Wall clock time and date at job start Mon Mar 30 2020 00:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00104 * 2 1 4 4 H 1.48500 * 109.47378 * 270.00600 * 3 2 1 5 5 H 1.48505 * 109.46817 * 30.00458 * 3 2 1 6 6 H 1.48497 * 109.47062 * 150.00153 * 3 2 1 7 7 C 1.37869 * 119.99765 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99931 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00277 * 359.97438 * 7 2 1 10 10 C 1.50699 * 109.46962 * 179.97438 * 9 7 2 11 11 O 1.21273 * 120.00508 * 0.02562 * 10 9 7 12 12 N 1.34787 * 119.99740 * 179.97438 * 10 9 7 13 13 C 1.39545 * 119.99942 * 185.60724 * 12 10 9 14 14 C 1.39355 * 120.84981 * 24.54265 * 13 12 10 15 15 C 1.38100 * 119.05956 * 179.97438 * 14 13 12 16 16 Cl 1.73602 * 119.59711 * 180.02562 * 15 14 13 17 17 N 1.32074 * 120.80851 * 0.02562 * 15 14 13 18 18 C 1.31980 * 121.87363 * 359.67032 * 17 15 14 19 19 C 1.37930 * 120.85080 * 0.62085 * 18 17 15 20 20 C 1.50704 * 120.44405 * 179.69000 * 19 18 17 21 21 O 1.42898 * 109.47157 * 359.71717 * 20 19 18 22 22 H 0.97005 * 120.00005 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.46934 * 60.00408 * 9 7 2 24 24 H 1.08992 * 109.46876 * 300.00028 * 9 7 2 25 25 H 0.96999 * 119.99613 * 5.61297 * 12 10 9 26 26 H 1.07991 * 120.47120 * 0.02562 * 14 13 12 27 27 H 1.07999 * 119.57020 * 180.30820 * 18 17 15 28 28 H 1.09005 * 109.46838 * 239.72018 * 20 19 18 29 29 H 1.08993 * 109.47389 * 119.72477 * 20 19 18 30 30 H 0.96698 * 113.99995 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2303 -3.6445 -0.0018 11 8 3.4226 -3.4230 -0.0022 12 7 1.7810 -4.9153 -0.0015 13 6 2.6825 -5.9741 0.1154 14 6 3.9237 -5.7921 0.7223 15 6 4.7871 -6.8656 0.8186 16 17 6.3365 -6.6547 1.5726 17 7 4.4484 -8.0508 0.3443 18 6 3.2799 -8.2631 -0.2314 19 6 2.3644 -7.2410 -0.3717 20 6 1.0356 -7.4920 -1.0369 21 8 0.9573 -8.8597 -1.4435 22 1 -0.4850 0.8401 0.0004 23 1 0.6240 -2.5567 -0.8904 24 1 0.6247 -2.5570 0.8896 25 1 0.8310 -5.0938 -0.0826 26 1 4.2060 -4.8255 1.1124 27 1 3.0395 -9.2486 -0.6019 28 1 0.9390 -6.8471 -1.9104 29 1 0.2309 -7.2751 -0.3344 30 1 0.1268 -9.0931 -1.8804 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143189480.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:03 Heat of formation + Delta-G solvation = -61.154048 kcal Electronic energy + Delta-G solvation = -17781.834980 eV Core-core repulsion = 14602.951953 eV Total energy + Delta-G solvation = -3178.883027 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.84330 -38.87877 -37.20314 -36.42865 -35.01443 -33.15746 -31.63271 -31.09779 -28.91179 -26.46783 -24.56826 -23.00773 -21.93463 -20.22294 -18.46114 -17.55978 -16.73836 -16.24523 -15.74468 -15.67697 -15.23523 -14.93845 -14.64115 -14.48004 -14.05810 -13.88227 -13.13926 -12.52305 -12.29032 -12.03712 -11.77110 -11.49340 -11.20535 -10.92313 -10.90949 -10.72055 -10.50250 -10.12343 -9.79025 -9.47573 -9.01942 -8.74277 -8.59222 -8.39607 -6.21830 -4.23078 0.91150 1.22444 1.88925 3.18734 3.23019 3.26688 3.32738 3.41009 3.72987 3.81356 4.35855 4.56759 4.73323 4.87059 5.07848 5.15039 5.17272 5.19489 5.56626 5.61170 5.98153 6.06613 6.31936 6.76147 6.89810 7.04498 7.27707 7.53389 7.80909 7.81872 8.07014 8.66862 8.87520 9.43248 10.90192 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.019388 B = 0.005036 C = 0.004054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.868729 B = 5558.322718 C = 6905.437529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.058 3.942 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.516 4.516 8 H 0.077 0.923 9 C 0.008 3.992 10 C 0.514 3.486 11 O -0.508 6.508 12 N -0.680 5.680 13 C 0.228 3.772 14 C -0.173 4.173 15 C 0.192 3.808 16 Cl -0.034 7.034 17 N -0.504 5.504 18 C 0.159 3.841 19 C -0.192 4.192 20 C 0.129 3.871 21 O -0.568 6.568 22 H 0.264 0.736 23 H 0.054 0.946 24 H 0.056 0.944 25 H 0.412 0.588 26 H 0.170 0.830 27 H 0.173 0.827 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.162 -15.348 -0.668 15.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.143 4.143 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.195 1.195 7 C -0.554 4.554 8 H 0.095 0.905 9 C -0.031 4.031 10 C 0.305 3.695 11 O -0.381 6.381 12 N -0.325 5.325 13 C 0.121 3.879 14 C -0.196 4.196 15 C 0.030 3.970 16 Cl -0.005 7.005 17 N -0.218 5.218 18 C 0.001 3.999 19 C -0.198 4.198 20 C 0.051 3.949 21 O -0.374 6.374 22 H 0.073 0.927 23 H 0.071 0.929 24 H 0.074 0.926 25 H 0.249 0.751 26 H 0.187 0.813 27 H 0.190 0.810 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 1.851 -15.585 -0.239 15.696 hybrid contribution -1.159 1.520 -0.323 1.939 sum 0.692 -14.065 -0.561 14.093 Atomic orbital electron populations 1.69942 1.06085 1.27268 1.50446 1.24991 0.94940 0.99625 0.94792 0.86385 0.79867 0.82328 0.78304 1.20489 1.21147 1.19540 1.21103 0.94297 0.88788 1.51206 0.90478 1.19319 0.93893 0.89808 1.00070 1.22571 0.91738 0.82640 0.72513 1.90549 1.17808 1.83854 1.45867 1.44241 1.09881 1.05389 1.73005 1.17767 0.90837 0.87208 0.92069 1.22043 0.93572 1.01419 1.02603 1.21430 0.88917 0.90264 0.96439 1.98390 1.26308 1.96577 1.79236 1.67091 1.19397 1.22669 1.12598 1.22246 0.86125 0.99095 0.92406 1.20448 0.99552 0.94049 1.05753 1.20622 0.93218 0.83526 0.97567 1.86381 1.43485 1.26490 1.81025 0.92667 0.92862 0.92636 0.75144 0.81286 0.80996 0.91761 0.92074 0.76584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.89 13.29 55.43 0.74 -24.15 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.52 -13.95 8.92 -34.44 -0.31 -14.26 16 8 H 0.08 2.18 6.75 -52.48 -0.35 1.82 16 9 C 0.01 0.19 5.46 -29.03 -0.16 0.03 16 10 C 0.51 10.45 7.65 -10.98 -0.08 10.37 16 11 O -0.51 -11.90 12.67 5.56 0.07 -11.83 16 12 N -0.68 -10.52 5.19 -9.71 -0.05 -10.57 16 13 C 0.23 3.55 6.45 -83.50 -0.54 3.01 16 14 C -0.17 -2.97 8.56 -39.22 -0.34 -3.30 16 15 C 0.19 3.14 7.27 -17.50 -0.13 3.02 16 16 Cl -0.03 -0.50 29.10 -51.86 -1.51 -2.01 16 17 N -0.50 -7.95 10.34 -10.44 -0.11 -8.06 16 18 C 0.16 2.18 10.53 -17.60 -0.19 1.99 16 19 C -0.19 -2.53 5.91 -104.30 -0.62 -3.14 16 20 C 0.13 1.20 6.49 36.01 0.23 1.44 16 21 O -0.57 -4.71 12.17 -35.23 -0.43 -5.14 16 22 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 23 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 24 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 25 H 0.41 4.91 7.82 -40.82 -0.32 4.59 16 26 H 0.17 3.22 5.89 -52.49 -0.31 2.91 16 27 H 0.17 2.03 7.01 -52.49 -0.37 1.66 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.46 7.94 -51.93 -0.41 0.05 16 30 H 0.39 1.33 9.12 45.56 0.42 1.75 16 LS Contribution 283.59 15.07 4.27 4.27 Total: -1.00 -31.71 283.59 -6.00 -37.72 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -1.75 Total: 2.99 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: -2.22 Total: 0.62 kcal Atomic # 7 Polarization: -43.35 SS G_CDS: 0.58 Total: -42.77 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: -0.36 Total: -16.97 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.51 Total: -2.01 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -31.71 -6.00 -37.72 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143189480.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.436 kcal (2) G-P(sol) polarization free energy of solvation -31.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds