Wall clock time and date at job start Mon Mar 30 2020 01:05:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 O 1.45198 * 109.46978 * 2 1
4 4 C 1.34681 * 116.99710 * 179.97438 * 3 2 1
5 5 O 1.21434 * 120.00186 * 359.97438 * 4 3 2
6 6 C 1.47975 * 119.99624 * 179.97438 * 4 3 2
7 7 C 1.39629 * 120.89673 * 0.02562 * 6 4 3
8 8 C 1.39102 * 118.93666 * 179.72419 * 7 6 4
9 9 N 1.38888 * 119.62362 * 180.23302 * 8 7 6
10 10 C 1.36880 * 120.00047 * 359.97438 * 9 8 7
11 11 H 1.07996 * 120.00130 * 0.02562 * 10 9 8
12 12 C 1.38824 * 119.99606 * 179.97438 * 10 9 8
13 13 N 1.31557 * 120.00390 * 0.02562 * 12 10 9
14 14 Si 1.86807 * 119.99808 * 179.97438 * 12 10 9
15 15 H 1.48499 * 109.46761 * 89.99946 * 14 12 10
16 16 H 1.48495 * 109.47398 * 210.00330 * 14 12 10
17 17 H 1.48506 * 109.46848 * 330.00493 * 14 12 10
18 18 N 1.32458 * 120.75121 * 0.25612 * 8 7 6
19 19 C 1.31791 * 121.97930 * 359.97438 * 18 8 7
20 20 C 1.38263 * 120.98423 * 0.02562 * 19 18 8
21 21 Cl 1.73594 * 120.43009 * 180.02562 * 20 19 18
22 22 H 1.08996 * 109.47349 * 60.00009 * 1 2 3
23 23 H 1.09005 * 109.46707 * 180.02562 * 1 2 3
24 24 H 1.09003 * 109.47020 * 300.00026 * 1 2 3
25 25 H 1.08994 * 109.47170 * 239.99697 * 2 1 3
26 26 H 1.09002 * 109.46693 * 119.99770 * 2 1 3
27 27 H 1.08002 * 120.53360 * 0.02562 * 7 6 4
28 28 H 0.97003 * 119.99717 * 180.02562 * 9 8 7
29 29 H 0.97000 * 120.00039 * 180.02562 * 13 12 10
30 30 H 1.08002 * 119.50588 * 179.97438 * 19 18 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0140 1.3690 0.0000
4 6 3.3492 1.5454 0.0005
5 8 4.0889 0.5824 0.0015
6 6 3.9147 2.9128 0.0000
7 6 3.0816 4.0333 -0.0005
8 6 3.6568 5.2997 0.0048
9 7 2.8415 6.4241 0.0093
10 6 1.4801 6.2823 0.0079
11 1 1.0399 5.2961 0.0037
12 6 0.6652 7.4062 0.0129
13 7 1.2014 8.6075 0.0185
14 14 -1.1928 7.2127 0.0102
15 1 -1.6864 7.1543 1.4096
16 1 -1.8102 8.3709 -0.6845
17 1 -1.5589 5.9589 -0.6965
18 7 4.9734 5.4456 0.0053
19 6 5.7902 4.4114 0.0012
20 6 5.3012 3.1181 -0.0043
21 17 6.3902 1.7663 -0.0089
22 1 -0.3634 0.5138 -0.8899
23 1 -0.3633 -1.0277 0.0005
24 1 -0.3633 0.5139 0.8900
25 1 1.8934 -0.5139 -0.8899
26 1 1.8933 -0.5138 0.8900
27 1 2.0077 3.9185 -0.0001
28 1 3.2369 7.3099 0.0127
29 1 0.6319 9.3928 0.0223
30 1 6.8575 4.5765 0.0013
RHF calculation, no. of doubly occupied orbitals= 46
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001155531351.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:05:37
Heat of formation + Delta-G solvation = -64.938746 kcal
Electronic energy + Delta-G solvation = -17942.581012 eV
Core-core repulsion = 14763.533869 eV
Total energy + Delta-G solvation = -3179.047143 eV
No. of doubly occupied orbitals = 46
Molecular weight
(most abundant/longest-lived isotopes) = 270.056 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-41.69137 -40.61064 -37.88629 -37.32104 -36.81309 -33.96239 -33.70649 -32.32725
-30.16500 -26.92352 -26.32953 -24.24417 -23.33506 -22.03133 -20.06284 -19.37212
-18.21750 -17.57880 -17.50091 -16.92590 -16.77058 -15.92461 -15.52373 -15.38221
-15.13598 -14.86741 -14.26298 -13.81299 -13.56740 -13.44580 -13.15273 -12.91902
-12.77379 -12.49228 -12.36116 -12.27881 -12.09174 -11.86731 -11.50110 -11.32507
-10.80300 -10.65502 -10.27821 -8.86334 -8.61956 -5.88385 -0.33814 0.35923
1.39446 1.45169 1.46371 1.57503 1.61261 1.62288 2.19849 2.72644
2.92387 3.23649 3.57291 3.81783 4.04053 4.09614 4.20799 4.26448
4.36388 4.71299 4.78830 4.85524 4.94631 4.99262 5.13133 5.27983
5.39744 5.46452 5.79844 6.55057 6.66776 6.90987 7.23542 7.60162
8.54766
Molecular weight = 270.06amu
Principal moments of inertia in cm(-1)
A = 0.015858 B = 0.006640 C = 0.004696
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1765.211075 B = 4215.762242 C = 5960.519536
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C 0.054 3.946
3 O -0.357 6.357
4 C 0.512 3.488
5 O -0.500 6.500
6 C -0.034 4.034
7 C -0.190 4.190
8 C 0.338 3.662
9 N -0.530 5.530
10 C -0.325 4.325
11 H 0.117 0.883
12 C -0.015 4.015
13 N -0.911 5.911
14 Si 1.003 2.997
15 H -0.269 1.269
16 H -0.279 1.279
17 H -0.254 1.254
18 N -0.563 5.563
19 C 0.183 3.817
20 C -0.177 4.177
21 Cl -0.054 7.054
22 H 0.065 0.935
23 H 0.107 0.893
24 H 0.065 0.935
25 H 0.074 0.926
26 H 0.074 0.926
27 H 0.146 0.854
28 H 0.399 0.601
29 H 0.282 0.718
30 H 0.188 0.812
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.909 -12.047 -0.051 12.081
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.019 4.019
3 O -0.274 6.274
4 C 0.356 3.644
5 O -0.388 6.388
6 C -0.043 4.043
7 C -0.218 4.218
8 C 0.095 3.905
9 N -0.135 5.135
10 C -0.455 4.455
11 H 0.135 0.865
12 C -0.217 4.217
13 N -0.547 5.547
14 Si 0.824 3.176
15 H -0.194 1.194
16 H -0.204 1.204
17 H -0.177 1.177
18 N -0.285 5.285
19 C 0.019 3.981
20 C -0.213 4.213
21 Cl -0.026 7.026
22 H 0.084 0.916
23 H 0.125 0.875
24 H 0.084 0.916
25 H 0.092 0.908
26 H 0.092 0.908
27 H 0.163 0.837
28 H 0.234 0.766
29 H 0.092 0.908
30 H 0.205 0.795
Dipole moment (debyes) X Y Z Total
from point charges -0.758 -11.315 -0.053 11.340
hybrid contribution -0.637 -0.313 0.015 0.710
sum -1.395 -11.628 -0.038 11.711
Atomic orbital electron populations
1.21848 0.90468 1.04532 1.03580 1.23374 0.97027 0.78575 1.02962
1.86595 1.22769 1.34393 1.83685 1.21008 0.81164 0.89196 0.73009
1.90836 1.60384 1.42261 1.45343 1.18978 0.92308 0.90432 1.02608
1.21444 1.00963 0.89815 1.09528 1.18450 0.87796 0.87392 0.96878
1.40953 1.05105 1.05124 1.62309 1.20191 0.80277 0.95979 1.49038
0.86510 1.26329 1.05901 0.93885 0.95618 1.69785 1.38988 0.98815
1.47129 0.84762 0.75074 0.78781 0.78941 1.19424 1.20404 1.17737
1.67128 1.02966 1.34702 1.23669 1.22528 1.00028 0.84447 0.91120
1.21270 0.89219 0.90459 1.20372 1.98303 1.62428 1.44435 1.97392
0.91588 0.87474 0.91561 0.90804 0.90794 0.83677 0.76633 0.90795
0.79544
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.55 10.29 71.98 0.74 -1.81 16
2 C 0.05 1.26 6.19 71.98 0.45 1.70 16
3 O -0.36 -11.42 9.57 -55.90 -0.53 -11.95 16
4 C 0.51 18.41 7.92 70.40 0.56 18.97 16
5 O -0.50 -18.53 13.94 20.05 0.28 -18.25 16
6 C -0.03 -1.33 5.91 -19.89 -0.12 -1.45 16
7 C -0.19 -7.83 8.92 22.81 0.20 -7.63 16
8 C 0.34 15.10 7.61 133.08 1.01 16.11 16
9 N -0.53 -25.66 5.44 -189.30 -1.03 -26.69 16
10 C -0.33 -15.69 9.54 84.05 0.80 -14.88 16
11 H 0.12 5.28 5.64 -2.91 -0.02 5.27 16
12 C -0.01 -0.71 5.50 84.87 0.47 -0.24 16
13 N -0.91 -46.45 13.05 21.65 0.28 -46.17 16
14 Si 1.00 37.25 29.55 68.60 2.03 39.28 16
15 H -0.27 -9.77 7.11 99.48 0.71 -9.06 16
16 H -0.28 -10.27 7.11 99.48 0.71 -9.57 16
17 H -0.25 -8.89 7.11 99.48 0.71 -8.18 16
18 N -0.56 -23.58 10.36 -193.27 -2.00 -25.58 16
19 C 0.18 6.52 10.97 84.70 0.93 7.45 16
20 C -0.18 -6.48 6.38 22.74 0.15 -6.33 16
21 Cl -0.05 -1.78 26.22 -2.72 -0.07 -1.85 16
22 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16
23 H 0.11 1.22 8.14 -2.38 -0.02 1.20 16
24 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16
25 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16
26 H 0.07 1.64 8.14 -2.39 -0.02 1.63 16
27 H 0.15 5.90 5.58 -2.91 -0.02 5.88 16
28 H 0.40 20.24 8.01 -92.71 -0.74 19.50 16
29 H 0.28 13.49 8.31 -92.71 -0.77 12.72 16
30 H 0.19 5.23 8.06 -2.91 -0.02 5.20 16
Total: -1.00 -55.37 285.01 4.59 -50.78
By element:
Atomic # 1 Polarization: 28.08 SS G_CDS: 0.45 Total: 28.53 kcal
Atomic # 6 Polarization: 6.71 SS G_CDS: 5.19 Total: 11.90 kcal
Atomic # 7 Polarization: -95.69 SS G_CDS: -2.75 Total: -98.44 kcal
Atomic # 8 Polarization: -29.94 SS G_CDS: -0.26 Total: -30.20 kcal
Atomic # 14 Polarization: 37.25 SS G_CDS: 2.03 Total: 39.28 kcal
Atomic # 17 Polarization: -1.78 SS G_CDS: -0.07 Total: -1.85 kcal
Total: -55.37 4.59 -50.78 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001155531351.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -14.157 kcal
(2) G-P(sol) polarization free energy of solvation -55.372 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.529 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.591 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.782 kcal
(6) G-S(sol) free energy of system = (1) + (5) -64.939 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds