Wall clock time and date at job start Mon Mar 30 2020 01:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.31212 * 119.99850 * 2 1 4 4 C 1.47169 * 120.82624 * 5.55180 * 3 2 1 5 5 N 1.39057 * 120.77552 * 0.02562 * 4 3 2 6 6 C 1.36343 * 118.44916 * 179.74667 * 4 3 2 7 7 C 1.40533 * 119.99720 * 0.25199 * 6 4 3 8 8 Cl 1.73598 * 119.09716 * 179.97438 * 7 6 4 9 9 N 1.30137 * 121.80158 * 359.97438 * 7 6 4 10 10 N 1.38000 * 120.82418 * 185.81215 * 3 2 1 11 11 C 1.34779 * 120.13495 * 359.96586 * 10 3 2 12 12 O 1.21240 * 120.00137 * 0.29803 * 11 10 3 13 13 C 1.50691 * 120.00064 * 180.29235 * 11 10 3 14 14 C 1.50708 * 109.47340 * 180.02562 * 13 11 10 15 15 H 1.07992 * 119.99557 * 359.97438 * 14 13 11 16 16 C 1.37879 * 120.00124 * 180.02562 * 14 13 11 17 17 N 1.31513 * 119.99732 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99912 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47083 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47025 * 120.00043 * 18 16 14 21 21 H 1.48500 * 109.47020 * 239.99960 * 18 16 14 22 22 H 1.09004 * 109.46689 * 305.23968 * 1 2 3 23 23 H 1.09000 * 109.47032 * 65.23509 * 1 2 3 24 24 H 1.08994 * 109.47156 * 185.24221 * 1 2 3 25 25 H 0.97003 * 120.00421 * 312.82397 * 5 4 3 26 26 H 0.97006 * 120.00245 * 132.54428 * 5 4 3 27 27 H 1.08003 * 120.00087 * 180.27397 * 6 4 3 28 28 H 1.09004 * 109.47306 * 299.99960 * 13 11 10 29 29 H 1.08997 * 109.47260 * 60.00273 * 13 11 10 30 30 H 0.97008 * 119.99680 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1211 1.1363 0.0000 4 6 1.4088 2.4184 0.1223 5 7 0.0238 2.4543 0.2411 6 6 2.1390 3.5697 0.1221 7 6 3.5381 3.5143 0.0015 8 17 4.4448 4.9947 0.0033 9 7 4.1725 2.3837 -0.1113 10 7 3.4956 1.1593 -0.1200 11 6 4.1838 0.0065 -0.2386 12 8 3.5948 -1.0532 -0.2455 13 6 5.6853 0.0347 -0.3629 14 6 6.2062 -1.3745 -0.4817 15 1 5.5187 -2.2071 -0.4682 16 6 7.5606 -1.6006 -0.6067 17 7 8.3978 -0.5865 -0.6227 18 14 8.2062 -3.3474 -0.7532 19 1 7.0687 -4.3009 -0.7084 20 1 8.9310 -3.5008 -2.0403 21 1 9.1322 -3.6289 0.3730 22 1 -0.3633 0.5930 0.8394 23 1 -0.3633 0.4305 -0.9332 24 1 -0.3633 -1.0233 0.0939 25 1 -0.5283 1.9264 -0.3568 26 1 -0.3903 3.0042 0.9246 27 1 1.6424 4.5243 0.2149 28 1 5.9659 0.6015 -1.2507 29 1 6.1142 0.5076 0.5206 30 1 9.3507 -0.7456 -0.7110 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143193928.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:25 Heat of formation + Delta-G solvation = 59.308195 kcal Electronic energy + Delta-G solvation = -18229.984781 eV Core-core repulsion = 15088.618140 eV Total energy + Delta-G solvation = -3141.366641 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.062 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.06444 -39.75313 -38.29284 -37.42344 -35.71869 -35.11555 -33.22066 -31.64007 -30.85554 -27.82153 -26.08892 -25.32564 -23.32158 -21.88680 -19.51381 -18.82426 -18.39517 -17.88367 -17.34179 -16.97212 -16.82675 -16.55436 -15.82246 -15.18574 -15.08581 -14.83538 -14.45227 -14.27986 -13.89046 -13.50306 -12.95808 -12.82433 -12.57785 -12.56521 -12.22531 -12.06959 -11.70814 -11.60544 -11.37095 -11.17531 -10.62999 -10.42908 -9.79320 -8.68957 -8.24183 -6.34366 -0.67947 0.08054 0.55707 1.29468 1.39119 1.41282 1.43361 1.57505 2.21777 2.32014 2.42647 3.09885 3.18419 3.43538 3.66661 3.92955 4.29875 4.38825 4.44573 4.62033 4.79457 4.92528 5.13230 5.22831 5.48929 5.70338 6.01146 6.09532 6.22740 6.70296 6.72833 6.80188 7.12233 7.35169 8.88215 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.019011 B = 0.006101 C = 0.004636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.499597 B = 4588.606571 C = 6037.650702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.006 3.994 2 N -0.553 5.553 3 C 0.306 3.694 4 C 0.216 3.784 5 N -0.850 5.850 6 C -0.202 4.202 7 C 0.208 3.792 8 Cl 0.026 6.974 9 N -0.273 5.273 10 N -0.372 5.372 11 C 0.534 3.466 12 O -0.485 6.485 13 C 0.036 3.964 14 C -0.545 4.545 15 H 0.057 0.943 16 C 0.013 3.987 17 N -0.920 5.920 18 Si 0.969 3.031 19 H -0.274 1.274 20 H -0.270 1.270 21 H -0.270 1.270 22 H 0.096 0.904 23 H 0.081 0.919 24 H 0.076 0.924 25 H 0.416 0.584 26 H 0.423 0.577 27 H 0.196 0.804 28 H 0.043 0.957 29 H 0.042 0.958 30 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.708 14.537 2.109 23.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 N -0.276 5.276 3 C 0.030 3.970 4 C 0.099 3.901 5 N -0.407 5.407 6 C -0.235 4.235 7 C 0.000 4.000 8 Cl 0.054 6.946 9 N -0.088 5.088 10 N -0.189 5.189 11 C 0.325 3.675 12 O -0.350 6.350 13 C -0.003 4.003 14 C -0.583 4.583 15 H 0.076 0.924 16 C -0.186 4.186 17 N -0.560 5.560 18 Si 0.793 3.207 19 H -0.199 1.199 20 H -0.195 1.195 21 H -0.195 1.195 22 H 0.114 0.886 23 H 0.099 0.901 24 H 0.095 0.905 25 H 0.255 0.745 26 H 0.258 0.742 27 H 0.213 0.787 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -16.752 12.501 1.961 20.994 hybrid contribution -0.686 0.244 0.120 0.738 sum -17.438 12.745 2.082 21.700 Atomic orbital electron populations 1.22988 0.85039 1.04018 1.02361 1.72962 1.11736 1.24361 1.18584 1.21859 0.85670 0.92029 0.97416 1.19063 0.87549 0.89130 0.94359 1.42699 0.99660 1.56801 1.41518 1.21430 0.90264 1.00568 1.11222 1.22711 0.91681 0.88732 0.96843 1.98439 1.75332 1.24672 1.96194 1.74983 1.24406 0.90549 1.18821 1.46879 1.02703 1.04455 1.64911 1.21976 0.91881 0.80147 0.73479 1.90645 1.71076 1.28405 1.44921 1.18894 0.83892 0.98465 0.99063 1.21411 0.92910 0.92333 1.51660 0.92430 1.25823 0.96625 1.01961 0.94208 1.70078 1.03393 1.32296 1.50196 0.85343 0.78053 0.78926 0.78366 1.19889 1.19506 1.19547 0.88564 0.90089 0.90491 0.74543 0.74153 0.78672 0.93921 0.93957 0.92215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.29 127.77 1.19 1.32 16 2 N -0.55 -20.72 8.65 -360.38 -3.12 -23.84 16 3 C 0.31 10.89 7.57 135.89 1.03 11.92 16 4 C 0.22 4.81 6.83 39.90 0.27 5.08 16 5 N -0.85 -9.70 6.69 -47.78 -0.32 -10.02 16 6 C -0.20 -3.99 9.72 22.39 0.22 -3.77 16 7 C 0.21 5.70 7.36 85.50 0.63 6.33 16 8 Cl 0.03 0.58 29.08 -2.72 -0.08 0.50 16 9 N -0.27 -10.37 10.64 -49.69 -0.53 -10.90 16 10 N -0.37 -16.00 3.65 -303.48 -1.11 -17.10 16 11 C 0.53 28.05 7.71 87.65 0.68 28.72 16 12 O -0.49 -27.76 13.78 -2.91 -0.04 -27.80 16 13 C 0.04 2.07 4.69 29.10 0.14 2.21 16 14 C -0.54 -33.75 8.92 25.60 0.23 -33.52 16 15 H 0.06 3.70 6.75 -2.91 -0.02 3.68 16 16 C 0.01 0.78 5.46 84.66 0.46 1.24 16 17 N -0.92 -55.95 13.29 21.45 0.28 -55.67 16 18 Si 0.97 46.63 29.54 68.60 2.03 48.65 16 19 H -0.27 -13.26 7.11 99.48 0.71 -12.56 16 20 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 21 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 22 H 0.10 1.63 6.17 -2.38 -0.01 1.62 16 23 H 0.08 1.40 6.69 -2.39 -0.02 1.38 16 24 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.42 3.95 5.47 -92.71 -0.51 3.44 16 26 H 0.42 2.08 8.96 -92.70 -0.83 1.25 16 27 H 0.20 2.02 8.06 -2.91 -0.02 2.00 16 28 H 0.04 2.52 8.14 -2.38 -0.02 2.50 16 29 H 0.04 2.50 8.14 -2.39 -0.02 2.48 16 30 H 0.27 15.15 8.31 -92.70 -0.77 14.37 16 Total: -1.00 -79.83 279.05 1.84 -77.99 By element: Atomic # 1 Polarization: -1.22 SS G_CDS: -0.12 Total: -1.33 kcal Atomic # 6 Polarization: 14.69 SS G_CDS: 4.84 Total: 19.53 kcal Atomic # 7 Polarization: -112.75 SS G_CDS: -4.79 Total: -117.54 kcal Atomic # 8 Polarization: -27.76 SS G_CDS: -0.04 Total: -27.80 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.65 kcal Atomic # 17 Polarization: 0.58 SS G_CDS: -0.08 Total: 0.50 kcal Total: -79.83 1.84 -77.99 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143193928.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.303 kcal (2) G-P(sol) polarization free energy of solvation -79.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds