Wall clock time and date at job start Mon Mar 30 2020 01:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29892 * 118.97313 * 2 1 4 4 C 1.33963 * 122.82321 * 180.29681 * 3 2 1 5 5 Cl 1.73603 * 119.79724 * 179.72106 * 4 3 2 6 6 C 1.36308 * 120.40219 * 359.73885 * 4 3 2 7 7 N 1.40088 * 120.99354 * 179.97438 * 6 4 3 8 8 C 1.46909 * 118.01715 * 359.97438 * 6 4 3 9 9 N 1.31271 * 121.23265 * 180.02562 * 8 6 4 10 10 N 1.36699 * 118.97440 * 179.73855 * 2 1 3 11 11 C 1.34782 * 120.41385 * 359.97438 * 10 2 1 12 12 O 1.20825 * 120.00191 * 84.86425 * 11 10 2 13 13 C 1.50703 * 119.99332 * 264.86115 * 11 10 2 14 14 C 1.50703 * 109.46491 * 180.02562 * 13 11 10 15 15 H 1.08002 * 120.00334 * 359.97438 * 14 13 11 16 16 C 1.37884 * 119.99629 * 180.02562 * 14 13 11 17 17 N 1.31513 * 119.99725 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 119.99577 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47645 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47032 * 120.00305 * 18 16 14 21 21 H 1.48503 * 109.47010 * 239.99645 * 18 16 14 22 22 H 1.08997 * 109.46780 * 275.10608 * 1 2 3 23 23 H 1.09002 * 109.46961 * 35.10786 * 1 2 3 24 24 H 1.08995 * 109.47108 * 155.10725 * 1 2 3 25 25 H 0.96998 * 120.00179 * 179.97438 * 7 6 4 26 26 H 0.97003 * 119.99940 * 359.97438 * 7 6 4 27 27 H 0.97005 * 120.00323 * 359.97150 * 9 8 6 28 28 H 1.08998 * 109.47301 * 60.00277 * 13 11 10 29 29 H 1.08999 * 109.47155 * 299.99687 * 13 11 10 30 30 H 0.96996 * 119.99421 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1362 1.1364 0.0000 4 6 3.4728 1.2263 -0.0058 5 17 4.2324 2.7874 -0.0127 6 6 4.2400 0.0997 -0.0068 7 7 5.6386 0.1793 -0.0134 8 6 3.5565 -1.2007 -0.0007 9 7 4.2333 -2.3255 -0.0007 10 7 2.1692 -1.1959 0.0055 11 6 1.4829 -2.3559 0.0113 12 8 1.0942 -2.8331 -1.0285 13 6 1.2004 -3.0575 1.3147 14 6 0.4251 -4.3218 1.0467 15 1 0.1628 -4.5900 0.0340 16 6 0.0497 -5.1354 2.0947 17 7 0.3687 -4.8084 3.3280 18 14 -0.9118 -6.7021 1.7626 19 1 -1.1432 -6.8409 0.3023 20 1 -0.1394 -7.8708 2.2552 21 1 -2.2180 -6.6398 2.4665 22 1 -0.3633 0.0915 1.0236 23 1 -0.3633 0.8407 -0.5910 24 1 -0.3633 -0.9321 -0.4325 25 1 6.1706 -0.6318 -0.0136 26 1 6.0751 1.0456 -0.0178 27 1 5.2032 -2.3080 -0.0052 28 1 0.6159 -2.4025 1.9608 29 1 2.1416 -3.3060 1.8050 30 1 0.1043 -5.3807 4.0652 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143189507.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:17 Heat of formation + Delta-G solvation = 8.968489 kcal Electronic energy + Delta-G solvation = -18380.702816 eV Core-core repulsion = 15237.153282 eV Total energy + Delta-G solvation = -3143.549534 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.062 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.91659 -40.18278 -37.89212 -37.31503 -36.09688 -35.18795 -33.53690 -31.87538 -31.18764 -28.17838 -26.81024 -24.95475 -23.70213 -21.97297 -20.27807 -19.01222 -18.34336 -18.21910 -17.58672 -17.25902 -17.05619 -16.42812 -15.73620 -15.56165 -15.46685 -14.36872 -14.30342 -14.22835 -13.72449 -13.46897 -13.26891 -12.88168 -12.63797 -12.51970 -12.44403 -12.14023 -12.00685 -11.71887 -11.50576 -11.28443 -10.71362 -10.63414 -10.41902 -8.27742 -8.22558 -6.36473 -0.44843 0.54688 0.59464 0.73266 1.12846 1.43041 1.45028 1.58799 2.17794 2.37201 2.42149 2.86627 3.09619 3.28463 3.56276 3.92601 4.22999 4.39616 4.60429 4.66740 4.89560 4.94104 5.05305 5.19841 5.61486 5.66865 5.94663 5.97901 6.38700 6.53957 6.65189 6.75034 6.92587 7.33031 8.85601 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.033373 B = 0.005021 C = 0.004746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.805149 B = 5574.887172 C = 5898.453414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.376 3.624 3 N -0.504 5.504 4 C 0.066 3.934 5 Cl -0.015 7.015 6 C 0.106 3.894 7 N -0.833 5.833 8 C 0.420 3.580 9 N -0.755 5.755 10 N -0.532 5.532 11 C 0.578 3.422 12 O -0.464 6.464 13 C 0.010 3.990 14 C -0.540 4.540 15 H 0.063 0.937 16 C 0.017 3.983 17 N -0.921 5.921 18 Si 0.965 3.035 19 H -0.270 1.270 20 H -0.278 1.278 21 H -0.270 1.270 22 H 0.118 0.882 23 H 0.131 0.869 24 H 0.072 0.928 25 H 0.408 0.592 26 H 0.420 0.580 27 H 0.364 0.636 28 H 0.060 0.940 29 H 0.044 0.956 30 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.058 13.792 -4.508 16.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.112 3.888 3 N -0.225 5.225 4 C -0.085 4.085 5 Cl 0.013 6.987 6 C -0.011 4.011 7 N -0.379 5.379 8 C 0.144 3.856 9 N -0.389 5.389 10 N -0.257 5.257 11 C 0.372 3.628 12 O -0.329 6.329 13 C -0.030 4.030 14 C -0.578 4.578 15 H 0.081 0.919 16 C -0.183 4.183 17 N -0.561 5.561 18 Si 0.790 3.210 19 H -0.194 1.194 20 H -0.204 1.204 21 H -0.195 1.195 22 H 0.136 0.864 23 H 0.150 0.850 24 H 0.090 0.910 25 H 0.239 0.761 26 H 0.254 0.746 27 H 0.185 0.815 28 H 0.078 0.922 29 H 0.062 0.938 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.314 13.215 -4.945 15.459 hybrid contribution 1.530 -0.649 0.103 1.665 sum 7.844 12.566 -4.842 15.585 Atomic orbital electron populations 1.21117 0.82604 1.05709 1.06960 1.23352 0.96839 0.77355 0.91260 1.66821 1.08822 1.23317 1.23579 1.20204 0.88777 0.86519 1.13042 1.98340 1.78157 1.25193 1.96997 1.19443 0.87673 0.90424 1.03549 1.42086 0.99891 1.12758 1.83150 1.19707 0.83594 0.89165 0.93173 1.69680 1.15805 1.25398 1.28023 1.44196 1.05025 1.09159 1.67314 1.21985 0.71532 0.76634 0.92663 1.90421 1.43768 1.61588 1.37104 1.19351 0.98637 0.95866 0.89122 1.21302 1.35735 1.06565 0.94197 0.91853 1.25758 0.96695 1.01295 0.94540 1.70046 1.46994 1.39617 0.99396 0.85387 0.78478 0.78660 0.78494 1.19440 1.20350 1.19472 0.86422 0.85021 0.90959 0.76053 0.74577 0.81536 0.92246 0.93812 0.92249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.72 9.77 71.24 0.70 -2.02 16 2 C 0.38 12.07 7.58 137.77 1.04 13.12 16 3 N -0.50 -15.29 10.16 -177.36 -1.80 -17.10 16 4 C 0.07 1.87 7.28 83.92 0.61 2.48 16 5 Cl -0.02 -0.34 27.76 -2.72 -0.08 -0.41 16 6 C 0.11 2.94 6.99 39.64 0.28 3.22 16 7 N -0.83 -15.82 9.06 -47.38 -0.43 -16.25 16 8 C 0.42 14.81 7.69 135.55 1.04 15.85 16 9 N -0.75 -27.49 13.44 -50.79 -0.68 -28.18 16 10 N -0.53 -20.11 2.75 -453.12 -1.25 -21.35 16 11 C 0.58 25.87 4.13 87.66 0.36 26.24 16 12 O -0.46 -22.75 15.90 -1.64 -0.03 -22.78 16 13 C 0.01 0.51 5.54 29.10 0.16 0.67 16 14 C -0.54 -30.13 8.92 25.60 0.23 -29.90 16 15 H 0.06 3.64 6.76 -2.91 -0.02 3.62 16 16 C 0.02 0.92 5.46 84.66 0.46 1.38 16 17 N -0.92 -52.38 13.29 21.45 0.28 -52.09 16 18 Si 0.97 43.36 29.54 68.60 2.03 45.38 16 19 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 20 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 21 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 22 H 0.12 2.66 8.14 -2.39 -0.02 2.64 16 23 H 0.13 2.56 8.14 -2.39 -0.02 2.54 16 24 H 0.07 2.14 6.53 -2.39 -0.02 2.12 16 25 H 0.41 6.42 7.37 -92.71 -0.68 5.74 16 26 H 0.42 6.29 7.53 -92.71 -0.70 5.59 16 27 H 0.36 10.43 7.28 -92.70 -0.67 9.75 16 28 H 0.06 2.95 8.14 -2.39 -0.02 2.93 16 29 H 0.04 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.27 14.29 8.31 -92.71 -0.77 13.52 16 Total: -1.00 -66.65 282.93 2.12 -64.53 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: -0.82 Total: 17.21 kcal Atomic # 6 Polarization: 26.15 SS G_CDS: 4.89 Total: 31.04 kcal Atomic # 7 Polarization: -131.10 SS G_CDS: -3.88 Total: -134.97 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: -0.03 Total: -22.78 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.38 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -0.08 Total: -0.41 kcal Total: -66.65 2.12 -64.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143189507.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.503 kcal (2) G-P(sol) polarization free energy of solvation -66.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds