Wall clock time and date at job start Mon Mar 30 2020 01:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45198 * 109.46978 * 2 1 4 4 C 1.34681 * 116.99710 * 179.97438 * 3 2 1 5 5 O 1.21434 * 120.00186 * 359.97438 * 4 3 2 6 6 C 1.47975 * 119.99624 * 179.97438 * 4 3 2 7 7 C 1.39629 * 120.89673 * 0.02562 * 6 4 3 8 8 C 1.39102 * 118.93666 * 179.72419 * 7 6 4 9 9 N 1.38888 * 119.62362 * 180.23302 * 8 7 6 10 10 C 1.36880 * 120.00047 * 359.97438 * 9 8 7 11 11 H 1.07996 * 120.00130 * 0.02562 * 10 9 8 12 12 C 1.38824 * 119.99606 * 179.97438 * 10 9 8 13 13 N 1.31557 * 120.00390 * 0.02562 * 12 10 9 14 14 Si 1.86807 * 119.99808 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.46761 * 89.99946 * 14 12 10 16 16 H 1.48495 * 109.47398 * 210.00330 * 14 12 10 17 17 H 1.48506 * 109.46848 * 330.00493 * 14 12 10 18 18 N 1.32458 * 120.75121 * 0.25612 * 8 7 6 19 19 C 1.31791 * 121.97930 * 359.97438 * 18 8 7 20 20 C 1.38263 * 120.98423 * 0.02562 * 19 18 8 21 21 Cl 1.73594 * 120.43009 * 180.02562 * 20 19 18 22 22 H 1.08996 * 109.47349 * 60.00009 * 1 2 3 23 23 H 1.09005 * 109.46707 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47020 * 300.00026 * 1 2 3 25 25 H 1.08994 * 109.47170 * 239.99697 * 2 1 3 26 26 H 1.09002 * 109.46693 * 119.99770 * 2 1 3 27 27 H 1.08002 * 120.53360 * 0.02562 * 7 6 4 28 28 H 0.97003 * 119.99717 * 180.02562 * 9 8 7 29 29 H 0.97000 * 120.00039 * 180.02562 * 13 12 10 30 30 H 1.08002 * 119.50588 * 179.97438 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3492 1.5454 0.0005 5 8 4.0889 0.5824 0.0015 6 6 3.9147 2.9128 0.0000 7 6 3.0816 4.0333 -0.0005 8 6 3.6568 5.2997 0.0048 9 7 2.8415 6.4241 0.0093 10 6 1.4801 6.2823 0.0079 11 1 1.0399 5.2961 0.0037 12 6 0.6652 7.4062 0.0129 13 7 1.2014 8.6075 0.0185 14 14 -1.1928 7.2127 0.0102 15 1 -1.6864 7.1543 1.4096 16 1 -1.8102 8.3709 -0.6845 17 1 -1.5589 5.9589 -0.6965 18 7 4.9734 5.4456 0.0053 19 6 5.7902 4.4114 0.0012 20 6 5.3012 3.1181 -0.0043 21 17 6.3902 1.7663 -0.0089 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 2.0077 3.9185 -0.0001 28 1 3.2369 7.3099 0.0127 29 1 0.6319 9.3928 0.0223 30 1 6.8575 4.5765 0.0013 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155531351.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:37 Heat of formation + Delta-G solvation = -64.938746 kcal Electronic energy + Delta-G solvation = -17942.581012 eV Core-core repulsion = 14763.533869 eV Total energy + Delta-G solvation = -3179.047143 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.69137 -40.61064 -37.88629 -37.32104 -36.81309 -33.96239 -33.70649 -32.32725 -30.16500 -26.92352 -26.32953 -24.24417 -23.33506 -22.03133 -20.06284 -19.37212 -18.21750 -17.57880 -17.50091 -16.92590 -16.77058 -15.92461 -15.52373 -15.38221 -15.13598 -14.86741 -14.26298 -13.81299 -13.56740 -13.44580 -13.15273 -12.91902 -12.77379 -12.49228 -12.36116 -12.27881 -12.09174 -11.86731 -11.50110 -11.32507 -10.80300 -10.65502 -10.27821 -8.86334 -8.61956 -5.88385 -0.33814 0.35923 1.39446 1.45169 1.46371 1.57503 1.61261 1.62288 2.19849 2.72644 2.92387 3.23649 3.57291 3.81783 4.04053 4.09614 4.20799 4.26448 4.36388 4.71299 4.78830 4.85524 4.94631 4.99262 5.13133 5.27983 5.39744 5.46452 5.79844 6.55057 6.66776 6.90987 7.23542 7.60162 8.54766 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.015858 B = 0.006640 C = 0.004696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.211075 B = 4215.762242 C = 5960.519536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.054 3.946 3 O -0.357 6.357 4 C 0.512 3.488 5 O -0.500 6.500 6 C -0.034 4.034 7 C -0.190 4.190 8 C 0.338 3.662 9 N -0.530 5.530 10 C -0.325 4.325 11 H 0.117 0.883 12 C -0.015 4.015 13 N -0.911 5.911 14 Si 1.003 2.997 15 H -0.269 1.269 16 H -0.279 1.279 17 H -0.254 1.254 18 N -0.563 5.563 19 C 0.183 3.817 20 C -0.177 4.177 21 Cl -0.054 7.054 22 H 0.065 0.935 23 H 0.107 0.893 24 H 0.065 0.935 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.146 0.854 28 H 0.399 0.601 29 H 0.282 0.718 30 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.909 -12.047 -0.051 12.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.019 4.019 3 O -0.274 6.274 4 C 0.356 3.644 5 O -0.388 6.388 6 C -0.043 4.043 7 C -0.218 4.218 8 C 0.095 3.905 9 N -0.135 5.135 10 C -0.455 4.455 11 H 0.135 0.865 12 C -0.217 4.217 13 N -0.547 5.547 14 Si 0.824 3.176 15 H -0.194 1.194 16 H -0.204 1.204 17 H -0.177 1.177 18 N -0.285 5.285 19 C 0.019 3.981 20 C -0.213 4.213 21 Cl -0.026 7.026 22 H 0.084 0.916 23 H 0.125 0.875 24 H 0.084 0.916 25 H 0.092 0.908 26 H 0.092 0.908 27 H 0.163 0.837 28 H 0.234 0.766 29 H 0.092 0.908 30 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -0.758 -11.315 -0.053 11.340 hybrid contribution -0.637 -0.313 0.015 0.710 sum -1.395 -11.628 -0.038 11.711 Atomic orbital electron populations 1.21848 0.90468 1.04532 1.03580 1.23374 0.97027 0.78575 1.02962 1.86595 1.22769 1.34393 1.83685 1.21008 0.81164 0.89196 0.73009 1.90836 1.60384 1.42261 1.45343 1.18978 0.92308 0.90432 1.02608 1.21444 1.00963 0.89815 1.09528 1.18450 0.87796 0.87392 0.96878 1.40953 1.05105 1.05124 1.62309 1.20191 0.80277 0.95979 1.49038 0.86510 1.26329 1.05901 0.93885 0.95618 1.69785 1.38988 0.98815 1.47129 0.84762 0.75074 0.78781 0.78941 1.19424 1.20404 1.17737 1.67128 1.02966 1.34702 1.23669 1.22528 1.00028 0.84447 0.91120 1.21270 0.89219 0.90459 1.20372 1.98303 1.62428 1.44435 1.97392 0.91588 0.87474 0.91561 0.90804 0.90794 0.83677 0.76633 0.90795 0.79544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 10.29 71.98 0.74 -1.81 16 2 C 0.05 1.26 6.19 71.98 0.45 1.70 16 3 O -0.36 -11.42 9.57 -55.90 -0.53 -11.95 16 4 C 0.51 18.41 7.92 70.40 0.56 18.97 16 5 O -0.50 -18.53 13.94 20.05 0.28 -18.25 16 6 C -0.03 -1.33 5.91 -19.89 -0.12 -1.45 16 7 C -0.19 -7.83 8.92 22.81 0.20 -7.63 16 8 C 0.34 15.10 7.61 133.08 1.01 16.11 16 9 N -0.53 -25.66 5.44 -189.30 -1.03 -26.69 16 10 C -0.33 -15.69 9.54 84.05 0.80 -14.88 16 11 H 0.12 5.28 5.64 -2.91 -0.02 5.27 16 12 C -0.01 -0.71 5.50 84.87 0.47 -0.24 16 13 N -0.91 -46.45 13.05 21.65 0.28 -46.17 16 14 Si 1.00 37.25 29.55 68.60 2.03 39.28 16 15 H -0.27 -9.77 7.11 99.48 0.71 -9.06 16 16 H -0.28 -10.27 7.11 99.48 0.71 -9.57 16 17 H -0.25 -8.89 7.11 99.48 0.71 -8.18 16 18 N -0.56 -23.58 10.36 -193.27 -2.00 -25.58 16 19 C 0.18 6.52 10.97 84.70 0.93 7.45 16 20 C -0.18 -6.48 6.38 22.74 0.15 -6.33 16 21 Cl -0.05 -1.78 26.22 -2.72 -0.07 -1.85 16 22 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 23 H 0.11 1.22 8.14 -2.38 -0.02 1.20 16 24 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.07 1.64 8.14 -2.39 -0.02 1.63 16 27 H 0.15 5.90 5.58 -2.91 -0.02 5.88 16 28 H 0.40 20.24 8.01 -92.71 -0.74 19.50 16 29 H 0.28 13.49 8.31 -92.71 -0.77 12.72 16 30 H 0.19 5.23 8.06 -2.91 -0.02 5.20 16 Total: -1.00 -55.37 285.01 4.59 -50.78 By element: Atomic # 1 Polarization: 28.08 SS G_CDS: 0.45 Total: 28.53 kcal Atomic # 6 Polarization: 6.71 SS G_CDS: 5.19 Total: 11.90 kcal Atomic # 7 Polarization: -95.69 SS G_CDS: -2.75 Total: -98.44 kcal Atomic # 8 Polarization: -29.94 SS G_CDS: -0.26 Total: -30.20 kcal Atomic # 14 Polarization: 37.25 SS G_CDS: 2.03 Total: 39.28 kcal Atomic # 17 Polarization: -1.78 SS G_CDS: -0.07 Total: -1.85 kcal Total: -55.37 4.59 -50.78 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155531351.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.157 kcal (2) G-P(sol) polarization free energy of solvation -55.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds