Wall clock time and date at job start Mon Mar 30 2020 00:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00104 * 2 1 4 4 H 1.48500 * 109.47378 * 270.00600 * 3 2 1 5 5 H 1.48505 * 109.46817 * 30.00458 * 3 2 1 6 6 H 1.48497 * 109.47062 * 150.00153 * 3 2 1 7 7 C 1.37869 * 119.99765 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99931 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00277 * 359.97438 * 7 2 1 10 10 C 1.50699 * 109.46962 * 179.97438 * 9 7 2 11 11 O 1.21273 * 120.00508 * 0.02562 * 10 9 7 12 12 N 1.34787 * 119.99740 * 179.97438 * 10 9 7 13 13 C 1.39545 * 119.99942 * 185.60724 * 12 10 9 14 14 C 1.39355 * 120.84981 * 24.54265 * 13 12 10 15 15 C 1.38100 * 119.05956 * 179.97438 * 14 13 12 16 16 Cl 1.73602 * 119.59711 * 180.02562 * 15 14 13 17 17 N 1.32074 * 120.80851 * 0.02562 * 15 14 13 18 18 C 1.31980 * 121.87363 * 359.67032 * 17 15 14 19 19 C 1.37930 * 120.85080 * 0.62085 * 18 17 15 20 20 C 1.50704 * 120.44405 * 179.69000 * 19 18 17 21 21 O 1.42898 * 109.47157 * 359.71717 * 20 19 18 22 22 H 0.97005 * 120.00005 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.46934 * 60.00408 * 9 7 2 24 24 H 1.08992 * 109.46876 * 300.00028 * 9 7 2 25 25 H 0.96999 * 119.99613 * 5.61297 * 12 10 9 26 26 H 1.07991 * 120.47120 * 0.02562 * 14 13 12 27 27 H 1.07999 * 119.57020 * 180.30820 * 18 17 15 28 28 H 1.09005 * 109.46838 * 239.72018 * 20 19 18 29 29 H 1.08993 * 109.47389 * 119.72477 * 20 19 18 30 30 H 0.96698 * 113.99995 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2303 -3.6445 -0.0018 11 8 3.4226 -3.4230 -0.0022 12 7 1.7810 -4.9153 -0.0015 13 6 2.6825 -5.9741 0.1154 14 6 3.9237 -5.7921 0.7223 15 6 4.7871 -6.8656 0.8186 16 17 6.3365 -6.6547 1.5726 17 7 4.4484 -8.0508 0.3443 18 6 3.2799 -8.2631 -0.2314 19 6 2.3644 -7.2410 -0.3717 20 6 1.0356 -7.4920 -1.0369 21 8 0.9573 -8.8597 -1.4435 22 1 -0.4850 0.8401 0.0004 23 1 0.6240 -2.5567 -0.8904 24 1 0.6247 -2.5570 0.8896 25 1 0.8310 -5.0938 -0.0826 26 1 4.2060 -4.8255 1.1124 27 1 3.0395 -9.2486 -0.6019 28 1 0.9390 -6.8471 -1.9104 29 1 0.2309 -7.2751 -0.3344 30 1 0.1268 -9.0931 -1.8804 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143189480.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:03 Heat of formation + Delta-G solvation = -85.369211 kcal Electronic energy + Delta-G solvation = -17782.885028 eV Core-core repulsion = 14602.951953 eV Total energy + Delta-G solvation = -3179.933075 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.11707 -40.33064 -38.07561 -37.45081 -36.40446 -35.16485 -32.76260 -32.46071 -30.68646 -27.40921 -26.28302 -24.47332 -23.05134 -21.72711 -19.62993 -18.76967 -18.34076 -17.74868 -17.01601 -16.80879 -16.57301 -16.17864 -16.03474 -15.90891 -15.16599 -15.12070 -14.81327 -14.23938 -13.56511 -13.38880 -13.00844 -12.83821 -12.78268 -12.62790 -12.37886 -12.13862 -12.07604 -11.49304 -11.22740 -11.11739 -10.64050 -10.47903 -9.98103 -9.61756 -8.27994 -6.34656 -0.25786 -0.02039 0.69278 1.40849 1.42067 1.53319 1.63711 1.89815 2.42248 2.52844 3.06027 3.08962 3.41704 3.76484 3.81938 3.95276 4.22462 4.28161 4.49902 4.51433 4.62934 4.89921 5.01945 5.16740 5.19942 5.49316 5.70588 5.95457 6.38178 6.60530 6.77447 6.95919 7.11211 7.35413 8.83598 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.019388 B = 0.005036 C = 0.004054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.868729 B = 5558.322718 C = 6905.437529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.016 3.984 3 Si 0.959 3.041 4 H -0.273 1.273 5 H -0.275 1.275 6 H -0.276 1.276 7 C -0.539 4.539 8 H 0.057 0.943 9 C 0.012 3.988 10 C 0.522 3.478 11 O -0.545 6.545 12 N -0.658 5.658 13 C 0.212 3.788 14 C -0.189 4.189 15 C 0.181 3.819 16 Cl -0.030 7.030 17 N -0.513 5.513 18 C 0.156 3.844 19 C -0.173 4.173 20 C 0.130 3.870 21 O -0.578 6.578 22 H 0.268 0.732 23 H 0.056 0.944 24 H 0.055 0.945 25 H 0.431 0.569 26 H 0.145 0.855 27 H 0.197 0.803 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.274 -16.519 -1.316 16.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.183 4.183 3 Si 0.784 3.216 4 H -0.198 1.198 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.578 4.578 8 H 0.075 0.925 9 C -0.027 4.027 10 C 0.313 3.687 11 O -0.420 6.420 12 N -0.304 5.304 13 C 0.106 3.894 14 C -0.213 4.213 15 C 0.018 3.982 16 Cl -0.001 7.001 17 N -0.226 5.226 18 C -0.001 4.001 19 C -0.179 4.179 20 C 0.052 3.948 21 O -0.388 6.388 22 H 0.077 0.923 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.271 0.729 26 H 0.163 0.837 27 H 0.213 0.787 28 H 0.093 0.907 29 H 0.105 0.895 30 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 0.686 -16.807 -0.898 16.845 hybrid contribution -0.845 1.751 -0.142 1.949 sum -0.159 -15.056 -1.040 15.093 Atomic orbital electron populations 1.69996 1.06928 1.28169 1.50867 1.25665 0.95772 1.02418 0.94441 0.85534 0.78539 0.79026 0.78497 1.19827 1.20053 1.20059 1.21333 0.93768 0.91062 1.51590 0.92507 1.19135 0.93964 0.89621 1.00018 1.21958 0.90525 0.83760 0.72441 1.90549 1.18954 1.84735 1.47765 1.43685 1.10934 1.03854 1.71950 1.17824 0.90424 0.87968 0.93142 1.21921 0.94874 1.00735 1.03763 1.21437 0.89239 0.90344 0.97180 1.98381 1.25935 1.96617 1.79181 1.67139 1.20491 1.22201 1.12756 1.22719 0.85489 1.00216 0.91679 1.20801 1.01063 0.92305 1.03688 1.20663 0.91359 0.84531 0.98252 1.86316 1.45521 1.25524 1.81445 0.92312 0.92599 0.92719 0.72886 0.83690 0.78663 0.90724 0.89497 0.73887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.63 13.29 21.44 0.28 -50.35 16 2 C 0.02 0.89 5.46 84.65 0.46 1.35 16 3 Si 0.96 43.39 29.54 68.60 2.03 45.42 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 6 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 7 C -0.54 -29.59 8.92 25.60 0.23 -29.36 16 8 H 0.06 3.30 6.75 -2.91 -0.02 3.28 16 9 C 0.01 0.55 5.46 29.10 0.16 0.71 16 10 C 0.52 21.32 7.65 87.66 0.67 21.99 16 11 O -0.54 -26.16 12.67 -3.01 -0.04 -26.20 16 12 N -0.66 -19.55 5.19 -303.02 -1.57 -21.12 16 13 C 0.21 6.36 6.45 38.46 0.25 6.61 16 14 C -0.19 -6.55 8.56 22.51 0.19 -6.36 16 15 C 0.18 5.88 7.27 84.62 0.61 6.50 16 16 Cl -0.03 -0.89 29.10 -2.72 -0.08 -0.97 16 17 N -0.51 -15.53 10.34 -186.95 -1.93 -17.46 16 18 C 0.16 3.91 10.53 84.60 0.89 4.80 16 19 C -0.17 -4.11 5.91 -19.65 -0.12 -4.23 16 20 C 0.13 1.93 6.49 71.24 0.46 2.39 16 21 O -0.58 -7.22 12.17 -148.98 -1.81 -9.03 16 22 H 0.27 13.92 8.31 -92.70 -0.77 13.15 16 23 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 24 H 0.05 2.51 8.14 -2.39 -0.02 2.49 16 25 H 0.43 9.25 7.82 -92.71 -0.72 8.53 16 26 H 0.15 5.78 5.89 -2.92 -0.02 5.76 16 27 H 0.20 3.95 7.01 -2.91 -0.02 3.93 16 28 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 29 H 0.09 0.91 7.94 -2.39 -0.02 0.89 16 30 H 0.41 1.07 9.12 -74.06 -0.68 0.39 16 Total: -1.00 -68.27 283.59 0.50 -67.77 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -0.18 Total: 7.54 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: 3.81 Total: 4.40 kcal Atomic # 7 Polarization: -85.71 SS G_CDS: -3.22 Total: -88.93 kcal Atomic # 8 Polarization: -33.38 SS G_CDS: -1.85 Total: -35.23 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -0.08 Total: -0.97 kcal Total: -68.27 0.50 -67.77 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143189480.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.599 kcal (2) G-P(sol) polarization free energy of solvation -68.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds