Wall clock time and date at job start Mon Mar 30 2020 01:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.31212 * 119.99850 * 2 1 4 4 C 1.47169 * 120.82624 * 5.55180 * 3 2 1 5 5 N 1.39057 * 120.77552 * 0.02562 * 4 3 2 6 6 C 1.36343 * 118.44916 * 179.74667 * 4 3 2 7 7 C 1.40533 * 119.99720 * 0.25199 * 6 4 3 8 8 Cl 1.73598 * 119.09716 * 179.97438 * 7 6 4 9 9 N 1.30137 * 121.80158 * 359.97438 * 7 6 4 10 10 N 1.38000 * 120.82418 * 185.81215 * 3 2 1 11 11 C 1.34779 * 120.13495 * 359.96586 * 10 3 2 12 12 O 1.21240 * 120.00137 * 0.29803 * 11 10 3 13 13 C 1.50691 * 120.00064 * 180.29235 * 11 10 3 14 14 C 1.50708 * 109.47340 * 180.02562 * 13 11 10 15 15 H 1.07992 * 119.99557 * 359.97438 * 14 13 11 16 16 C 1.37879 * 120.00124 * 180.02562 * 14 13 11 17 17 N 1.31513 * 119.99732 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99912 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47083 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47025 * 120.00043 * 18 16 14 21 21 H 1.48500 * 109.47020 * 239.99960 * 18 16 14 22 22 H 1.09004 * 109.46689 * 305.23968 * 1 2 3 23 23 H 1.09000 * 109.47032 * 65.23509 * 1 2 3 24 24 H 1.08994 * 109.47156 * 185.24221 * 1 2 3 25 25 H 0.97003 * 120.00421 * 312.82397 * 5 4 3 26 26 H 0.97006 * 120.00245 * 132.54428 * 5 4 3 27 27 H 1.08003 * 120.00087 * 180.27397 * 6 4 3 28 28 H 1.09004 * 109.47306 * 299.99960 * 13 11 10 29 29 H 1.08997 * 109.47260 * 60.00273 * 13 11 10 30 30 H 0.97008 * 119.99680 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1211 1.1363 0.0000 4 6 1.4088 2.4184 0.1223 5 7 0.0238 2.4543 0.2411 6 6 2.1390 3.5697 0.1221 7 6 3.5381 3.5143 0.0015 8 17 4.4448 4.9947 0.0033 9 7 4.1725 2.3837 -0.1113 10 7 3.4956 1.1593 -0.1200 11 6 4.1838 0.0065 -0.2386 12 8 3.5948 -1.0532 -0.2455 13 6 5.6853 0.0347 -0.3629 14 6 6.2062 -1.3745 -0.4817 15 1 5.5187 -2.2071 -0.4682 16 6 7.5606 -1.6006 -0.6067 17 7 8.3978 -0.5865 -0.6227 18 14 8.2062 -3.3474 -0.7532 19 1 7.0687 -4.3009 -0.7084 20 1 8.9310 -3.5008 -2.0403 21 1 9.1322 -3.6289 0.3730 22 1 -0.3633 0.5930 0.8394 23 1 -0.3633 0.4305 -0.9332 24 1 -0.3633 -1.0233 0.0939 25 1 -0.5283 1.9264 -0.3568 26 1 -0.3903 3.0042 0.9246 27 1 1.6424 4.5243 0.2149 28 1 5.9659 0.6015 -1.2507 29 1 6.1142 0.5076 0.5206 30 1 9.3507 -0.7456 -0.7110 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143193928.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:26 Heat of formation + Delta-G solvation = 85.727436 kcal Electronic energy + Delta-G solvation = -18228.839156 eV Core-core repulsion = 15088.618140 eV Total energy + Delta-G solvation = -3140.221016 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.062 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.68070 -38.18862 -37.19167 -36.20838 -34.46711 -32.92107 -31.93421 -30.42598 -28.95247 -26.50181 -24.63454 -23.65076 -21.98467 -20.41138 -18.33541 -17.42106 -16.80328 -16.34364 -16.01547 -15.56784 -15.37735 -14.80649 -14.49128 -13.89495 -13.56631 -13.40868 -13.14359 -12.90132 -12.09652 -11.99108 -11.48908 -11.28775 -11.00751 -10.73707 -10.63471 -10.50479 -10.37486 -9.97882 -9.64374 -9.20147 -9.14575 -8.47555 -8.39533 -7.52923 -6.01134 -4.02451 0.45743 1.29218 1.74399 2.71692 2.77232 3.24716 3.36985 3.43805 3.52737 3.74656 4.17946 4.49876 4.59135 4.89799 5.05450 5.25290 5.36454 5.39145 5.50197 5.73798 5.80017 6.20625 6.87848 7.09792 7.22556 7.27583 7.40913 7.48561 7.96120 8.06614 8.32412 8.84375 9.06988 9.61823 11.10575 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.019011 B = 0.006101 C = 0.004636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.499597 B = 4588.606571 C = 6037.650702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 N -0.506 5.506 3 C 0.327 3.673 4 C 0.198 3.802 5 N -0.876 5.876 6 C -0.203 4.203 7 C 0.187 3.813 8 Cl 0.002 6.998 9 N -0.210 5.210 10 N -0.361 5.361 11 C 0.528 3.472 12 O -0.446 6.446 13 C 0.025 3.975 14 C -0.517 4.517 15 H 0.075 0.925 16 C 0.059 3.941 17 N -0.894 5.894 18 Si 0.901 3.099 19 H -0.270 1.270 20 H -0.283 1.283 21 H -0.284 1.284 22 H 0.068 0.932 23 H 0.052 0.948 24 H 0.079 0.921 25 H 0.408 0.592 26 H 0.403 0.597 27 H 0.150 0.850 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.776 13.032 1.895 20.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 N -0.229 5.229 3 C 0.051 3.949 4 C 0.083 3.917 5 N -0.431 5.431 6 C -0.236 4.236 7 C -0.023 4.023 8 Cl 0.029 6.971 9 N -0.025 5.025 10 N -0.180 5.180 11 C 0.320 3.680 12 O -0.306 6.306 13 C -0.014 4.014 14 C -0.556 4.556 15 H 0.093 0.907 16 C -0.143 4.143 17 N -0.533 5.533 18 Si 0.728 3.272 19 H -0.195 1.195 20 H -0.210 1.210 21 H -0.210 1.210 22 H 0.086 0.914 23 H 0.070 0.930 24 H 0.098 0.902 25 H 0.245 0.755 26 H 0.235 0.765 27 H 0.167 0.833 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.757 10.911 1.732 18.434 hybrid contribution -1.145 0.551 0.165 1.281 sum -15.902 11.462 1.897 19.694 Atomic orbital electron populations 1.22797 0.88440 1.03065 0.99855 1.73160 1.08097 1.22195 1.19463 1.21552 0.86739 0.89718 0.96886 1.19338 0.85869 0.91346 0.95151 1.42775 1.01802 1.57059 1.41455 1.21152 0.91897 0.99098 1.11441 1.22133 0.90006 0.89088 1.01044 1.98424 1.75347 1.26751 1.96578 1.74952 1.23557 0.90313 1.13651 1.47699 1.01295 1.04557 1.64464 1.22845 0.92537 0.79220 0.73369 1.90692 1.70425 1.26704 1.42829 1.19237 0.81378 1.00120 1.00663 1.21234 0.92366 0.91546 1.50440 0.90698 1.24975 0.96708 0.97510 0.95095 1.69991 1.02860 1.30214 1.50265 0.86384 0.78810 0.84452 0.77540 1.19484 1.20951 1.20962 0.91418 0.92959 0.90239 0.75470 0.76506 0.83254 0.92285 0.92290 0.92871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.29 59.85 0.56 0.68 16 2 N -0.51 -9.52 8.65 -65.26 -0.56 -10.08 16 3 C 0.33 5.88 7.57 -153.70 -1.16 4.71 16 4 C 0.20 2.49 6.83 -81.64 -0.56 1.93 16 5 N -0.88 -6.96 6.69 33.55 0.22 -6.73 16 6 C -0.20 -2.34 9.72 -39.40 -0.38 -2.73 16 7 C 0.19 2.68 7.36 -17.40 -0.13 2.56 16 8 Cl 0.00 0.02 29.08 -51.86 -1.51 -1.49 16 9 N -0.21 -3.91 10.64 32.94 0.35 -3.56 16 10 N -0.36 -7.48 3.65 -9.85 -0.04 -7.52 16 11 C 0.53 13.09 7.71 -10.99 -0.08 13.01 16 12 O -0.45 -12.06 13.78 5.59 0.08 -11.98 16 13 C 0.03 0.68 4.69 -29.04 -0.14 0.54 16 14 C -0.52 -15.28 8.92 -34.44 -0.31 -15.59 16 15 H 0.07 2.28 6.75 -52.49 -0.35 1.93 16 16 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 17 N -0.89 -26.61 13.29 55.43 0.74 -25.87 16 18 Si 0.90 22.35 29.54 -169.99 -5.02 17.33 16 19 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 21 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 22 H 0.07 0.69 6.17 -51.93 -0.32 0.37 16 23 H 0.05 0.53 6.69 -51.93 -0.35 0.19 16 24 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 25 H 0.41 2.87 5.47 -40.82 -0.22 2.65 16 26 H 0.40 2.07 8.96 -40.82 -0.37 1.71 16 27 H 0.15 1.19 8.06 -52.48 -0.42 0.76 16 28 H 0.06 1.62 8.14 -51.93 -0.42 1.20 16 29 H 0.06 1.62 8.14 -51.93 -0.42 1.20 16 30 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 279.05 15.07 4.21 4.21 Total: -1.00 -34.46 279.05 -6.27 -40.74 By element: Atomic # 1 Polarization: 0.69 SS G_CDS: -2.44 Total: -1.75 kcal Atomic # 6 Polarization: 9.01 SS G_CDS: -2.30 Total: 6.71 kcal Atomic # 7 Polarization: -54.47 SS G_CDS: 0.71 Total: -53.76 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.08 Total: -11.98 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Atomic # 17 Polarization: 0.02 SS G_CDS: -1.51 Total: -1.49 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -34.46 -6.27 -40.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143193928.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.466 kcal (2) G-P(sol) polarization free energy of solvation -34.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds