Wall clock time and date at job start Mon Mar 30 2020 01:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 O 1.35148 * 125.23595 * 219.96125 * 3 2 1 5 5 C 1.34804 * 110.99793 * 179.97438 * 4 3 2 6 6 C 1.39018 * 133.05469 * 180.02562 * 5 4 3 7 7 C 1.37831 * 119.86702 * 180.02562 * 6 5 4 8 8 C 1.38779 * 120.71231 * 359.97438 * 7 6 5 9 9 C 1.36689 * 120.40571 * 359.97438 * 8 7 6 10 10 C 1.39541 * 119.73161 * 0.02562 * 9 8 7 11 11 C 1.36745 * 125.23704 * 39.94161 * 3 2 1 12 12 N 1.39253 * 127.04875 * 0.27864 * 11 3 2 13 13 C 1.34782 * 120.00053 * 267.50753 * 12 11 3 14 14 O 1.21280 * 119.99680 * 5.13251 * 13 12 11 15 15 C 1.50700 * 119.99815 * 185.12879 * 13 12 11 16 16 C 1.50697 * 109.46745 * 180.02562 * 15 13 12 17 17 H 1.07999 * 120.00254 * 359.97438 * 16 15 13 18 18 C 1.37878 * 119.99898 * 179.97438 * 16 15 13 19 19 N 1.31516 * 120.00048 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00188 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47078 * 60.00162 * 20 18 16 22 22 H 1.48502 * 109.47198 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47079 * 300.00128 * 20 18 16 24 24 H 1.08001 * 120.06327 * 359.97438 * 6 5 4 25 25 H 1.07997 * 119.63898 * 179.97438 * 7 6 5 26 26 H 1.07999 * 119.79527 * 180.02562 * 8 7 6 27 27 H 1.08000 * 120.13409 * 180.02562 * 9 8 7 28 28 H 0.97002 * 119.99958 * 87.51178 * 12 11 3 29 29 H 1.08999 * 109.46897 * 299.99751 * 15 13 12 30 30 H 1.08995 * 109.46929 * 60.00252 * 15 13 12 31 31 H 0.96994 * 119.99878 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 8 3.3473 0.8471 0.7090 5 6 4.6541 0.5932 0.4965 6 6 5.8236 1.1690 0.9795 7 6 7.0472 0.6830 0.5717 8 6 7.1272 -0.3788 -0.3184 9 6 5.9902 -0.9607 -0.8051 10 6 4.7420 -0.4828 -0.4041 11 6 3.3573 -0.8553 -0.7171 12 7 2.9341 -1.8691 -1.5728 13 6 2.7733 -3.1228 -1.1048 14 8 2.9067 -3.3498 0.0791 15 6 2.4278 -4.2423 -2.0526 16 6 2.3044 -5.5320 -1.2828 17 1 2.4610 -5.5402 -0.2143 18 6 1.9917 -6.7015 -1.9427 19 7 1.8005 -6.6914 -3.2439 20 14 1.8394 -8.3003 -0.9887 21 1 0.7694 -8.1674 0.0324 22 1 1.4988 -9.4035 -1.9226 23 1 3.1295 -8.6010 -0.3176 24 1 5.7734 1.9961 1.6722 25 1 7.9534 1.1334 0.9489 26 1 8.0938 -0.7481 -0.6277 27 1 6.0576 -1.7871 -1.4972 28 1 2.7550 -1.6730 -2.5058 29 1 1.4810 -4.0218 -2.5455 30 1 3.2136 -4.3396 -2.8017 31 1 1.5809 -7.5142 -3.7082 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143189581.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:40 Heat of formation + Delta-G solvation = 6.366860 kcal Electronic energy + Delta-G solvation = -19108.649782 eV Core-core repulsion = 15935.127532 eV Total energy + Delta-G solvation = -3173.522251 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.079 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.72931 -40.66477 -38.99503 -37.95486 -36.37641 -35.13969 -32.87030 -31.50691 -31.13032 -30.38932 -26.21121 -25.21828 -23.78080 -22.84133 -21.44130 -20.51787 -19.14730 -18.50023 -17.97601 -17.70765 -17.33970 -16.62723 -16.32726 -15.97498 -15.79348 -14.97115 -14.81788 -14.81042 -14.76023 -14.60492 -14.21947 -13.96991 -13.30506 -13.27649 -12.93656 -12.85180 -12.60669 -12.08560 -12.05486 -11.51142 -11.30380 -10.77777 -10.66355 -10.56205 -9.72820 -9.33476 -8.27280 -6.34700 -0.72582 0.30193 0.59992 0.63946 1.40272 1.42399 1.46466 1.51271 1.61893 1.89653 2.07969 2.42621 2.68329 2.74463 3.08653 3.57190 3.74891 3.76876 4.18367 4.30199 4.31908 4.48352 4.58640 4.96014 5.01782 5.12730 5.20574 5.34245 5.44300 5.50122 5.53189 5.70954 5.91235 5.96023 5.97259 6.43581 6.77165 7.22307 7.36394 8.84344 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.020701 B = 0.004991 C = 0.004330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.244718 B = 5609.033938 C = 6465.172166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C 0.300 3.700 3 C 0.073 3.927 4 O -0.171 6.171 5 C 0.066 3.934 6 C -0.111 4.111 7 C -0.062 4.062 8 C -0.127 4.127 9 C -0.070 4.070 10 C -0.159 4.159 11 C 0.146 3.854 12 N -0.665 5.665 13 C 0.530 3.470 14 O -0.562 6.562 15 C 0.014 3.986 16 C -0.540 4.540 17 H 0.055 0.945 18 C 0.015 3.985 19 N -0.921 5.921 20 Si 0.961 3.039 21 H -0.276 1.276 22 H -0.273 1.273 23 H -0.270 1.270 24 H 0.167 0.833 25 H 0.183 0.817 26 H 0.163 0.837 27 H 0.127 0.873 28 H 0.429 0.571 29 H 0.047 0.953 30 H 0.056 0.944 31 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.099 17.442 3.218 22.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.072 5.072 2 C -0.015 4.015 3 C 0.020 3.980 4 O -0.070 6.070 5 C 0.018 3.982 6 C -0.129 4.129 7 C -0.080 4.080 8 C -0.145 4.145 9 C -0.088 4.088 10 C -0.162 4.162 11 C 0.047 3.953 12 N -0.321 5.321 13 C 0.321 3.679 14 O -0.438 6.438 15 C -0.026 4.026 16 C -0.578 4.578 17 H 0.073 0.927 18 C -0.184 4.184 19 N -0.560 5.560 20 Si 0.786 3.214 21 H -0.202 1.202 22 H -0.198 1.198 23 H -0.195 1.195 24 H 0.184 0.816 25 H 0.200 0.800 26 H 0.181 0.819 27 H 0.145 0.855 28 H 0.270 0.730 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 11.313 17.356 4.083 21.116 hybrid contribution -0.336 -1.022 -0.269 1.109 sum 10.976 16.334 3.814 20.046 Atomic orbital electron populations 1.81298 1.10984 1.07447 1.07431 1.23548 0.89715 0.93954 0.94263 1.16242 0.83907 0.97170 1.00641 1.84054 1.15756 1.49598 1.57614 1.20006 0.82613 0.97055 0.98494 1.20501 0.86723 1.02713 1.02929 1.21594 0.97448 0.94508 0.94413 1.21279 0.98731 0.96710 0.97771 1.20594 0.90062 0.99049 0.99101 1.19956 0.93198 1.00009 1.03011 1.18430 0.90708 0.90445 0.95729 1.42888 1.70088 1.05955 1.13192 1.21867 0.73373 0.83024 0.89653 1.90567 1.50563 1.83484 1.19236 1.19091 0.98877 0.90182 0.94409 1.21293 1.48649 0.93016 0.94857 0.92686 1.25717 0.94478 1.02327 0.95898 1.70004 1.48255 1.29219 1.08552 0.85556 0.78826 0.78575 0.78431 1.20174 1.19809 1.19518 0.81557 0.79955 0.81896 0.85507 0.72989 0.93555 0.92569 0.92281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -14.10 18.54 19.00 0.35 -13.74 16 2 C 0.30 10.04 15.79 88.33 1.39 11.43 16 3 C 0.07 2.27 7.03 23.17 0.16 2.43 16 4 O -0.17 -4.70 10.60 -15.98 -0.17 -4.87 16 5 C 0.07 1.61 7.39 23.03 0.17 1.78 16 6 C -0.11 -1.71 10.07 22.36 0.23 -1.48 16 7 C -0.06 -0.71 10.01 22.30 0.22 -0.48 16 8 C -0.13 -1.91 9.98 22.04 0.22 -1.69 16 9 C -0.07 -1.60 10.05 22.22 0.22 -1.38 16 10 C -0.16 -4.41 6.38 -20.16 -0.13 -4.53 16 11 C 0.15 4.71 6.05 39.84 0.24 4.95 16 12 N -0.67 -22.72 5.32 -299.12 -1.59 -24.31 16 13 C 0.53 23.85 7.78 87.66 0.68 24.53 16 14 O -0.56 -29.64 15.44 -3.03 -0.05 -29.69 16 15 C 0.01 0.69 5.46 29.10 0.16 0.85 16 16 C -0.54 -31.26 8.92 25.60 0.23 -31.03 16 17 H 0.05 3.36 6.75 -2.91 -0.02 3.34 16 18 C 0.02 0.85 5.46 84.65 0.46 1.31 16 19 N -0.92 -52.85 13.29 21.45 0.28 -52.57 16 20 Si 0.96 44.89 29.54 68.60 2.03 46.92 16 21 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 22 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 23 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 24 H 0.17 1.55 8.06 -2.91 -0.02 1.52 16 25 H 0.18 0.53 8.06 -2.91 -0.02 0.51 16 26 H 0.16 1.45 8.06 -2.91 -0.02 1.43 16 27 H 0.13 2.97 8.06 -2.91 -0.02 2.95 16 28 H 0.43 11.68 8.83 -92.71 -0.82 10.86 16 29 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 30 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 31 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 Total: -1.00 -72.82 296.82 5.50 -67.32 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: 0.38 Total: 4.26 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: 4.26 Total: 6.68 kcal Atomic # 7 Polarization: -89.67 SS G_CDS: -0.95 Total: -90.62 kcal Atomic # 8 Polarization: -34.34 SS G_CDS: -0.22 Total: -34.55 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -72.82 5.50 -67.32 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143189581.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.690 kcal (2) G-P(sol) polarization free energy of solvation -72.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds