Wall clock time and date at job start Mon Mar 30 2020 01:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 O 1.35148 * 125.23595 * 219.96125 * 3 2 1 5 5 C 1.34804 * 110.99793 * 179.97438 * 4 3 2 6 6 C 1.39018 * 133.05469 * 180.02562 * 5 4 3 7 7 C 1.37831 * 119.86702 * 180.02562 * 6 5 4 8 8 C 1.38779 * 120.71231 * 359.97438 * 7 6 5 9 9 C 1.36689 * 120.40571 * 359.97438 * 8 7 6 10 10 C 1.39541 * 119.73161 * 0.02562 * 9 8 7 11 11 C 1.36745 * 125.23704 * 39.94161 * 3 2 1 12 12 N 1.39253 * 127.04875 * 0.27864 * 11 3 2 13 13 C 1.34782 * 120.00053 * 267.50753 * 12 11 3 14 14 O 1.21280 * 119.99680 * 5.13251 * 13 12 11 15 15 C 1.50700 * 119.99815 * 185.12879 * 13 12 11 16 16 C 1.50697 * 109.46745 * 180.02562 * 15 13 12 17 17 H 1.07999 * 120.00254 * 359.97438 * 16 15 13 18 18 C 1.37878 * 119.99898 * 179.97438 * 16 15 13 19 19 N 1.31516 * 120.00048 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00188 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47078 * 60.00162 * 20 18 16 22 22 H 1.48502 * 109.47198 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47079 * 300.00128 * 20 18 16 24 24 H 1.08001 * 120.06327 * 359.97438 * 6 5 4 25 25 H 1.07997 * 119.63898 * 179.97438 * 7 6 5 26 26 H 1.07999 * 119.79527 * 180.02562 * 8 7 6 27 27 H 1.08000 * 120.13409 * 180.02562 * 9 8 7 28 28 H 0.97002 * 119.99958 * 87.51178 * 12 11 3 29 29 H 1.08999 * 109.46897 * 299.99751 * 15 13 12 30 30 H 1.08995 * 109.46929 * 60.00252 * 15 13 12 31 31 H 0.96994 * 119.99878 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 8 3.3473 0.8471 0.7090 5 6 4.6541 0.5932 0.4965 6 6 5.8236 1.1690 0.9795 7 6 7.0472 0.6830 0.5717 8 6 7.1272 -0.3788 -0.3184 9 6 5.9902 -0.9607 -0.8051 10 6 4.7420 -0.4828 -0.4041 11 6 3.3573 -0.8553 -0.7171 12 7 2.9341 -1.8691 -1.5728 13 6 2.7733 -3.1228 -1.1048 14 8 2.9067 -3.3498 0.0791 15 6 2.4278 -4.2423 -2.0526 16 6 2.3044 -5.5320 -1.2828 17 1 2.4610 -5.5402 -0.2143 18 6 1.9917 -6.7015 -1.9427 19 7 1.8005 -6.6914 -3.2439 20 14 1.8394 -8.3003 -0.9887 21 1 0.7694 -8.1674 0.0324 22 1 1.4988 -9.4035 -1.9226 23 1 3.1295 -8.6010 -0.3176 24 1 5.7734 1.9961 1.6722 25 1 7.9534 1.1334 0.9489 26 1 8.0938 -0.7481 -0.6277 27 1 6.0576 -1.7871 -1.4972 28 1 2.7550 -1.6730 -2.5058 29 1 1.4810 -4.0218 -2.5455 30 1 3.2136 -4.3396 -2.8017 31 1 1.5809 -7.5142 -3.7082 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143189581.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:41 Heat of formation + Delta-G solvation = 27.500660 kcal Electronic energy + Delta-G solvation = -19107.733352 eV Core-core repulsion = 15935.127532 eV Total energy + Delta-G solvation = -3172.605820 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.079 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.68156 -38.97954 -38.13077 -36.63611 -34.89418 -33.02380 -31.68025 -30.57540 -29.84274 -28.71145 -24.61459 -23.82622 -22.86617 -21.47350 -19.97735 -19.41642 -17.99029 -16.80969 -16.65564 -16.32755 -15.89515 -15.17898 -14.97796 -14.50490 -14.35259 -13.95881 -13.75451 -13.53491 -13.34625 -12.98357 -12.72949 -12.41249 -12.17774 -12.17327 -11.38194 -11.18813 -10.87532 -10.68119 -10.20840 -10.03484 -9.38612 -9.11881 -9.01430 -8.84721 -8.49079 -8.33287 -6.12573 -4.13110 0.34659 1.15648 1.62966 1.76612 2.72970 3.18160 3.33709 3.34993 3.36794 3.39795 3.47171 3.54890 3.81498 4.42722 4.51862 4.73940 4.82176 4.97969 5.09537 5.24040 5.26099 5.45318 5.75686 5.96614 6.05632 6.13163 6.26820 6.37582 6.80203 6.90610 7.05322 7.18963 7.21167 7.73305 7.90368 8.22007 8.92966 8.97530 9.52359 10.99505 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.020701 B = 0.004991 C = 0.004330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.244718 B = 5609.033938 C = 6465.172166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.367 5.367 2 C 0.290 3.710 3 C 0.079 3.921 4 O -0.172 6.172 5 C 0.081 3.919 6 C -0.112 4.112 7 C -0.080 4.080 8 C -0.139 4.139 9 C -0.045 4.045 10 C -0.135 4.135 11 C 0.165 3.835 12 N -0.686 5.686 13 C 0.519 3.481 14 O -0.521 6.521 15 C 0.011 3.989 16 C -0.513 4.513 17 H 0.075 0.925 18 C 0.058 3.942 19 N -0.899 5.899 20 Si 0.903 3.097 21 H -0.275 1.275 22 H -0.287 1.287 23 H -0.275 1.275 24 H 0.136 0.864 25 H 0.138 0.862 26 H 0.133 0.867 27 H 0.134 0.866 28 H 0.413 0.587 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.726 16.449 2.566 19.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.045 5.045 2 C -0.026 4.026 3 C 0.027 3.973 4 O -0.071 6.071 5 C 0.033 3.967 6 C -0.131 4.131 7 C -0.098 4.098 8 C -0.157 4.157 9 C -0.063 4.063 10 C -0.138 4.138 11 C 0.066 3.934 12 N -0.343 5.343 13 C 0.311 3.689 14 O -0.394 6.394 15 C -0.029 4.029 16 C -0.552 4.552 17 H 0.093 0.907 18 C -0.144 4.144 19 N -0.538 5.538 20 Si 0.731 3.269 21 H -0.201 1.201 22 H -0.213 1.213 23 H -0.200 1.200 24 H 0.154 0.846 25 H 0.155 0.845 26 H 0.151 0.849 27 H 0.152 0.848 28 H 0.252 0.748 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.933 16.316 3.472 18.923 hybrid contribution 0.229 -0.815 -0.055 0.849 sum 9.162 15.501 3.418 18.327 Atomic orbital electron populations 1.81308 1.10283 1.06442 1.06433 1.23389 0.89443 0.94731 0.95000 1.16407 0.84354 0.96458 1.00059 1.84067 1.15079 1.49988 1.57967 1.19465 0.82494 0.96714 0.98065 1.19958 0.87693 1.02339 1.03096 1.21013 0.96439 0.95949 0.96370 1.20838 0.98569 0.97327 0.98950 1.20426 0.89677 0.98224 0.97950 1.19862 0.93640 0.98737 1.01575 1.18206 0.89183 0.90691 0.95369 1.43443 1.71497 1.07087 1.12244 1.22484 0.73640 0.81891 0.90877 1.90593 1.48357 1.82457 1.17951 1.19268 0.99103 0.90154 0.94336 1.21083 1.47829 0.90878 0.95370 0.90677 1.24986 0.95040 0.99378 0.94960 1.69937 1.48104 1.28205 1.07564 0.86464 0.78856 0.82083 0.79536 1.20075 1.21264 1.20044 0.84576 0.84453 0.84904 0.84840 0.74786 0.93011 0.92782 0.92704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.37 -6.40 18.54 41.84 0.78 -5.63 16 2 C 0.29 4.72 15.79 -22.47 -0.35 4.37 16 3 C 0.08 1.22 7.03 -38.20 -0.27 0.95 16 4 O -0.17 -2.40 10.60 1.94 0.02 -2.38 16 5 C 0.08 1.04 7.39 -38.41 -0.28 0.76 16 6 C -0.11 -1.07 10.07 -39.44 -0.40 -1.47 16 7 C -0.08 -0.65 10.01 -39.53 -0.40 -1.04 16 8 C -0.14 -1.29 9.98 -39.94 -0.40 -1.69 16 9 C -0.04 -0.54 10.05 -39.66 -0.40 -0.94 16 10 C -0.14 -1.90 6.38 -105.08 -0.67 -2.57 16 11 C 0.17 2.62 6.05 -81.58 -0.49 2.12 16 12 N -0.69 -11.42 5.32 -8.48 -0.05 -11.47 16 13 C 0.52 11.34 7.78 -10.98 -0.09 11.26 16 14 O -0.52 -13.28 15.44 5.56 0.09 -13.20 16 15 C 0.01 0.26 5.46 -29.04 -0.16 0.10 16 16 C -0.51 -14.51 8.92 -34.44 -0.31 -14.81 16 17 H 0.08 2.22 6.75 -52.49 -0.35 1.87 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.90 -25.71 13.29 55.43 0.74 -24.97 16 20 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 23 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 24 H 0.14 0.95 8.06 -52.49 -0.42 0.52 16 25 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 26 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 27 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 28 H 0.41 5.50 8.83 -40.82 -0.36 5.14 16 29 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.05 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.26 7.16 8.31 -40.82 -0.34 6.83 16 LS Contribution 296.82 15.07 4.47 4.47 Total: -1.00 -32.98 296.82 -5.67 -38.65 By element: Atomic # 1 Polarization: 1.53 SS G_CDS: -2.39 Total: -0.85 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: -4.31 Total: -1.45 kcal Atomic # 7 Polarization: -43.53 SS G_CDS: 1.47 Total: -42.07 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: 0.11 Total: -15.58 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -32.98 -5.67 -38.65 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143189581.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.148 kcal (2) G-P(sol) polarization free energy of solvation -32.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds