Wall clock time and date at job start Mon Mar 30 2020 01:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 120.00159 * 2 1 4 4 H 1.48498 * 109.47154 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46887 * 299.99698 * 3 2 1 6 6 H 1.48490 * 109.47257 * 59.99682 * 3 2 1 7 7 C 1.37879 * 120.00135 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00396 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99924 * 0.02562 * 7 2 1 10 10 C 1.53513 * 114.17177 * 179.97438 * 9 7 2 11 11 N 1.47480 * 87.93340 * 220.13669 * 10 9 7 12 12 C 1.46899 * 110.99530 * 138.70282 * 11 10 9 13 13 C 1.50706 * 109.47038 * 170.00546 * 12 11 10 14 14 C 1.38584 * 120.41831 * 104.72270 * 13 12 11 15 15 C 1.38644 * 118.46587 * 179.78434 * 14 13 12 16 16 C 1.38309 * 119.21048 * 0.48854 * 15 14 13 17 17 Cl 1.73598 * 119.61670 * 179.76905 * 16 15 14 18 18 N 1.31999 * 120.76755 * 359.75167 * 16 15 14 19 19 C 1.32086 * 121.66635 * 0.02562 * 18 16 15 20 20 F 1.35102 * 119.63669 * 179.97438 * 19 18 16 21 21 C 1.47486 * 87.83280 * 27.01512 * 11 10 9 22 22 H 0.96998 * 119.99878 * 0.02562 * 1 2 3 23 23 H 1.09001 * 113.25669 * 312.95318 * 9 7 2 24 24 H 1.09007 * 113.47063 * 105.37513 * 10 9 7 25 25 H 1.08994 * 113.53210 * 334.92069 * 10 9 7 26 26 H 1.09002 * 109.47468 * 50.00291 * 12 11 10 27 27 H 1.09005 * 109.47502 * 290.00073 * 12 11 10 28 28 H 1.08006 * 120.76144 * 0.02562 * 14 13 12 29 29 H 1.08003 * 120.39246 * 180.21862 * 15 14 13 30 30 H 1.08997 * 113.47892 * 87.75490 * 21 11 10 31 31 H 1.09007 * 113.46956 * 218.22381 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.1496 -3.7438 0.0005 11 7 1.2049 -4.3603 -0.9495 12 6 1.9206 -5.0902 -2.0045 13 6 0.9383 -5.9039 -2.8073 14 6 0.5571 -5.4928 -4.0747 15 6 -0.3455 -6.2746 -4.7792 16 6 -0.8411 -7.4261 -4.1950 17 17 -1.9764 -8.4095 -5.0654 18 7 -0.4606 -7.7862 -2.9834 19 6 0.4007 -7.0683 -2.2851 20 9 0.7614 -7.4750 -1.0483 21 6 0.8518 -2.9993 -1.3949 22 1 -0.4850 0.8400 -0.0004 23 1 0.4446 -2.5306 0.7332 24 1 2.1888 -4.2510 0.9646 25 1 3.1382 -3.5668 -0.4230 26 1 2.6575 -5.7536 -1.5517 27 1 2.4251 -4.3800 -2.6597 28 1 0.9570 -4.5866 -4.5051 29 1 -0.6612 -5.9854 -5.7708 30 1 1.4937 -2.6228 -2.1912 31 1 -0.2089 -2.8756 -1.6134 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137470989.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:18 Heat of formation + Delta-G solvation = 3.978009 kcal Electronic energy + Delta-G solvation = -17822.847629 eV Core-core repulsion = 14659.161730 eV Total energy + Delta-G solvation = -3163.685899 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.063 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -50.12071 -41.44341 -40.45331 -37.79484 -35.17839 -34.27331 -32.74505 -30.23667 -27.53826 -26.54415 -24.99206 -24.88418 -22.81970 -20.48126 -19.29384 -18.70968 -18.65463 -17.35743 -16.96109 -16.68234 -16.32501 -15.97187 -15.73656 -15.05230 -14.91596 -14.67433 -14.33625 -13.96425 -13.84889 -13.24600 -12.97786 -12.85460 -12.64869 -12.43856 -12.32684 -12.05927 -11.72697 -11.30768 -11.02493 -11.01734 -10.83896 -10.49733 -9.88844 -9.70000 -8.13384 -6.24845 -0.39573 -0.11071 0.53507 1.43807 1.46777 1.57537 2.24352 2.44577 2.53741 3.16398 3.24410 3.44620 3.54467 3.79560 3.82928 4.22076 4.35228 4.42818 4.50308 4.60503 4.71695 4.73955 4.85655 4.90009 4.97750 5.25931 5.31465 5.46996 5.65256 5.86192 6.20639 6.29331 6.36435 6.85615 7.44352 8.96562 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.033301 B = 0.004011 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.608111 B = 6978.341994 C = 7412.906133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.016 3.984 3 Si 0.957 3.043 4 H -0.262 1.262 5 H -0.280 1.280 6 H -0.285 1.285 7 C -0.527 4.527 8 H 0.063 0.937 9 C 0.018 3.982 10 C 0.012 3.988 11 N -0.487 5.487 12 C 0.060 3.940 13 C -0.139 4.139 14 C -0.025 4.025 15 C -0.147 4.147 16 C 0.188 3.812 17 Cl -0.014 7.014 18 N -0.542 5.542 19 C 0.322 3.678 20 F -0.113 7.113 21 C 0.021 3.979 22 H 0.262 0.738 23 H 0.024 0.976 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.091 0.909 27 H 0.081 0.919 28 H 0.185 0.815 29 H 0.191 0.809 30 H 0.067 0.933 31 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.849 -11.673 -12.632 17.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.184 4.184 3 Si 0.783 3.217 4 H -0.186 1.186 5 H -0.205 1.205 6 H -0.211 1.211 7 C -0.565 4.565 8 H 0.081 0.919 9 C -0.001 4.001 10 C -0.116 4.116 11 N -0.209 5.209 12 C -0.068 4.068 13 C -0.143 4.143 14 C -0.051 4.051 15 C -0.167 4.167 16 C 0.024 3.976 17 Cl 0.015 6.985 18 N -0.259 5.259 19 C 0.168 3.832 20 F -0.092 7.092 21 C -0.108 4.108 22 H 0.071 0.929 23 H 0.042 0.958 24 H 0.087 0.913 25 H 0.091 0.909 26 H 0.109 0.891 27 H 0.099 0.901 28 H 0.202 0.798 29 H 0.208 0.792 30 H 0.085 0.915 31 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 0.786 -12.928 -12.071 17.705 hybrid contribution 0.812 1.617 -0.046 1.809 sum 1.597 -11.312 -12.116 16.653 Atomic orbital electron populations 1.70105 1.07613 1.27484 1.50995 1.25814 0.95514 1.02674 0.94367 0.85522 0.79267 0.79456 0.77497 1.18612 1.20550 1.21063 1.21397 0.93113 0.91173 1.50805 0.91881 1.20040 0.94490 0.92195 0.93401 1.23851 0.95723 0.95347 0.96701 1.68867 1.27999 1.13285 1.10734 1.21581 0.93671 0.97485 0.94079 1.20768 1.01542 0.94765 0.97184 1.21885 0.92904 0.99151 0.91109 1.22230 0.97997 0.92785 1.03699 1.21536 0.94369 0.92562 0.89108 1.98415 1.57663 1.70543 1.71908 1.66057 1.15043 1.35657 1.09159 1.17754 0.93242 0.90941 0.81228 1.91615 1.89010 1.90502 1.38044 1.23879 0.99189 0.87682 1.00057 0.92923 0.95784 0.91274 0.90893 0.89101 0.90127 0.79768 0.79202 0.91538 0.93859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.79 13.26 21.45 0.28 -52.51 16 2 C 0.02 0.83 5.46 84.66 0.46 1.30 16 3 Si 0.96 41.58 29.54 68.60 2.03 43.60 16 4 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 5 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 6 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 7 C -0.53 -27.48 8.83 25.60 0.23 -27.26 16 8 H 0.06 3.16 7.81 -2.91 -0.02 3.14 16 9 C 0.02 0.87 3.76 -11.19 -0.04 0.83 16 10 C 0.01 0.48 7.24 83.57 0.61 1.08 16 11 N -0.49 -18.23 6.32 -932.46 -5.89 -24.12 16 12 C 0.06 1.72 4.65 85.56 0.40 2.12 16 13 C -0.14 -3.74 5.49 -19.72 -0.11 -3.85 16 14 C -0.02 -0.50 9.80 22.45 0.22 -0.28 16 15 C -0.15 -2.69 9.87 22.38 0.22 -2.47 16 16 C 0.19 4.54 7.27 84.68 0.62 5.16 16 17 Cl -0.01 -0.28 29.11 -2.72 -0.08 -0.36 16 18 N -0.54 -16.52 10.35 -187.76 -1.94 -18.47 16 19 C 0.32 10.03 8.36 84.71 0.71 10.74 16 20 F -0.11 -3.84 16.79 44.97 0.75 -3.08 16 21 C 0.02 0.89 7.28 83.57 0.61 1.50 16 22 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 23 H 0.02 1.35 8.11 -2.39 -0.02 1.33 16 24 H 0.07 2.64 8.14 -2.38 -0.02 2.62 16 25 H 0.07 2.62 7.87 -2.39 -0.02 2.60 16 26 H 0.09 2.44 8.03 -2.39 -0.02 2.42 16 27 H 0.08 2.02 7.16 -2.38 -0.02 2.00 16 28 H 0.19 2.62 8.05 -2.91 -0.02 2.60 16 29 H 0.19 2.01 8.06 -2.91 -0.02 1.98 16 30 H 0.07 2.65 7.38 -2.39 -0.02 2.63 16 31 H 0.04 1.99 8.14 -2.38 -0.02 1.97 16 Total: -1.00 -62.53 291.77 0.22 -62.31 By element: Atomic # 1 Polarization: 2.60 SS G_CDS: 1.15 Total: 3.75 kcal Atomic # 6 Polarization: -15.04 SS G_CDS: 3.92 Total: -11.13 kcal Atomic # 7 Polarization: -87.55 SS G_CDS: -7.55 Total: -95.10 kcal Atomic # 9 Polarization: -3.84 SS G_CDS: 0.75 Total: -3.08 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.60 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -0.08 Total: -0.36 kcal Total: -62.53 0.22 -62.31 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137470989.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.293 kcal (2) G-P(sol) polarization free energy of solvation -62.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds