Wall clock time and date at job start Mon Mar 30 2020 01:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 119.99936 * 2 1 4 4 H 1.48493 * 109.47168 * 269.99907 * 3 2 1 5 5 H 1.48503 * 109.47112 * 30.00155 * 3 2 1 6 6 H 1.48497 * 109.47109 * 149.99602 * 3 2 1 7 7 C 1.37878 * 119.99954 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99559 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00037 * 359.97438 * 7 2 1 10 10 C 1.53514 * 114.16914 * 180.02562 * 9 7 2 11 11 N 1.47487 * 87.93338 * 220.13906 * 10 9 7 12 12 C 1.46900 * 111.00072 * 138.70093 * 11 10 9 13 13 C 1.50693 * 109.47107 * 170.00445 * 12 11 10 14 14 C 1.38588 * 120.79053 * 259.71576 * 13 12 11 15 15 C 1.38343 * 119.18005 * 180.27280 * 14 13 12 16 16 Cl 1.73601 * 119.60590 * 180.02562 * 15 14 13 17 17 N 1.31966 * 120.78981 * 0.02562 * 15 14 13 18 18 C 1.31872 * 121.72951 * 359.97438 * 17 15 14 19 19 C 1.38413 * 120.74398 * 0.02562 * 18 17 15 20 20 F 1.35101 * 120.43081 * 179.97438 * 19 18 17 21 21 C 1.47481 * 87.83144 * 27.01271 * 11 10 9 22 22 H 0.97002 * 120.00215 * 0.02562 * 1 2 3 23 23 H 1.08996 * 113.26409 * 312.95272 * 9 7 2 24 24 H 1.09003 * 113.47823 * 105.37896 * 10 9 7 25 25 H 1.08997 * 113.53048 * 334.91414 * 10 9 7 26 26 H 1.09007 * 109.47004 * 49.99773 * 12 11 10 27 27 H 1.09003 * 109.47045 * 290.00655 * 12 11 10 28 28 H 1.08006 * 120.40687 * 0.30437 * 14 13 12 29 29 H 1.07998 * 119.62849 * 179.97438 * 18 17 15 30 30 H 1.08999 * 113.48250 * 87.75781 * 21 11 10 31 31 H 1.09007 * 113.47491 * 218.22467 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.1497 -3.7437 0.0028 11 7 1.2050 -4.3610 -0.9468 12 6 1.9206 -5.0919 -2.0012 13 6 0.9384 -5.9062 -2.8031 14 6 0.7878 -7.2644 -2.5726 15 6 -0.1196 -7.9810 -3.3322 16 17 -0.3177 -9.6828 -3.0523 17 7 -0.8364 -7.3863 -4.2672 18 6 -0.7201 -6.0962 -4.5147 19 6 0.1672 -5.3148 -3.7951 20 9 0.2816 -3.9939 -4.0543 21 6 0.8518 -3.0005 -1.3932 22 1 -0.4850 0.8400 -0.0004 23 1 0.4452 -2.5303 0.7349 24 1 2.1889 -4.2501 0.9673 25 1 3.1382 -3.5671 -0.4210 26 1 2.6576 -5.7548 -1.5477 27 1 2.4251 -4.3822 -2.6569 28 1 1.3712 -7.7573 -1.8089 29 1 -1.3234 -5.6445 -5.2882 30 1 1.4937 -2.6245 -2.1900 31 1 -0.2089 -2.8769 -1.6119 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140603158.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:32 Heat of formation + Delta-G solvation = 0.121353 kcal Electronic energy + Delta-G solvation = -17964.897187 eV Core-core repulsion = 14801.044050 eV Total energy + Delta-G solvation = -3163.853136 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.063 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -50.11345 -41.43981 -40.50944 -37.74085 -35.35373 -34.33261 -31.82757 -30.76061 -27.79799 -26.61598 -25.15405 -24.70739 -22.78708 -20.53157 -18.91160 -18.81412 -18.42529 -17.86386 -17.21292 -16.61632 -16.21276 -15.74814 -15.62234 -15.36614 -15.16992 -15.00937 -14.17396 -13.94390 -13.71214 -13.33947 -13.06831 -12.84826 -12.68052 -12.45565 -12.39393 -12.08356 -11.74105 -11.40953 -10.96537 -10.92187 -10.73818 -10.49132 -9.94835 -9.78992 -8.15523 -6.27040 -0.41228 -0.19761 0.63488 1.43040 1.44038 1.54259 2.25378 2.42701 2.87691 3.10630 3.14763 3.32870 3.52027 3.60787 3.74877 4.08693 4.23111 4.35060 4.45124 4.54241 4.55564 4.66649 4.77375 4.86552 4.95367 5.21701 5.28180 5.39606 5.62038 5.83749 6.24395 6.30309 6.37037 6.83072 7.42052 8.94350 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.039067 B = 0.004148 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.551759 B = 6749.386851 C = 7129.472124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.015 3.985 3 Si 0.957 3.043 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.263 1.263 7 C -0.530 4.530 8 H 0.063 0.937 9 C 0.017 3.983 10 C 0.014 3.986 11 N -0.479 5.479 12 C 0.053 3.947 13 C -0.049 4.049 14 C -0.106 4.106 15 C 0.153 3.847 16 Cl -0.013 7.013 17 N -0.470 5.470 18 C 0.096 3.904 19 C 0.045 3.955 20 F -0.130 7.130 21 C 0.024 3.976 22 H 0.262 0.738 23 H 0.029 0.971 24 H 0.082 0.918 25 H 0.070 0.930 26 H 0.116 0.884 27 H 0.058 0.942 28 H 0.179 0.821 29 H 0.200 0.800 30 H 0.052 0.948 31 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.826 -15.332 -7.423 17.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.185 4.185 3 Si 0.782 3.218 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.187 1.187 7 C -0.568 4.568 8 H 0.081 0.919 9 C -0.002 4.002 10 C -0.114 4.114 11 N -0.201 5.201 12 C -0.075 4.075 13 C -0.059 4.059 14 C -0.127 4.127 15 C -0.010 4.010 16 Cl 0.016 6.984 17 N -0.181 5.181 18 C -0.062 4.062 19 C 0.022 3.978 20 F -0.108 7.108 21 C -0.105 4.105 22 H 0.071 0.929 23 H 0.047 0.953 24 H 0.100 0.900 25 H 0.088 0.912 26 H 0.135 0.865 27 H 0.076 0.924 28 H 0.196 0.804 29 H 0.217 0.783 30 H 0.070 0.930 31 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 1.580 -16.329 -7.667 18.108 hybrid contribution 1.127 2.157 0.004 2.433 sum 2.707 -14.172 -7.663 16.337 Atomic orbital electron populations 1.70097 1.07628 1.27577 1.50850 1.25836 0.95554 1.02775 0.94315 0.85573 0.78866 0.79079 0.78269 1.20153 1.21113 1.18682 1.21381 0.93133 0.91305 1.50984 0.91887 1.20072 0.94697 0.92409 0.93014 1.23858 0.95430 0.95200 0.96887 1.68863 1.27793 1.13027 1.10457 1.21678 0.94094 0.97811 0.93897 1.20423 0.96848 0.94538 0.94063 1.21840 0.98627 0.92029 1.00220 1.21826 0.95438 0.88859 0.94914 1.98409 1.96698 1.08801 1.94525 1.67099 1.23249 1.10799 1.16949 1.23055 0.96209 0.87640 0.99308 1.19021 1.00360 0.79329 0.99048 1.91560 1.94844 1.31402 1.93043 1.23817 0.98682 0.88094 0.99892 0.92904 0.95271 0.89977 0.91156 0.86537 0.92351 0.80383 0.78315 0.92970 0.94432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.95 13.26 21.45 0.28 -53.66 16 2 C 0.01 0.80 5.46 84.66 0.46 1.26 16 3 Si 0.96 42.58 29.54 68.60 2.03 44.61 16 4 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 7 C -0.53 -28.29 8.83 25.60 0.23 -28.06 16 8 H 0.06 3.22 7.81 -2.91 -0.02 3.20 16 9 C 0.02 0.85 3.76 -11.20 -0.04 0.81 16 10 C 0.01 0.55 7.25 83.57 0.61 1.16 16 11 N -0.48 -17.83 6.32 -932.46 -5.89 -23.72 16 12 C 0.05 1.53 4.77 85.55 0.41 1.94 16 13 C -0.05 -1.34 5.51 -19.63 -0.11 -1.44 16 14 C -0.11 -2.39 9.54 22.38 0.21 -2.17 16 15 C 0.15 3.62 7.27 84.70 0.62 4.23 16 16 Cl -0.01 -0.26 29.11 -2.72 -0.08 -0.34 16 17 N -0.47 -11.99 10.34 -186.54 -1.93 -13.92 16 18 C 0.10 2.34 11.17 84.73 0.95 3.29 16 19 C 0.04 1.26 7.29 22.46 0.16 1.43 16 20 F -0.13 -4.25 15.40 44.97 0.69 -3.56 16 21 C 0.02 1.11 6.00 83.57 0.50 1.61 16 22 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 23 H 0.03 1.63 8.11 -2.39 -0.02 1.61 16 24 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 25 H 0.07 2.51 7.87 -2.39 -0.02 2.49 16 26 H 0.12 2.62 7.98 -2.38 -0.02 2.60 16 27 H 0.06 1.76 7.18 -2.39 -0.02 1.75 16 28 H 0.18 3.00 8.06 -2.91 -0.02 2.98 16 29 H 0.20 3.65 8.06 -2.91 -0.02 3.62 16 30 H 0.05 2.39 7.28 -2.39 -0.02 2.37 16 31 H 0.04 1.86 8.14 -2.38 -0.02 1.84 16 Total: -1.00 -61.28 289.07 0.25 -61.04 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: 1.15 Total: 5.50 kcal Atomic # 6 Polarization: -19.94 SS G_CDS: 3.99 Total: -15.95 kcal Atomic # 7 Polarization: -83.77 SS G_CDS: -7.53 Total: -91.30 kcal Atomic # 9 Polarization: -4.25 SS G_CDS: 0.69 Total: -3.56 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Atomic # 17 Polarization: -0.26 SS G_CDS: -0.08 Total: -0.34 kcal Total: -61.28 0.25 -61.04 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140603158.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.158 kcal (2) G-P(sol) polarization free energy of solvation -61.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds