Wall clock time and date at job start Mon Mar 30 2020 00:53:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31516 * 1
3 3 Si 1.86797 * 120.00104 * 2 1
4 4 H 1.48500 * 109.47378 * 270.00600 * 3 2 1
5 5 H 1.48505 * 109.46817 * 30.00458 * 3 2 1
6 6 H 1.48497 * 109.47062 * 150.00153 * 3 2 1
7 7 C 1.37869 * 119.99765 * 180.02562 * 2 1 3
8 8 H 1.08005 * 119.99931 * 179.97438 * 7 2 1
9 9 C 1.50703 * 120.00277 * 359.97438 * 7 2 1
10 10 C 1.50699 * 109.46962 * 179.97438 * 9 7 2
11 11 O 1.21273 * 120.00508 * 0.02562 * 10 9 7
12 12 N 1.34787 * 119.99740 * 179.97438 * 10 9 7
13 13 C 1.39545 * 119.99942 * 185.60724 * 12 10 9
14 14 C 1.39355 * 120.84981 * 24.54265 * 13 12 10
15 15 C 1.38100 * 119.05956 * 179.97438 * 14 13 12
16 16 Cl 1.73602 * 119.59711 * 180.02562 * 15 14 13
17 17 N 1.32074 * 120.80851 * 0.02562 * 15 14 13
18 18 C 1.31980 * 121.87363 * 359.67032 * 17 15 14
19 19 C 1.37930 * 120.85080 * 0.62085 * 18 17 15
20 20 C 1.50704 * 120.44405 * 179.69000 * 19 18 17
21 21 O 1.42898 * 109.47157 * 359.71717 * 20 19 18
22 22 H 0.97005 * 120.00005 * 359.97438 * 1 2 3
23 23 H 1.09003 * 109.46934 * 60.00408 * 9 7 2
24 24 H 1.08992 * 109.46876 * 300.00028 * 9 7 2
25 25 H 0.96999 * 119.99613 * 5.61297 * 12 10 9
26 26 H 1.07991 * 120.47120 * 0.02562 * 14 13 12
27 27 H 1.07999 * 119.57020 * 180.30820 * 18 17 15
28 28 H 1.09005 * 109.46838 * 239.72018 * 20 19 18
29 29 H 1.08993 * 109.47389 * 119.72477 * 20 19 18
30 30 H 0.96698 * 113.99995 * 180.02562 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4966 2.0465 -1.4000
5 1 1.4466 2.6526 0.7002
6 1 3.5467 1.4401 0.7000
7 6 2.0045 -1.1940 -0.0005
8 1 3.0845 -1.1940 -0.0010
9 6 1.2509 -2.4991 -0.0005
10 6 2.2303 -3.6445 -0.0018
11 8 3.4226 -3.4230 -0.0022
12 7 1.7810 -4.9153 -0.0015
13 6 2.6825 -5.9741 0.1154
14 6 3.9237 -5.7921 0.7223
15 6 4.7871 -6.8656 0.8186
16 17 6.3365 -6.6547 1.5726
17 7 4.4484 -8.0508 0.3443
18 6 3.2799 -8.2631 -0.2314
19 6 2.3644 -7.2410 -0.3717
20 6 1.0356 -7.4920 -1.0369
21 8 0.9573 -8.8597 -1.4435
22 1 -0.4850 0.8401 0.0004
23 1 0.6240 -2.5567 -0.8904
24 1 0.6247 -2.5570 0.8896
25 1 0.8310 -5.0938 -0.0826
26 1 4.2060 -4.8255 1.1124
27 1 3.0395 -9.2486 -0.6019
28 1 0.9390 -6.8471 -1.9104
29 1 0.2309 -7.2751 -0.3344
30 1 0.1268 -9.0931 -1.8804
RHF calculation, no. of doubly occupied orbitals= 46
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001143189480.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:53:03
Heat of formation + Delta-G solvation = -61.154048 kcal
Electronic energy + Delta-G solvation = -17781.834980 eV
Core-core repulsion = 14602.951953 eV
Total energy + Delta-G solvation = -3178.883027 eV
No. of doubly occupied orbitals = 46
Molecular weight
(most abundant/longest-lived isotopes) = 270.056 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-40.84330 -38.87877 -37.20314 -36.42865 -35.01443 -33.15746 -31.63271 -31.09779
-28.91179 -26.46783 -24.56826 -23.00773 -21.93463 -20.22294 -18.46114 -17.55978
-16.73836 -16.24523 -15.74468 -15.67697 -15.23523 -14.93845 -14.64115 -14.48004
-14.05810 -13.88227 -13.13926 -12.52305 -12.29032 -12.03712 -11.77110 -11.49340
-11.20535 -10.92313 -10.90949 -10.72055 -10.50250 -10.12343 -9.79025 -9.47573
-9.01942 -8.74277 -8.59222 -8.39607 -6.21830 -4.23078 0.91150 1.22444
1.88925 3.18734 3.23019 3.26688 3.32738 3.41009 3.72987 3.81356
4.35855 4.56759 4.73323 4.87059 5.07848 5.15039 5.17272 5.19489
5.56626 5.61170 5.98153 6.06613 6.31936 6.76147 6.89810 7.04498
7.27707 7.53389 7.80909 7.81872 8.07014 8.66862 8.87520 9.43248
10.90192
Molecular weight = 270.06amu
Principal moments of inertia in cm(-1)
A = 0.019388 B = 0.005036 C = 0.004054
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1443.868729 B = 5558.322718 C = 6905.437529
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.898 5.898
2 C 0.058 3.942
3 Si 0.904 3.096
4 H -0.279 1.279
5 H -0.286 1.286
6 H -0.271 1.271
7 C -0.516 4.516
8 H 0.077 0.923
9 C 0.008 3.992
10 C 0.514 3.486
11 O -0.508 6.508
12 N -0.680 5.680
13 C 0.228 3.772
14 C -0.173 4.173
15 C 0.192 3.808
16 Cl -0.034 7.034
17 N -0.504 5.504
18 C 0.159 3.841
19 C -0.192 4.192
20 C 0.129 3.871
21 O -0.568 6.568
22 H 0.264 0.736
23 H 0.054 0.946
24 H 0.056 0.944
25 H 0.412 0.588
26 H 0.170 0.830
27 H 0.173 0.827
28 H 0.064 0.936
29 H 0.061 0.939
30 H 0.386 0.614
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.162 -15.348 -0.668 15.363
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.537 5.537
2 C -0.143 4.143
3 Si 0.731 3.269
4 H -0.205 1.205
5 H -0.211 1.211
6 H -0.195 1.195
7 C -0.554 4.554
8 H 0.095 0.905
9 C -0.031 4.031
10 C 0.305 3.695
11 O -0.381 6.381
12 N -0.325 5.325
13 C 0.121 3.879
14 C -0.196 4.196
15 C 0.030 3.970
16 Cl -0.005 7.005
17 N -0.218 5.218
18 C 0.001 3.999
19 C -0.198 4.198
20 C 0.051 3.949
21 O -0.374 6.374
22 H 0.073 0.927
23 H 0.071 0.929
24 H 0.074 0.926
25 H 0.249 0.751
26 H 0.187 0.813
27 H 0.190 0.810
28 H 0.082 0.918
29 H 0.079 0.921
30 H 0.234 0.766
Dipole moment (debyes) X Y Z Total
from point charges 1.851 -15.585 -0.239 15.696
hybrid contribution -1.159 1.520 -0.323 1.939
sum 0.692 -14.065 -0.561 14.093
Atomic orbital electron populations
1.69942 1.06085 1.27268 1.50446 1.24991 0.94940 0.99625 0.94792
0.86385 0.79867 0.82328 0.78304 1.20489 1.21147 1.19540 1.21103
0.94297 0.88788 1.51206 0.90478 1.19319 0.93893 0.89808 1.00070
1.22571 0.91738 0.82640 0.72513 1.90549 1.17808 1.83854 1.45867
1.44241 1.09881 1.05389 1.73005 1.17767 0.90837 0.87208 0.92069
1.22043 0.93572 1.01419 1.02603 1.21430 0.88917 0.90264 0.96439
1.98390 1.26308 1.96577 1.79236 1.67091 1.19397 1.22669 1.12598
1.22246 0.86125 0.99095 0.92406 1.20448 0.99552 0.94049 1.05753
1.20622 0.93218 0.83526 0.97567 1.86381 1.43485 1.26490 1.81025
0.92667 0.92862 0.92636 0.75144 0.81286 0.80996 0.91761 0.92074
0.76584
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -24.89 13.29 55.43 0.74 -24.15 16
2 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16
3 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16
4 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16
5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16
6 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16
7 C -0.52 -13.95 8.92 -34.44 -0.31 -14.26 16
8 H 0.08 2.18 6.75 -52.48 -0.35 1.82 16
9 C 0.01 0.19 5.46 -29.03 -0.16 0.03 16
10 C 0.51 10.45 7.65 -10.98 -0.08 10.37 16
11 O -0.51 -11.90 12.67 5.56 0.07 -11.83 16
12 N -0.68 -10.52 5.19 -9.71 -0.05 -10.57 16
13 C 0.23 3.55 6.45 -83.50 -0.54 3.01 16
14 C -0.17 -2.97 8.56 -39.22 -0.34 -3.30 16
15 C 0.19 3.14 7.27 -17.50 -0.13 3.02 16
16 Cl -0.03 -0.50 29.10 -51.86 -1.51 -2.01 16
17 N -0.50 -7.95 10.34 -10.44 -0.11 -8.06 16
18 C 0.16 2.18 10.53 -17.60 -0.19 1.99 16
19 C -0.19 -2.53 5.91 -104.30 -0.62 -3.14 16
20 C 0.13 1.20 6.49 36.01 0.23 1.44 16
21 O -0.57 -4.71 12.17 -35.23 -0.43 -5.14 16
22 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16
23 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16
24 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16
25 H 0.41 4.91 7.82 -40.82 -0.32 4.59 16
26 H 0.17 3.22 5.89 -52.49 -0.31 2.91 16
27 H 0.17 2.03 7.01 -52.49 -0.37 1.66 16
28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16
29 H 0.06 0.46 7.94 -51.93 -0.41 0.05 16
30 H 0.39 1.33 9.12 45.56 0.42 1.75 16
LS Contribution 283.59 15.07 4.27 4.27
Total: -1.00 -31.71 283.59 -6.00 -37.72
By element:
Atomic # 1 Polarization: 4.74 SS G_CDS: -1.75 Total: 2.99 kcal
Atomic # 6 Polarization: 2.84 SS G_CDS: -2.22 Total: 0.62 kcal
Atomic # 7 Polarization: -43.35 SS G_CDS: 0.58 Total: -42.77 kcal
Atomic # 8 Polarization: -16.61 SS G_CDS: -0.36 Total: -16.97 kcal
Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal
Atomic # 17 Polarization: -0.50 SS G_CDS: -1.51 Total: -2.01 kcal
Total LS contribution 4.27 Total: 4.27 kcal
Total: -31.71 -6.00 -37.72 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001143189480.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -23.436 kcal
(2) G-P(sol) polarization free energy of solvation -31.714 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.150 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.004 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.718 kcal
(6) G-S(sol) free energy of system = (1) + (5) -61.154 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds