Wall clock time and date at job start Mon Mar 30 2020 01:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35814 * 116.99612 * 2 1 4 4 C 1.39034 * 120.86444 * 0.20582 * 3 2 1 5 5 C 1.38216 * 119.15751 * 180.24887 * 4 3 2 6 6 Cl 1.73600 * 119.53898 * 179.76643 * 5 4 3 7 7 N 1.32027 * 120.92410 * 359.79467 * 5 4 3 8 8 C 1.31968 * 121.89514 * 359.96833 * 7 5 4 9 9 C 1.38532 * 120.74035 * 0.02562 * 8 7 5 10 10 N 1.40204 * 120.49633 * 179.97438 * 9 8 7 11 11 C 1.34776 * 120.00373 * 24.72332 * 10 9 8 12 12 O 1.21294 * 119.99747 * 5.55346 * 11 10 9 13 13 C 1.50706 * 120.00037 * 185.55324 * 11 10 9 14 14 C 1.50702 * 109.46774 * 179.97438 * 13 11 10 15 15 H 1.08001 * 120.00290 * 0.02562 * 14 13 11 16 16 C 1.37882 * 119.99588 * 179.97438 * 14 13 11 17 17 N 1.31513 * 120.00286 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99730 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47168 * 90.00247 * 18 16 14 20 20 H 1.48502 * 109.46809 * 210.00433 * 18 16 14 21 21 H 1.48504 * 109.47196 * 330.00345 * 18 16 14 22 22 H 1.09003 * 109.47499 * 299.99575 * 1 2 3 23 23 H 1.08998 * 109.47096 * 60.00051 * 1 2 3 24 24 H 1.09009 * 109.46999 * 179.97438 * 1 2 3 25 25 H 1.07999 * 120.42068 * 0.02562 * 4 3 2 26 26 H 1.07997 * 119.62830 * 179.97438 * 8 7 5 27 27 H 0.97002 * 119.99957 * 204.45500 * 10 9 8 28 28 H 1.08999 * 109.46703 * 299.99616 * 13 11 10 29 29 H 1.08997 * 109.46919 * 60.00145 * 13 11 10 30 30 H 0.96993 * 120.00500 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2102 0.0000 4 6 1.3059 2.3874 0.0043 5 6 1.9697 3.5998 -0.0011 6 17 1.0560 5.0758 -0.0020 7 7 3.2890 3.6509 -0.0062 8 6 4.0291 2.5584 -0.0057 9 6 3.4406 1.3043 -0.0003 10 7 4.2319 0.1469 -0.0004 11 6 5.4893 0.1902 0.4829 12 8 5.9021 1.2019 1.0095 13 6 6.3823 -1.0185 0.3692 14 6 7.7246 -0.7105 0.9810 15 1 7.9122 0.2628 1.4097 16 6 8.7130 -1.6719 0.9943 17 7 8.4844 -2.8573 0.4727 18 14 10.3767 -1.2904 1.7533 19 1 10.3564 -1.6463 3.1949 20 1 11.4282 -2.0799 1.0632 21 1 10.6679 0.1582 1.6052 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0278 -0.0005 25 1 0.2264 2.3550 0.0081 26 1 5.1058 2.6429 -0.0103 27 1 3.8731 -0.6859 -0.3447 28 1 5.9267 -1.8575 0.8951 29 1 6.5129 -1.2760 -0.6819 30 1 9.1798 -3.5334 0.4817 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143193978.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:00 Heat of formation + Delta-G solvation = -66.722234 kcal Electronic energy + Delta-G solvation = -17781.186008 eV Core-core repulsion = 14602.061527 eV Total energy + Delta-G solvation = -3179.124481 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.24501 -40.48622 -39.34845 -37.67192 -36.02007 -35.13105 -32.53747 -31.90163 -30.22053 -28.48530 -26.10652 -24.48401 -24.04940 -21.62237 -19.78493 -18.96073 -18.72569 -17.96531 -17.38677 -16.94413 -16.51463 -16.35296 -16.17851 -15.52806 -15.36411 -15.23213 -14.78121 -14.22600 -13.84171 -13.49173 -13.04493 -12.81756 -12.64227 -12.59719 -12.39142 -12.31095 -12.05051 -11.74010 -11.46562 -10.92742 -10.66312 -10.61864 -10.23907 -9.15398 -8.25401 -6.32505 -0.30117 0.00489 0.67936 1.42810 1.43109 1.55445 1.65659 1.89178 2.05701 2.44549 2.50940 3.11032 3.35073 3.56749 3.70585 4.01242 4.18173 4.35835 4.39784 4.42762 4.53996 4.77375 4.96953 5.06904 5.21935 5.41727 5.72784 5.98431 6.03522 6.44461 6.60030 6.80303 7.19194 7.37728 8.86593 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.029197 B = 0.004230 C = 0.003740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.781201 B = 6617.821373 C = 7485.734929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.314 6.314 3 C 0.154 3.846 4 C -0.209 4.209 5 C 0.172 3.828 6 Cl -0.018 7.018 7 N -0.501 5.501 8 C 0.118 3.882 9 C 0.072 3.928 10 N -0.654 5.654 11 C 0.522 3.478 12 O -0.552 6.552 13 C 0.012 3.988 14 C -0.537 4.537 15 H 0.059 0.941 16 C 0.013 3.987 17 N -0.923 5.923 18 Si 0.962 3.038 19 H -0.273 1.273 20 H -0.275 1.275 21 H -0.274 1.274 22 H 0.073 0.927 23 H 0.078 0.922 24 H 0.127 0.873 25 H 0.189 0.811 26 H 0.169 0.831 27 H 0.427 0.573 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.519 6.106 -3.248 21.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.225 6.225 3 C 0.098 3.902 4 C -0.231 4.231 5 C 0.006 3.994 6 Cl 0.010 6.990 7 N -0.216 5.216 8 C -0.040 4.040 9 C -0.027 4.027 10 N -0.300 5.300 11 C 0.314 3.686 12 O -0.429 6.429 13 C -0.027 4.027 14 C -0.576 4.576 15 H 0.077 0.923 16 C -0.186 4.186 17 N -0.563 5.563 18 Si 0.787 3.213 19 H -0.198 1.198 20 H -0.200 1.200 21 H -0.198 1.198 22 H 0.091 0.909 23 H 0.096 0.904 24 H 0.146 0.854 25 H 0.206 0.794 26 H 0.186 0.814 27 H 0.266 0.734 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -19.690 7.280 -2.925 21.196 hybrid contribution 0.217 -0.877 0.196 0.925 sum -19.473 6.402 -2.728 20.680 Atomic orbital electron populations 1.23607 0.74708 1.06678 1.03262 1.86090 1.24849 1.23996 1.87614 1.18809 0.89455 0.86367 0.95587 1.21897 1.03221 0.88774 1.09213 1.21594 0.89375 0.88393 1.00031 1.98388 1.70046 1.34044 1.96483 1.67115 1.06388 1.32405 1.15657 1.22779 1.00761 0.84852 0.95591 1.18587 0.88634 0.89294 1.06146 1.43569 1.13225 1.11330 1.61921 1.21845 0.81014 0.91059 0.74697 1.90508 1.74361 1.34761 1.43260 1.19103 0.93256 0.90815 0.99538 1.21356 0.97565 0.99780 1.38874 0.92254 1.25730 1.02472 0.94678 0.95677 1.70012 1.35452 1.04862 1.45931 0.85483 0.78908 0.78235 0.78651 1.19828 1.20035 1.19836 0.90884 0.90367 0.85445 0.79371 0.81384 0.73430 0.93218 0.92984 0.92344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.84 113.37 1.12 1.22 16 2 O -0.31 -6.39 10.02 -91.46 -0.92 -7.31 16 3 C 0.15 3.85 6.75 22.84 0.15 4.01 16 4 C -0.21 -4.43 8.87 22.46 0.20 -4.23 16 5 C 0.17 4.56 7.27 84.66 0.62 5.17 16 6 Cl -0.02 -0.39 29.10 -2.72 -0.08 -0.47 16 7 N -0.50 -16.70 10.33 -186.44 -1.93 -18.62 16 8 C 0.12 4.22 9.90 84.74 0.84 5.06 16 9 C 0.07 2.34 6.47 38.25 0.25 2.59 16 10 N -0.65 -22.35 5.32 -302.81 -1.61 -23.96 16 11 C 0.52 22.91 7.64 87.66 0.67 23.58 16 12 O -0.55 -27.49 12.66 -3.07 -0.04 -27.53 16 13 C 0.01 0.60 5.46 29.10 0.16 0.76 16 14 C -0.54 -30.55 8.92 25.60 0.23 -30.32 16 15 H 0.06 3.53 6.75 -2.91 -0.02 3.51 16 16 C 0.01 0.75 5.46 84.66 0.46 1.21 16 17 N -0.92 -52.59 13.29 21.45 0.28 -52.31 16 18 Si 0.96 44.44 29.54 68.60 2.03 46.47 16 19 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 20 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 21 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 22 H 0.07 0.56 7.70 -2.39 -0.02 0.55 16 23 H 0.08 0.52 7.72 -2.39 -0.02 0.50 16 24 H 0.13 0.75 8.14 -2.38 -0.02 0.73 16 25 H 0.19 2.38 6.46 -2.91 -0.02 2.36 16 26 H 0.17 6.88 5.79 -2.91 -0.02 6.86 16 27 H 0.43 12.19 8.42 -92.71 -0.78 11.41 16 28 H 0.05 2.45 8.14 -2.39 -0.02 2.43 16 29 H 0.05 2.56 8.14 -2.39 -0.02 2.54 16 30 H 0.27 14.35 8.31 -92.71 -0.77 13.57 16 Total: -1.00 -67.96 283.73 2.85 -65.11 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: 0.42 Total: 9.57 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: 4.69 Total: 9.05 kcal Atomic # 7 Polarization: -91.64 SS G_CDS: -3.25 Total: -94.89 kcal Atomic # 8 Polarization: -33.88 SS G_CDS: -0.96 Total: -34.84 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -0.08 Total: -0.47 kcal Total: -67.96 2.85 -65.11 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143193978.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.612 kcal (2) G-P(sol) polarization free energy of solvation -67.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds