Wall clock time and date at job start Mon Mar 30 2020 00:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.34960 * 117.00324 * 2 1 4 4 O 1.21703 * 119.99806 * 359.97438 * 3 2 1 5 5 C 1.41536 * 120.00323 * 180.02562 * 3 2 1 6 6 S 1.76202 * 126.19710 * 0.04216 * 5 3 2 7 7 C 1.70877 * 90.48045 * 179.97438 * 6 5 3 8 8 N 1.29279 * 110.83111 * 359.73283 * 7 6 5 9 9 C 1.31421 * 117.45720 * 0.50097 * 8 7 6 10 10 N 1.39187 * 123.18642 * 179.75483 * 9 8 7 11 11 C 1.34777 * 119.99864 * 359.42556 * 10 9 8 12 12 O 1.21283 * 120.00222 * 0.28196 * 11 10 9 13 13 C 1.50703 * 120.00290 * 180.27756 * 11 10 9 14 14 C 1.50701 * 109.47355 * 180.02562 * 13 11 10 15 15 H 1.08000 * 119.99624 * 0.02562 * 14 13 11 16 16 C 1.37872 * 119.99634 * 179.97438 * 14 13 11 17 17 N 1.31515 * 120.00230 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99703 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.46919 * 60.00153 * 18 16 14 20 20 H 1.48496 * 109.47105 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47194 * 300.00217 * 18 16 14 22 22 H 1.09003 * 109.47170 * 300.00065 * 1 2 3 23 23 H 1.09003 * 109.46824 * 60.00228 * 1 2 3 24 24 H 1.08997 * 109.47469 * 179.97438 * 1 2 3 25 25 H 1.07998 * 124.58460 * 179.97438 * 7 6 5 26 26 H 0.97001 * 120.00348 * 179.71031 * 10 9 8 27 27 H 1.08998 * 109.46954 * 300.00581 * 13 11 10 28 28 H 1.09002 * 109.46946 * 59.99717 * 13 11 10 29 29 H 0.97000 * 119.99613 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0417 1.2025 0.0000 4 8 1.3789 2.2232 -0.0005 5 6 3.4552 1.2765 -0.0005 6 16 4.5687 -0.0890 -0.0023 7 6 5.9020 0.9798 -0.0027 8 7 5.5050 2.2101 -0.0072 9 6 4.2091 2.4287 -0.0004 10 7 3.6516 3.7040 0.0008 11 6 4.4511 4.7890 0.0066 12 8 5.6564 4.6541 0.0055 13 6 3.8476 6.1698 0.0142 14 6 4.9482 7.1992 0.0189 15 1 5.9815 6.8849 0.0163 16 6 4.6361 8.5421 0.0257 17 7 3.3778 8.9247 0.0284 18 14 6.0004 9.8181 0.0308 19 1 6.8392 9.6507 -1.1832 20 1 5.4056 11.1787 0.0385 21 1 6.8410 9.6390 1.2418 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 6.9364 0.6695 -0.0033 26 1 2.6876 3.8120 0.0017 27 1 3.2310 6.3017 -0.8749 28 1 3.2313 6.2921 0.9050 29 1 3.1583 9.8696 0.0328 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143189232.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:23 Heat of formation + Delta-G solvation = -88.404169 kcal Electronic energy + Delta-G solvation = -17871.754765 eV Core-core repulsion = 14693.733791 eV Total energy + Delta-G solvation = -3178.020974 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.051 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.27009 -41.20274 -39.75595 -37.71917 -35.60241 -35.16454 -32.13284 -31.06819 -28.63738 -26.96906 -25.79556 -23.85557 -22.26220 -21.18191 -19.81941 -18.67390 -18.53021 -18.05348 -17.70747 -17.27530 -16.72420 -16.66298 -16.45799 -15.56971 -15.40776 -14.90862 -14.58391 -14.31743 -14.24378 -13.39803 -13.23328 -12.89929 -12.76538 -12.63793 -12.08490 -11.94326 -11.90224 -11.80933 -11.53992 -11.08792 -10.72107 -10.66290 -10.40090 -9.29716 -8.28780 -6.38043 -1.05405 0.16398 0.46653 1.09628 1.39604 1.43032 1.47220 1.51505 1.67248 1.95352 2.12013 2.40876 3.06558 3.19821 3.64529 4.02782 4.21177 4.33523 4.35403 4.46266 4.73779 4.94097 5.11790 5.18811 5.27495 5.68186 5.82524 6.08590 6.54312 6.65602 6.75543 7.14777 7.32481 8.83484 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.028102 B = 0.004703 C = 0.004041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.130167 B = 5952.064011 C = 6927.734836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.347 6.347 3 C 0.555 3.445 4 O -0.541 6.541 5 C -0.401 4.401 6 S 0.307 5.693 7 C 0.074 3.926 8 N -0.520 5.520 9 C 0.399 3.601 10 N -0.643 5.643 11 C 0.511 3.489 12 O -0.506 6.506 13 C 0.013 3.987 14 C -0.539 4.539 15 H 0.061 0.939 16 C 0.010 3.990 17 N -0.924 5.924 18 Si 0.971 3.029 19 H -0.271 1.271 20 H -0.274 1.274 21 H -0.271 1.271 22 H 0.059 0.941 23 H 0.059 0.941 24 H 0.141 0.859 25 H 0.254 0.746 26 H 0.433 0.567 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.482 -23.628 -0.050 23.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.263 6.263 3 C 0.404 3.596 4 O -0.434 6.434 5 C -0.527 4.527 6 S 0.560 5.440 7 C -0.220 4.220 8 N -0.239 5.239 9 C 0.162 3.838 10 N -0.294 5.294 11 C 0.300 3.700 12 O -0.378 6.378 13 C -0.027 4.027 14 C -0.578 4.578 15 H 0.079 0.921 16 C -0.189 4.189 17 N -0.564 5.564 18 Si 0.795 3.205 19 H -0.196 1.196 20 H -0.198 1.198 21 H -0.196 1.196 22 H 0.078 0.922 23 H 0.078 0.922 24 H 0.159 0.841 25 H 0.269 0.731 26 H 0.276 0.724 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.643 -23.882 -0.061 23.938 hybrid contribution -0.685 2.043 0.008 2.155 sum -2.327 -21.839 -0.053 21.963 Atomic orbital electron populations 1.23259 0.74684 1.06100 1.02555 1.86161 1.25292 1.30476 1.84332 1.18013 0.86741 0.82286 0.72601 1.90803 1.66702 1.36527 1.49389 1.23137 0.96909 0.98188 1.34470 1.83375 0.92332 1.04610 1.63727 1.29636 1.08106 0.89466 0.94772 1.66148 1.13117 1.23550 1.21044 1.18294 0.87492 0.86076 0.91894 1.44138 1.12635 1.02156 1.70451 1.22037 0.87208 0.87123 0.73585 1.90609 1.15609 1.86538 1.45027 1.19116 0.97683 0.86554 0.99298 1.21282 0.93301 0.91149 1.52030 0.92105 1.25848 0.98378 1.00471 0.94174 1.70041 1.18514 1.17192 1.50617 0.85416 0.78710 0.77367 0.79032 1.19567 1.19833 1.19573 0.92190 0.92200 0.84117 0.73062 0.72382 0.93612 0.93604 0.92205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.45 113.37 1.18 1.61 15 2 O -0.35 -7.62 10.27 -58.77 -0.60 -8.22 15 3 C 0.56 16.04 7.72 68.63 0.53 16.57 15 4 O -0.54 -18.51 14.31 19.17 0.27 -18.23 15 5 C -0.40 -11.54 6.35 22.95 0.15 -11.39 15 6 S 0.31 5.26 22.98 -56.49 -1.30 3.96 15 7 C 0.07 1.55 12.19 130.62 1.59 3.14 15 8 N -0.52 -18.14 8.39 -199.11 -1.67 -19.81 15 9 C 0.40 14.57 7.43 132.94 0.99 15.56 15 10 N -0.64 -26.91 5.35 -310.28 -1.66 -28.57 15 11 C 0.51 25.56 7.79 87.66 0.68 26.25 15 12 O -0.51 -27.78 13.96 -3.04 -0.04 -27.82 15 13 C 0.01 0.71 5.46 29.10 0.16 0.87 15 14 C -0.54 -32.47 8.92 25.60 0.23 -32.24 15 15 H 0.06 3.79 6.75 -2.91 -0.02 3.77 15 16 C 0.01 0.60 5.46 84.65 0.46 1.06 15 17 N -0.92 -55.25 13.29 21.45 0.28 -54.97 15 18 Si 0.97 45.87 29.54 68.60 2.03 47.90 15 19 H -0.27 -12.52 7.11 99.48 0.71 -11.81 15 20 H -0.27 -12.22 7.11 99.48 0.71 -11.51 15 21 H -0.27 -12.52 7.11 99.48 0.71 -11.82 15 22 H 0.06 0.99 8.13 -2.39 -0.02 0.97 15 23 H 0.06 0.98 8.13 -2.39 -0.02 0.96 15 24 H 0.14 1.08 8.14 -2.39 -0.02 1.06 15 25 H 0.25 2.65 8.06 -2.91 -0.02 2.63 15 26 H 0.43 17.15 6.26 -92.71 -0.58 16.57 15 27 H 0.05 2.53 8.14 -2.39 -0.02 2.51 15 28 H 0.05 2.53 8.14 -2.39 -0.02 2.51 15 29 H 0.27 15.04 8.31 -92.71 -0.77 14.27 15 Total: -1.00 -78.13 281.24 3.91 -74.22 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: 0.63 Total: 10.11 kcal Atomic # 6 Polarization: 15.45 SS G_CDS: 5.97 Total: 21.42 kcal Atomic # 7 Polarization: -100.30 SS G_CDS: -3.05 Total: -103.34 kcal Atomic # 8 Polarization: -53.90 SS G_CDS: -0.37 Total: -54.27 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Atomic # 16 Polarization: 5.26 SS G_CDS: -1.30 Total: 3.96 kcal Total: -78.13 3.91 -74.22 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143189232.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.183 kcal (2) G-P(sol) polarization free energy of solvation -78.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds