.09 SS G_CDS: -0.93 Total: -43.02 kcal Atomic # 9 Polarization: -1.62 SS G_CDS: 0.04 Total: -1.58 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Atomic # 17 Polarization: -0.30 SS G_CDS: -1.51 Total: -1.81 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -28.52 -8.76 -37.28 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137470989.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.111 kcal (2) G-P(sol) polarization free energy of solvation -28.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds