Wall clock time and date at job start Mon Mar 30 2020 01:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45202 * 109.47210 * 2 1 4 4 C 1.34778 * 116.99741 * 179.97438 * 3 2 1 5 5 O 1.21531 * 120.00450 * 0.02562 * 4 3 2 6 6 C 1.47261 * 119.99974 * 179.97438 * 4 3 2 7 7 C 1.39592 * 120.62891 * 354.31260 * 6 4 3 8 8 N 1.31612 * 120.63956 * 179.97438 * 7 6 4 9 9 C 1.32298 * 122.13957 * 0.02562 * 8 7 6 10 10 Cl 1.73592 * 119.39917 * 180.02562 * 9 8 7 11 11 C 1.38006 * 121.20804 * 359.97438 * 9 8 7 12 12 C 1.39482 * 119.19116 * 0.28459 * 11 9 8 13 13 N 1.38322 * 120.95959 * 179.70184 * 12 11 9 14 14 C 1.36833 * 119.99753 * 5.92744 * 13 12 11 15 15 H 1.08001 * 119.99669 * 359.97438 * 14 13 12 16 16 C 1.38895 * 119.99776 * 180.02562 * 14 13 12 17 17 N 1.31505 * 120.00216 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 120.00028 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.46736 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47027 * 119.99366 * 18 16 14 21 21 H 1.48497 * 109.47245 * 239.99915 * 18 16 14 22 22 H 1.09002 * 109.46641 * 59.99833 * 1 2 3 23 23 H 1.08996 * 109.47113 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47089 * 300.00362 * 1 2 3 25 25 H 1.08998 * 109.47089 * 239.99638 * 2 1 3 26 26 H 1.09005 * 109.47124 * 120.00002 * 2 1 3 27 27 H 1.07995 * 119.67513 * 0.02562 * 7 6 4 28 28 H 1.07999 * 120.40420 * 180.02562 * 11 9 8 29 29 H 0.97001 * 120.00227 * 185.91953 * 13 12 11 30 30 H 0.96998 * 119.99473 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3502 1.5455 0.0005 5 8 4.0905 0.5817 0.0005 6 6 3.9131 2.9062 0.0000 7 6 3.0806 4.0203 -0.1201 8 7 3.5834 5.2365 -0.1201 9 6 4.8824 5.4611 -0.0086 10 17 5.4685 7.0950 -0.0162 11 6 5.7800 4.4201 0.1147 12 6 5.3050 3.1086 0.1154 13 7 6.1726 2.0376 0.2307 14 6 7.5023 2.2568 0.4678 15 1 7.8744 3.2661 0.5645 16 6 8.3737 1.1813 0.5830 17 7 7.9207 -0.0476 0.4648 18 14 10.1891 1.4805 0.9060 19 1 10.4413 2.9410 0.9978 20 1 10.5784 0.8303 2.1830 21 1 10.9905 0.9081 -0.2054 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 2.0135 3.8827 -0.2131 28 1 6.8378 4.6183 0.2054 29 1 5.8385 1.1311 0.1436 30 1 8.5292 -0.7986 0.5456 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155531509.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:39 Heat of formation + Delta-G solvation = -82.152502 kcal Electronic energy + Delta-G solvation = -18066.737064 eV Core-core repulsion = 14886.943476 eV Total energy + Delta-G solvation = -3179.793588 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.70168 -40.34214 -38.16501 -37.40209 -37.13906 -34.41245 -32.93681 -31.73349 -31.15028 -27.20777 -25.80622 -24.01635 -23.25165 -22.30273 -19.98648 -19.07495 -18.82448 -17.68474 -17.47885 -17.02826 -16.56954 -15.65179 -15.47603 -15.36012 -15.31329 -14.78985 -14.29313 -13.78344 -13.71051 -13.55500 -13.19465 -12.90810 -12.73655 -12.70832 -12.44921 -12.31615 -12.15446 -12.09381 -11.47192 -11.37985 -11.06976 -10.34594 -9.90709 -9.29651 -8.77135 -6.06392 -0.27177 0.66852 0.93280 1.38260 1.46596 1.54990 1.58698 1.80519 2.13053 2.70810 3.11712 3.13807 3.77643 3.95638 4.05339 4.15585 4.25446 4.31842 4.40917 4.76004 4.81132 4.88876 4.98261 5.07120 5.17108 5.23356 5.39378 5.57668 5.75157 6.51049 6.83987 7.05968 7.13243 7.30390 8.37043 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.011449 B = 0.008045 C = 0.004748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2445.022433 B = 3479.621681 C = 5895.787089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.052 3.948 3 O -0.352 6.352 4 C 0.519 3.481 5 O -0.564 6.564 6 C -0.336 4.336 7 C 0.245 3.755 8 N -0.581 5.581 9 C 0.220 3.780 10 Cl -0.035 7.035 11 C -0.244 4.244 12 C 0.220 3.780 13 N -0.502 5.502 14 C -0.341 4.341 15 H 0.123 0.877 16 C -0.014 4.014 17 N -0.894 5.894 18 Si 1.013 2.987 19 H -0.247 1.247 20 H -0.271 1.271 21 H -0.271 1.271 22 H 0.073 0.927 23 H 0.100 0.900 24 H 0.071 0.929 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.192 0.808 28 H 0.141 0.859 29 H 0.415 0.585 30 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.654 3.463 -0.334 8.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.021 4.021 3 O -0.268 6.268 4 C 0.370 3.630 5 O -0.457 6.457 6 C -0.350 4.350 7 C 0.084 3.916 8 N -0.301 5.301 9 C 0.066 3.934 10 Cl -0.007 7.007 11 C -0.271 4.271 12 C 0.082 3.918 13 N -0.107 5.107 14 C -0.471 4.471 15 H 0.141 0.859 16 C -0.219 4.219 17 N -0.527 5.527 18 Si 0.833 3.167 19 H -0.170 1.170 20 H -0.197 1.197 21 H -0.196 1.196 22 H 0.092 0.908 23 H 0.119 0.881 24 H 0.090 0.910 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.208 0.792 28 H 0.159 0.841 29 H 0.261 0.739 30 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.564 3.672 -0.359 8.416 hybrid contribution 1.431 -1.438 0.149 2.034 sum -6.133 2.235 -0.210 6.531 Atomic orbital electron populations 1.21800 0.89469 1.04404 1.04004 1.23271 0.97497 0.79391 1.01977 1.86505 1.22351 1.33316 1.84653 1.20916 0.80775 0.89080 0.72220 1.90607 1.60254 1.43773 1.51095 1.19124 0.92287 0.91881 1.31689 1.22797 0.99828 0.84201 0.84821 1.67036 1.12630 1.24320 1.26105 1.21299 0.90276 0.86121 0.95744 1.98339 1.86727 1.19210 1.96396 1.20931 1.00841 0.89450 1.15893 1.17882 0.88479 0.88594 0.96824 1.42141 1.07122 1.08449 1.52982 1.20572 0.83127 0.96566 1.46855 0.85934 1.26693 1.06559 0.93800 0.94831 1.69859 1.39286 0.99775 1.43816 0.84577 0.73811 0.80045 0.78255 1.17000 1.19651 1.19565 0.90810 0.88146 0.90991 0.91984 0.92261 0.79153 0.84136 0.73922 0.90241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 10.29 71.98 0.74 -1.72 16 2 C 0.05 1.43 6.20 71.98 0.45 1.88 16 3 O -0.35 -11.81 9.51 -56.89 -0.54 -12.35 16 4 C 0.52 21.85 7.88 70.19 0.55 22.40 16 5 O -0.56 -27.69 13.59 19.74 0.27 -27.42 16 6 C -0.34 -14.21 5.91 -19.87 -0.12 -14.33 16 7 C 0.25 8.84 10.79 85.05 0.92 9.76 16 8 N -0.58 -22.02 10.31 -185.83 -1.92 -23.93 16 9 C 0.22 8.46 7.26 84.57 0.61 9.07 16 10 Cl -0.04 -1.13 29.09 -2.72 -0.08 -1.21 16 11 C -0.24 -10.27 9.10 22.51 0.20 -10.06 16 12 C 0.22 10.25 6.66 39.13 0.26 10.51 16 13 N -0.50 -26.17 5.30 -183.07 -0.97 -27.14 16 14 C -0.34 -17.27 9.56 84.07 0.80 -16.47 16 15 H 0.12 5.71 5.79 -2.91 -0.02 5.70 16 16 C -0.01 -0.70 5.50 84.90 0.47 -0.23 16 17 N -0.89 -47.99 13.05 21.66 0.28 -47.71 16 18 Si 1.01 37.91 29.55 68.60 2.03 39.94 16 19 H -0.25 -8.58 7.11 99.48 0.71 -7.87 16 20 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 21 H -0.27 -9.90 7.11 99.48 0.71 -9.19 16 22 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 23 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 27 H 0.19 5.44 7.63 -2.91 -0.02 5.42 16 28 H 0.14 5.72 6.12 -2.91 -0.02 5.71 16 29 H 0.42 23.23 4.60 -92.71 -0.43 22.80 16 30 H 0.29 14.20 8.31 -92.71 -0.77 13.42 16 Total: -1.00 -59.97 284.02 4.73 -55.24 By element: Atomic # 1 Polarization: 33.00 SS G_CDS: 0.77 Total: 33.77 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: 4.89 Total: 10.81 kcal Atomic # 7 Polarization: -96.17 SS G_CDS: -2.60 Total: -98.78 kcal Atomic # 8 Polarization: -39.50 SS G_CDS: -0.27 Total: -39.77 kcal Atomic # 14 Polarization: 37.91 SS G_CDS: 2.03 Total: 39.94 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -0.08 Total: -1.21 kcal Total: -59.97 4.73 -55.24 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155531509.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.912 kcal (2) G-P(sol) polarization free energy of solvation -59.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds