Wall clock time and date at job start Mon Mar 30 2020 01:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45198 * 109.47309 * 2 1 4 4 C 1.34675 * 116.99909 * 180.02562 * 3 2 1 5 5 O 1.21438 * 119.99838 * 359.97438 * 4 3 2 6 6 C 1.48048 * 119.99949 * 180.02562 * 4 3 2 7 7 C 1.40020 * 120.87964 * 359.97438 * 6 4 3 8 8 C 1.38222 * 119.16610 * 180.02562 * 7 6 4 9 9 Cl 1.73603 * 119.51041 * 179.97438 * 8 7 6 10 10 N 1.31936 * 120.97739 * 359.72500 * 8 7 6 11 11 C 1.32446 * 121.93398 * 0.56924 * 10 8 7 12 12 N 1.38835 * 119.63710 * 179.70990 * 11 10 8 13 13 C 1.36884 * 120.00183 * 179.72442 * 12 11 10 14 14 H 1.07995 * 119.99944 * 0.27748 * 13 12 11 15 15 C 1.38835 * 119.99767 * 179.97438 * 13 12 11 16 16 N 1.31550 * 120.00453 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99557 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46986 * 90.00480 * 17 15 13 19 19 H 1.48496 * 109.47029 * 210.00496 * 17 15 13 20 20 H 1.48499 * 109.47352 * 330.00326 * 17 15 13 21 21 C 1.39159 * 120.72667 * 359.42850 * 11 10 8 22 22 H 1.09004 * 109.47285 * 300.00558 * 1 2 3 23 23 H 1.09005 * 109.46899 * 60.00091 * 1 2 3 24 24 H 1.08995 * 109.47613 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46781 * 239.99374 * 2 1 3 26 26 H 1.08997 * 109.47053 * 120.00183 * 2 1 3 27 27 H 1.08003 * 120.41899 * 0.04652 * 7 6 4 28 28 H 0.96999 * 119.99837 * 359.72611 * 12 11 10 29 29 H 0.97000 * 120.00419 * 179.97438 * 16 15 13 30 30 H 1.07996 * 120.52718 * 180.29426 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3492 1.5453 -0.0005 5 8 4.0888 0.5822 -0.0005 6 6 3.9151 2.9134 0.0000 7 6 3.0793 4.0368 0.0005 8 6 3.6457 5.2977 0.0005 9 17 2.6178 6.6967 0.0005 10 7 4.9558 5.4537 0.0054 11 6 5.7843 4.4204 -0.0006 12 7 7.1552 4.6397 -0.0012 13 6 8.0184 3.5773 -0.0017 14 1 7.6329 2.5685 -0.0062 15 6 9.3893 3.7967 -0.0027 16 7 9.8588 5.0256 -0.0028 17 14 10.5671 2.3468 -0.0042 18 1 10.8781 1.9631 -1.4046 19 1 11.8208 2.7269 0.6950 20 1 9.9387 1.1978 0.6960 21 6 5.2959 3.1173 -0.0006 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 2.0057 3.9196 0.0013 28 1 7.5014 5.5458 -0.0012 29 1 10.8166 5.1789 -0.0031 30 1 5.9745 2.2772 -0.0007 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155530687.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:36 Heat of formation + Delta-G solvation = -72.390968 kcal Electronic energy + Delta-G solvation = -17649.819413 eV Core-core repulsion = 14470.449117 eV Total energy + Delta-G solvation = -3179.370296 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.77445 -40.68407 -37.84791 -37.71249 -36.95649 -34.18768 -33.52465 -32.38592 -30.28753 -27.05222 -26.44540 -23.80444 -23.67180 -22.14607 -19.98113 -19.43960 -18.45114 -17.61194 -17.51496 -16.94354 -16.51077 -16.07649 -15.65619 -15.53459 -15.33201 -15.00427 -14.45419 -13.67892 -13.56971 -13.53081 -13.06704 -12.94287 -12.79862 -12.49210 -12.28894 -12.22642 -12.11504 -11.90508 -11.85156 -11.51781 -10.99213 -10.55324 -10.51983 -8.99687 -8.63890 -5.92953 -0.36487 0.28723 0.83308 1.40896 1.42079 1.50882 1.54638 1.57344 2.18233 2.67587 2.92803 3.17843 3.54326 4.05526 4.10686 4.16754 4.21915 4.23148 4.38625 4.50907 4.72058 4.93042 4.98403 5.10357 5.13309 5.28360 5.39564 5.43337 5.74735 6.47780 6.60817 6.81628 7.19915 7.53579 8.53016 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.014710 B = 0.005923 C = 0.004236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.974037 B = 4725.802837 C = 6608.329475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.050 3.950 3 O -0.345 6.345 4 C 0.525 3.475 5 O -0.525 6.525 6 C -0.025 4.025 7 C -0.223 4.223 8 C 0.232 3.768 9 Cl -0.029 7.029 10 N -0.575 5.575 11 C 0.361 3.639 12 N -0.534 5.534 13 C -0.327 4.327 14 H 0.112 0.888 15 C -0.013 4.013 16 N -0.910 5.910 17 Si 1.003 2.997 18 H -0.268 1.268 19 H -0.275 1.275 20 H -0.260 1.260 21 C -0.198 4.198 22 H 0.070 0.930 23 H 0.070 0.930 24 H 0.103 0.897 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.167 0.833 28 H 0.399 0.601 29 H 0.283 0.717 30 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.107 -6.600 -0.005 16.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.024 4.024 3 O -0.261 6.261 4 C 0.370 3.630 5 O -0.415 6.415 6 C -0.034 4.034 7 C -0.251 4.251 8 C 0.062 3.938 9 Cl 0.000 7.000 10 N -0.301 5.301 11 C 0.118 3.882 12 N -0.140 5.140 13 C -0.457 4.457 14 H 0.130 0.870 15 C -0.216 4.216 16 N -0.547 5.547 17 Si 0.825 3.175 18 H -0.194 1.194 19 H -0.200 1.200 20 H -0.184 1.184 21 C -0.226 4.226 22 H 0.089 0.911 23 H 0.089 0.911 24 H 0.122 0.878 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.185 0.815 28 H 0.234 0.766 29 H 0.093 0.907 30 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -14.140 -6.038 0.006 15.375 hybrid contribution 0.763 -0.574 -0.016 0.955 sum -13.377 -6.612 -0.009 14.921 Atomic orbital electron populations 1.21832 0.89785 1.04554 1.03945 1.23443 0.97445 0.78553 1.02910 1.86557 1.21804 1.34298 1.83421 1.20945 0.81267 0.88797 0.72031 1.90804 1.61299 1.42845 1.46594 1.18932 0.92510 0.90485 1.01449 1.21316 1.01541 0.88629 1.13613 1.21125 0.87947 0.87880 0.96801 1.98352 1.63251 1.41938 1.96504 1.66069 1.04151 1.34939 1.24894 1.17894 0.85335 0.88065 0.96953 1.40892 1.00191 1.09785 1.63086 1.20120 0.87521 0.88554 1.49478 0.87037 1.26293 0.98928 1.00729 0.95606 1.69779 1.16022 1.21653 1.47222 0.84760 0.76853 0.76929 0.78957 1.19355 1.19967 1.18357 1.21280 0.94524 0.96758 1.10065 0.91084 0.91075 0.87846 0.91022 0.91033 0.81516 0.76587 0.90742 0.84689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 10.29 71.98 0.74 -1.10 16 2 C 0.05 1.01 6.19 71.98 0.45 1.45 16 3 O -0.34 -9.40 9.57 -55.84 -0.53 -9.94 16 4 C 0.52 17.97 7.92 70.43 0.56 18.53 16 5 O -0.53 -20.33 16.23 20.04 0.33 -20.00 16 6 C -0.03 -0.94 5.90 -19.92 -0.12 -1.06 16 7 C -0.22 -7.54 9.46 22.70 0.21 -7.33 16 8 C 0.23 8.63 7.27 84.67 0.62 9.24 16 9 Cl -0.03 -0.88 29.10 -2.72 -0.08 -0.96 16 10 N -0.58 -25.37 10.34 -184.26 -1.91 -27.28 16 11 C 0.36 16.84 7.61 133.11 1.01 17.86 16 12 N -0.53 -27.04 5.44 -189.29 -1.03 -28.07 16 13 C -0.33 -16.66 9.54 84.05 0.80 -15.85 16 14 H 0.11 5.46 5.64 -2.91 -0.02 5.44 16 15 C -0.01 -0.65 5.50 84.88 0.47 -0.19 16 16 N -0.91 -47.93 13.05 21.65 0.28 -47.65 16 17 Si 1.00 39.40 29.55 68.60 2.03 41.43 16 18 H -0.27 -10.27 7.11 99.48 0.71 -9.57 16 19 H -0.27 -10.51 7.11 99.48 0.71 -9.81 16 20 H -0.26 -9.88 7.11 99.48 0.71 -9.18 16 21 C -0.20 -8.59 8.90 22.82 0.20 -8.39 16 22 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 23 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 24 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.17 4.56 7.71 -2.91 -0.02 4.53 16 28 H 0.40 21.11 8.01 -92.71 -0.74 20.37 16 29 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 30 H 0.14 6.07 5.62 -2.91 -0.02 6.05 16 Total: -1.00 -57.42 289.19 4.48 -52.94 By element: Atomic # 1 Polarization: 25.91 SS G_CDS: 0.45 Total: 26.36 kcal Atomic # 6 Polarization: 8.21 SS G_CDS: 4.94 Total: 13.16 kcal Atomic # 7 Polarization: -100.34 SS G_CDS: -2.65 Total: -102.99 kcal Atomic # 8 Polarization: -29.73 SS G_CDS: -0.21 Total: -29.94 kcal Atomic # 14 Polarization: 39.40 SS G_CDS: 2.03 Total: 41.43 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -0.08 Total: -0.96 kcal Total: -57.42 4.48 -52.94 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155530687.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.450 kcal (2) G-P(sol) polarization free energy of solvation -57.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds