Wall clock time and date at job start Mon Mar 30 2020 00:48:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42896 * 1
3 3 C 1.34960 * 117.00324 * 2 1
4 4 O 1.21703 * 119.99806 * 359.97438 * 3 2 1
5 5 C 1.41536 * 120.00323 * 180.02562 * 3 2 1
6 6 S 1.76202 * 126.19710 * 0.04216 * 5 3 2
7 7 C 1.70877 * 90.48045 * 179.97438 * 6 5 3
8 8 N 1.29279 * 110.83111 * 359.73283 * 7 6 5
9 9 C 1.31421 * 117.45720 * 0.50097 * 8 7 6
10 10 N 1.39187 * 123.18642 * 179.75483 * 9 8 7
11 11 C 1.34777 * 119.99864 * 359.42556 * 10 9 8
12 12 O 1.21283 * 120.00222 * 0.28196 * 11 10 9
13 13 C 1.50703 * 120.00290 * 180.27756 * 11 10 9
14 14 C 1.50701 * 109.47355 * 180.02562 * 13 11 10
15 15 H 1.08000 * 119.99624 * 0.02562 * 14 13 11
16 16 C 1.37872 * 119.99634 * 179.97438 * 14 13 11
17 17 N 1.31515 * 120.00230 * 0.02562 * 16 14 13
18 18 Si 1.86803 * 119.99703 * 180.02562 * 16 14 13
19 19 H 1.48504 * 109.46919 * 60.00153 * 18 16 14
20 20 H 1.48496 * 109.47105 * 180.02562 * 18 16 14
21 21 H 1.48501 * 109.47194 * 300.00217 * 18 16 14
22 22 H 1.09003 * 109.47170 * 300.00065 * 1 2 3
23 23 H 1.09003 * 109.46824 * 60.00228 * 1 2 3
24 24 H 1.08997 * 109.47469 * 179.97438 * 1 2 3
25 25 H 1.07998 * 124.58460 * 179.97438 * 7 6 5
26 26 H 0.97001 * 120.00348 * 179.71031 * 10 9 8
27 27 H 1.08998 * 109.46954 * 300.00581 * 13 11 10
28 28 H 1.09002 * 109.46946 * 59.99717 * 13 11 10
29 29 H 0.97000 * 119.99613 * 180.02562 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0417 1.2025 0.0000
4 8 1.3789 2.2232 -0.0005
5 6 3.4552 1.2765 -0.0005
6 16 4.5687 -0.0890 -0.0023
7 6 5.9020 0.9798 -0.0027
8 7 5.5050 2.2101 -0.0072
9 6 4.2091 2.4287 -0.0004
10 7 3.6516 3.7040 0.0008
11 6 4.4511 4.7890 0.0066
12 8 5.6564 4.6541 0.0055
13 6 3.8476 6.1698 0.0142
14 6 4.9482 7.1992 0.0189
15 1 5.9815 6.8849 0.0163
16 6 4.6361 8.5421 0.0257
17 7 3.3778 8.9247 0.0284
18 14 6.0004 9.8181 0.0308
19 1 6.8392 9.6507 -1.1832
20 1 5.4056 11.1787 0.0385
21 1 6.8410 9.6390 1.2418
22 1 -0.3634 0.5139 0.8900
23 1 -0.3633 0.5138 -0.8900
24 1 -0.3634 -1.0276 -0.0005
25 1 6.9364 0.6695 -0.0033
26 1 2.6876 3.8120 0.0017
27 1 3.2310 6.3017 -0.8749
28 1 3.2313 6.2921 0.9050
29 1 3.1583 9.8696 0.0328
RHF calculation, no. of doubly occupied orbitals= 46
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001143189232.mol2 29
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:48:23
Heat of formation + Delta-G solvation = -88.404169 kcal
Electronic energy + Delta-G solvation = -17871.754765 eV
Core-core repulsion = 14693.733791 eV
Total energy + Delta-G solvation = -3178.020974 eV
No. of doubly occupied orbitals = 46
Molecular weight
(most abundant/longest-lived isotopes) = 270.051 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-42.27009 -41.20274 -39.75595 -37.71917 -35.60241 -35.16454 -32.13284 -31.06819
-28.63738 -26.96906 -25.79556 -23.85557 -22.26220 -21.18191 -19.81941 -18.67390
-18.53021 -18.05348 -17.70747 -17.27530 -16.72420 -16.66298 -16.45799 -15.56971
-15.40776 -14.90862 -14.58391 -14.31743 -14.24378 -13.39803 -13.23328 -12.89929
-12.76538 -12.63793 -12.08490 -11.94326 -11.90224 -11.80933 -11.53992 -11.08792
-10.72107 -10.66290 -10.40090 -9.29716 -8.28780 -6.38043 -1.05405 0.16398
0.46653 1.09628 1.39604 1.43032 1.47220 1.51505 1.67248 1.95352
2.12013 2.40876 3.06558 3.19821 3.64529 4.02782 4.21177 4.33523
4.35403 4.46266 4.73779 4.94097 5.11790 5.18811 5.27495 5.68186
5.82524 6.08590 6.54312 6.65602 6.75543 7.14777 7.32481 8.83484
Molecular weight = 270.05amu
Principal moments of inertia in cm(-1)
A = 0.028102 B = 0.004703 C = 0.004041
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 996.130167 B = 5952.064011 C = 6927.734836
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.027 3.973
2 O -0.347 6.347
3 C 0.555 3.445
4 O -0.541 6.541
5 C -0.401 4.401
6 S 0.307 5.693
7 C 0.074 3.926
8 N -0.520 5.520
9 C 0.399 3.601
10 N -0.643 5.643
11 C 0.511 3.489
12 O -0.506 6.506
13 C 0.013 3.987
14 C -0.539 4.539
15 H 0.061 0.939
16 C 0.010 3.990
17 N -0.924 5.924
18 Si 0.971 3.029
19 H -0.271 1.271
20 H -0.274 1.274
21 H -0.271 1.271
22 H 0.059 0.941
23 H 0.059 0.941
24 H 0.141 0.859
25 H 0.254 0.746
26 H 0.433 0.567
27 H 0.046 0.954
28 H 0.046 0.954
29 H 0.269 0.731
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.482 -23.628 -0.050 23.758
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.066 4.066
2 O -0.263 6.263
3 C 0.404 3.596
4 O -0.434 6.434
5 C -0.527 4.527
6 S 0.560 5.440
7 C -0.220 4.220
8 N -0.239 5.239
9 C 0.162 3.838
10 N -0.294 5.294
11 C 0.300 3.700
12 O -0.378 6.378
13 C -0.027 4.027
14 C -0.578 4.578
15 H 0.079 0.921
16 C -0.189 4.189
17 N -0.564 5.564
18 Si 0.795 3.205
19 H -0.196 1.196
20 H -0.198 1.198
21 H -0.196 1.196
22 H 0.078 0.922
23 H 0.078 0.922
24 H 0.159 0.841
25 H 0.269 0.731
26 H 0.276 0.724
27 H 0.064 0.936
28 H 0.064 0.936
29 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges -1.643 -23.882 -0.061 23.938
hybrid contribution -0.685 2.043 0.008 2.155
sum -2.327 -21.839 -0.053 21.963
Atomic orbital electron populations
1.23259 0.74684 1.06100 1.02555 1.86161 1.25292 1.30476 1.84332
1.18013 0.86741 0.82286 0.72601 1.90803 1.66702 1.36527 1.49389
1.23137 0.96909 0.98188 1.34470 1.83375 0.92332 1.04610 1.63727
1.29636 1.08106 0.89466 0.94772 1.66148 1.13117 1.23550 1.21044
1.18294 0.87492 0.86076 0.91894 1.44138 1.12635 1.02156 1.70451
1.22037 0.87208 0.87123 0.73585 1.90609 1.15609 1.86538 1.45027
1.19116 0.97683 0.86554 0.99298 1.21282 0.93301 0.91149 1.52030
0.92105 1.25848 0.98378 1.00471 0.94174 1.70041 1.18514 1.17192
1.50617 0.85416 0.78710 0.77367 0.79032 1.19567 1.19833 1.19573
0.92190 0.92200 0.84117 0.73062 0.72382 0.93612 0.93604 0.92205
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.43 10.45 113.37 1.18 1.61 15
2 O -0.35 -7.62 10.27 -58.77 -0.60 -8.22 15
3 C 0.56 16.04 7.72 68.63 0.53 16.57 15
4 O -0.54 -18.51 14.31 19.17 0.27 -18.23 15
5 C -0.40 -11.54 6.35 22.95 0.15 -11.39 15
6 S 0.31 5.26 22.98 -56.49 -1.30 3.96 15
7 C 0.07 1.55 12.19 130.62 1.59 3.14 15
8 N -0.52 -18.14 8.39 -199.11 -1.67 -19.81 15
9 C 0.40 14.57 7.43 132.94 0.99 15.56 15
10 N -0.64 -26.91 5.35 -310.28 -1.66 -28.57 15
11 C 0.51 25.56 7.79 87.66 0.68 26.25 15
12 O -0.51 -27.78 13.96 -3.04 -0.04 -27.82 15
13 C 0.01 0.71 5.46 29.10 0.16 0.87 15
14 C -0.54 -32.47 8.92 25.60 0.23 -32.24 15
15 H 0.06 3.79 6.75 -2.91 -0.02 3.77 15
16 C 0.01 0.60 5.46 84.65 0.46 1.06 15
17 N -0.92 -55.25 13.29 21.45 0.28 -54.97 15
18 Si 0.97 45.87 29.54 68.60 2.03 47.90 15
19 H -0.27 -12.52 7.11 99.48 0.71 -11.81 15
20 H -0.27 -12.22 7.11 99.48 0.71 -11.51 15
21 H -0.27 -12.52 7.11 99.48 0.71 -11.82 15
22 H 0.06 0.99 8.13 -2.39 -0.02 0.97 15
23 H 0.06 0.98 8.13 -2.39 -0.02 0.96 15
24 H 0.14 1.08 8.14 -2.39 -0.02 1.06 15
25 H 0.25 2.65 8.06 -2.91 -0.02 2.63 15
26 H 0.43 17.15 6.26 -92.71 -0.58 16.57 15
27 H 0.05 2.53 8.14 -2.39 -0.02 2.51 15
28 H 0.05 2.53 8.14 -2.39 -0.02 2.51 15
29 H 0.27 15.04 8.31 -92.71 -0.77 14.27 15
Total: -1.00 -78.13 281.24 3.91 -74.22
By element:
Atomic # 1 Polarization: 9.48 SS G_CDS: 0.63 Total: 10.11 kcal
Atomic # 6 Polarization: 15.45 SS G_CDS: 5.97 Total: 21.42 kcal
Atomic # 7 Polarization: -100.30 SS G_CDS: -3.05 Total: -103.34 kcal
Atomic # 8 Polarization: -53.90 SS G_CDS: -0.37 Total: -54.27 kcal
Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal
Atomic # 16 Polarization: 5.26 SS G_CDS: -1.30 Total: 3.96 kcal
Total: -78.13 3.91 -74.22 kcal
The number of atoms in the molecule is 29
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001143189232.mol2 29
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -14.183 kcal
(2) G-P(sol) polarization free energy of solvation -78.133 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.317 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.912 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.221 kcal
(6) G-S(sol) free energy of system = (1) + (5) -88.404 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds