Wall clock time and date at job start Mon Mar 30 2020 01:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45199 * 109.47352 * 2 1 4 4 C 1.34766 * 116.99872 * 180.02562 * 3 2 1 5 5 O 1.21511 * 120.00246 * 359.97438 * 4 3 2 6 6 C 1.47405 * 119.99968 * 179.97438 * 4 3 2 7 7 C 1.39725 * 120.47310 * 359.97438 * 6 4 3 8 8 N 1.31536 * 120.66873 * 180.02562 * 7 6 4 9 9 C 1.32693 * 121.79615 * 0.02562 * 8 7 6 10 10 N 1.38358 * 119.55018 * 179.97438 * 9 8 7 11 11 C 1.36826 * 120.00198 * 0.02562 * 10 9 8 12 12 H 1.08001 * 119.99999 * 359.97438 * 11 10 9 13 13 C 1.38899 * 120.00196 * 179.97438 * 11 10 9 14 14 N 1.31495 * 119.99860 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00131 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47013 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46942 * 119.99791 * 15 13 11 18 18 H 1.48499 * 109.47469 * 240.00403 * 15 13 11 19 19 C 1.39567 * 120.89784 * 359.97438 * 9 8 7 20 20 Cl 1.73603 * 120.38682 * 180.02562 * 19 9 8 21 21 C 1.37974 * 119.22967 * 359.97438 * 19 9 8 22 22 H 1.08997 * 109.47514 * 180.02562 * 1 2 3 23 23 H 1.09012 * 109.46976 * 300.00324 * 1 2 3 24 24 H 1.08997 * 109.47231 * 59.99971 * 1 2 3 25 25 H 1.09004 * 109.47123 * 239.99397 * 2 1 3 26 26 H 1.09005 * 109.47074 * 119.99751 * 2 1 3 27 27 H 1.07994 * 119.66182 * 359.74184 * 7 6 4 28 28 H 0.96999 * 120.00094 * 180.02562 * 10 9 8 29 29 H 0.97010 * 119.99893 * 179.97438 * 14 13 11 30 30 H 1.07998 * 120.82429 * 180.02562 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3501 1.5454 -0.0005 5 8 4.0902 0.5818 -0.0005 6 6 3.9135 2.9075 -0.0011 7 6 3.0716 4.0226 -0.0017 8 7 3.5703 5.2398 -0.0028 9 6 4.8790 5.4592 -0.0038 10 7 5.3529 6.7591 -0.0054 11 6 4.4741 7.8078 -0.0054 12 1 3.4103 7.6209 -0.0045 13 6 4.9499 9.1127 -0.0065 14 7 6.2450 9.3403 -0.0080 15 14 3.7500 10.5444 -0.0071 16 1 2.3590 10.0244 -0.0057 17 1 3.9689 11.3743 1.2047 18 1 3.9681 11.3726 -1.2203 19 6 5.7838 4.3966 -0.0033 20 17 7.4933 4.6989 -0.0041 21 6 5.3039 3.1030 -0.0012 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8901 24 1 -0.3633 0.5138 -0.8899 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 2.0007 3.8837 -0.0059 28 1 6.3083 6.9270 -0.0066 29 1 6.5773 10.2517 -0.0092 30 1 5.9809 2.2616 -0.0003 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155534069.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:31 Heat of formation + Delta-G solvation = -80.932380 kcal Electronic energy + Delta-G solvation = -17606.174049 eV Core-core repulsion = 14426.433370 eV Total energy + Delta-G solvation = -3179.740679 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.48933 -40.51974 -37.60823 -37.39520 -37.17663 -34.20935 -32.94984 -32.56322 -30.69621 -27.29364 -25.10127 -24.35378 -23.44021 -21.94855 -20.14890 -19.05042 -18.77563 -17.76854 -17.38665 -17.03548 -16.35805 -15.79219 -15.56020 -15.54411 -14.84246 -14.73900 -14.14337 -13.74776 -13.57518 -13.44567 -13.28834 -12.89729 -12.79040 -12.70576 -12.40442 -12.24486 -12.07224 -11.95869 -11.58591 -11.39755 -10.90830 -10.47814 -10.20804 -9.03711 -8.76534 -5.96107 -0.11604 0.44814 1.24076 1.41577 1.42870 1.58587 1.73505 1.91642 2.16312 2.74728 2.79382 3.21503 3.81053 4.00752 4.07606 4.11880 4.22111 4.28773 4.45541 4.58919 4.82471 4.99270 5.02714 5.18140 5.21868 5.27215 5.45307 5.58340 5.79933 6.47642 6.84615 6.95731 7.03410 7.55772 8.38167 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.021633 B = 0.004976 C = 0.004057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.985541 B = 5625.619406 C = 6899.157888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.054 3.946 3 O -0.358 6.358 4 C 0.535 3.465 5 O -0.563 6.563 6 C -0.325 4.325 7 C 0.237 3.763 8 N -0.560 5.560 9 C 0.344 3.656 10 N -0.496 5.496 11 C -0.309 4.309 12 H 0.121 0.879 13 C -0.014 4.014 14 N -0.897 5.897 15 Si 1.011 2.989 16 H -0.255 1.255 17 H -0.271 1.271 18 H -0.271 1.271 19 C -0.208 4.208 20 Cl -0.075 7.075 21 C 0.048 3.952 22 H 0.100 0.900 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.187 0.813 28 H 0.410 0.590 29 H 0.289 0.711 30 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.703 -9.453 0.004 12.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.019 4.019 3 O -0.275 6.275 4 C 0.384 3.616 5 O -0.457 6.457 6 C -0.336 4.336 7 C 0.066 3.934 8 N -0.280 5.280 9 C 0.097 3.903 10 N -0.096 5.096 11 C -0.440 4.440 12 H 0.139 0.861 13 C -0.218 4.218 14 N -0.531 5.531 15 Si 0.832 3.168 16 H -0.179 1.179 17 H -0.196 1.196 18 H -0.196 1.196 19 C -0.243 4.243 20 Cl -0.047 7.047 21 C 0.023 3.977 22 H 0.119 0.881 23 H 0.087 0.913 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.203 0.797 28 H 0.248 0.752 29 H 0.099 0.901 30 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -7.702 -8.398 0.002 11.395 hybrid contribution 1.302 -0.126 0.001 1.308 sum -6.400 -8.524 0.004 10.659 Atomic orbital electron populations 1.21818 0.90268 1.04310 1.03753 1.23263 0.97044 0.79261 1.02358 1.86532 1.23002 1.33536 1.84460 1.20645 0.80509 0.88924 0.71521 1.90740 1.61079 1.43355 1.50479 1.19139 0.93227 0.91206 1.29983 1.23056 1.00602 0.85025 0.84741 1.67385 1.10906 1.24767 1.24957 1.18186 0.89130 0.84920 0.98061 1.41366 1.10030 1.02108 1.56085 1.20501 0.92500 0.84470 1.46516 0.86143 1.26559 0.98643 1.01741 0.94864 1.69737 1.14199 1.24491 1.44723 0.84592 0.77963 0.75914 0.78356 1.17867 1.19612 1.19604 1.20632 0.84228 0.94127 1.25319 1.98285 1.12590 1.96012 1.97858 1.20959 0.94369 0.94286 0.88093 0.88099 0.91269 0.91264 0.91545 0.91547 0.79670 0.75244 0.90086 0.83792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 10.29 71.98 0.74 -1.34 16 2 C 0.05 1.18 6.20 71.98 0.45 1.62 16 3 O -0.36 -10.23 9.48 -56.77 -0.54 -10.77 16 4 C 0.53 18.35 7.89 70.24 0.55 18.91 16 5 O -0.56 -21.50 16.20 19.80 0.32 -21.18 16 6 C -0.33 -11.83 5.89 -19.98 -0.12 -11.95 16 7 C 0.24 8.57 10.78 85.10 0.92 9.49 16 8 N -0.56 -24.15 9.04 -192.17 -1.74 -25.88 16 9 C 0.34 15.58 7.43 133.30 0.99 16.57 16 10 N -0.50 -24.22 5.36 -189.17 -1.01 -25.24 16 11 C -0.31 -15.39 9.69 84.07 0.82 -14.58 16 12 H 0.12 5.97 7.06 -2.91 -0.02 5.95 16 13 C -0.01 -0.66 5.50 84.90 0.47 -0.19 16 14 N -0.90 -44.79 13.05 21.66 0.28 -44.51 16 15 Si 1.01 37.48 29.55 68.60 2.03 39.51 16 16 H -0.26 -9.17 7.11 99.48 0.71 -8.46 16 17 H -0.27 -9.79 7.11 99.48 0.71 -9.08 16 18 H -0.27 -9.79 7.11 99.48 0.71 -9.08 16 19 C -0.21 -8.52 6.36 22.53 0.14 -8.38 16 20 Cl -0.08 -2.86 27.59 -2.72 -0.08 -2.93 16 21 C 0.05 1.81 9.50 22.73 0.22 2.03 16 22 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 23 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 24 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 27 H 0.19 5.40 7.61 -2.91 -0.02 5.38 16 28 H 0.41 20.20 6.51 -92.71 -0.60 19.59 16 29 H 0.29 13.33 8.31 -92.70 -0.77 12.56 16 30 H 0.14 5.10 7.73 -2.91 -0.02 5.08 16 Total: -1.00 -56.21 289.05 5.02 -51.18 By element: Atomic # 1 Polarization: 27.04 SS G_CDS: 0.58 Total: 27.62 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: 5.17 Total: 12.19 kcal Atomic # 7 Polarization: -93.16 SS G_CDS: -2.47 Total: -95.63 kcal Atomic # 8 Polarization: -31.73 SS G_CDS: -0.22 Total: -31.95 kcal Atomic # 14 Polarization: 37.48 SS G_CDS: 2.03 Total: 39.51 kcal Atomic # 17 Polarization: -2.86 SS G_CDS: -0.08 Total: -2.93 kcal Total: -56.21 5.02 -51.18 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155534069.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.750 kcal (2) G-P(sol) polarization free energy of solvation -56.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds