Wall clock time and date at job start Mon Mar 30 2020 00:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34764 * 117.00200 * 2 1 4 4 O 1.21519 * 119.99550 * 0.02562 * 3 2 1 5 5 C 1.47404 * 120.00359 * 180.02562 * 3 2 1 6 6 C 1.40413 * 120.47078 * 6.23215 * 5 3 2 7 7 C 1.36953 * 118.47480 * 179.74944 * 6 5 3 8 8 Cl 1.73601 * 120.32220 * 180.28793 * 7 6 5 9 9 C 1.39584 * 119.35457 * 0.51277 * 7 6 5 10 10 N 1.38365 * 119.54805 * 179.74860 * 9 7 6 11 11 C 1.36814 * 120.00301 * 179.73166 * 10 9 7 12 12 H 1.08004 * 119.99778 * 359.97438 * 11 10 9 13 13 C 1.38895 * 120.00196 * 179.97438 * 11 10 9 14 14 N 1.31496 * 119.99971 * 359.72684 * 13 11 10 15 15 Si 1.86800 * 120.00271 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.46859 * 359.97438 * 15 13 11 17 17 H 1.48491 * 109.47497 * 120.00072 * 15 13 11 18 18 H 1.48504 * 109.47297 * 240.00145 * 15 13 11 19 19 N 1.32687 * 120.90707 * 359.47483 * 9 7 6 20 20 C 1.31591 * 121.65661 * 0.27564 * 19 9 7 21 21 C 1.50708 * 119.72664 * 179.97438 * 20 19 9 22 22 H 1.08994 * 109.46831 * 299.99582 * 1 2 3 23 23 H 1.08997 * 109.47041 * 59.99479 * 1 2 3 24 24 H 1.08998 * 109.46759 * 179.97438 * 1 2 3 25 25 H 1.07999 * 120.76413 * 0.02562 * 6 5 3 26 26 H 0.97000 * 119.99683 * 359.73342 * 10 9 7 27 27 H 0.97003 * 120.00135 * 180.02562 * 14 13 11 28 28 H 1.08999 * 109.46675 * 96.58590 * 21 20 19 29 29 H 1.08992 * 109.47288 * 216.59200 * 21 20 19 30 30 H 1.08997 * 109.46925 * 336.58875 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2007 0.0000 4 8 1.4020 2.2198 0.0005 5 6 3.5359 1.2779 -0.0006 6 6 4.3099 0.1138 -0.1325 7 6 5.6742 0.2334 -0.1331 8 17 6.6772 -1.1735 -0.3007 9 6 6.2504 1.4970 0.0072 10 7 7.6284 1.6219 0.0124 11 6 8.2029 2.8565 0.1438 12 1 7.5809 3.7338 0.2431 13 6 9.5862 2.9818 0.1496 14 7 10.3436 1.9131 0.0341 15 14 10.3708 4.6674 0.3297 16 1 9.3080 5.6979 0.4481 17 1 11.2209 4.6903 1.5470 18 1 11.2070 4.9543 -0.8634 19 7 5.4947 2.5808 0.1303 20 6 4.1807 2.5101 0.1306 21 6 3.3647 3.7691 0.2738 22 1 -0.3633 0.5137 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 3.8401 -0.8531 -0.2357 26 1 8.1870 0.8340 -0.0771 27 1 11.3097 2.0004 0.0385 28 1 3.0627 4.1203 -0.7129 29 1 2.4781 3.5613 0.8727 30 1 3.9633 4.5361 0.7650 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155537418.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:12 Heat of formation + Delta-G solvation = -74.269903 kcal Electronic energy + Delta-G solvation = -18019.472155 eV Core-core repulsion = 14840.020382 eV Total energy + Delta-G solvation = -3179.451773 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.62506 -40.49868 -37.77131 -37.33299 -37.04874 -34.30195 -33.55598 -31.70665 -29.16174 -28.06027 -26.87744 -24.13746 -23.26868 -22.07928 -20.03416 -18.72031 -18.54472 -17.92020 -17.23004 -17.03239 -16.36458 -15.67895 -15.63292 -15.56484 -14.65095 -14.34705 -14.22032 -13.78642 -13.65715 -13.56098 -13.26398 -13.01146 -12.80408 -12.68987 -12.62253 -12.09255 -12.01047 -11.91423 -11.60439 -11.13120 -10.89564 -10.36839 -10.22810 -9.00153 -8.76065 -5.96422 -0.10019 0.46393 1.29389 1.40363 1.41215 1.56577 1.74915 1.98355 2.16049 2.71537 2.78372 3.17642 3.77053 3.89318 4.11784 4.25961 4.44748 4.46323 4.61916 4.77563 4.85343 4.88584 4.99978 5.12557 5.22950 5.23750 5.43741 5.61481 5.85179 6.49113 6.88344 6.99105 7.03893 7.58081 8.38790 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.024715 B = 0.005587 C = 0.004574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.642050 B = 5010.264177 C = 6120.416479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.367 6.367 3 C 0.530 3.470 4 O -0.541 6.541 5 C -0.326 4.326 6 C 0.046 3.954 7 C -0.208 4.208 8 Cl -0.074 7.074 9 C 0.347 3.653 10 N -0.498 5.498 11 C -0.310 4.310 12 H 0.116 0.884 13 C -0.013 4.013 14 N -0.897 5.897 15 Si 1.008 2.992 16 H -0.259 1.259 17 H -0.270 1.270 18 H -0.270 1.270 19 N -0.564 5.564 20 C 0.252 3.748 21 C -0.097 4.097 22 H 0.061 0.939 23 H 0.061 0.939 24 H 0.129 0.871 25 H 0.161 0.839 26 H 0.410 0.590 27 H 0.289 0.711 28 H 0.085 0.915 29 H 0.098 0.902 30 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.968 -3.031 0.037 11.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.284 6.284 3 C 0.379 3.621 4 O -0.435 6.435 5 C -0.337 4.337 6 C 0.022 3.978 7 C -0.243 4.243 8 Cl -0.046 7.046 9 C 0.100 3.900 10 N -0.099 5.099 11 C -0.441 4.441 12 H 0.134 0.866 13 C -0.217 4.217 14 N -0.532 5.532 15 Si 0.830 3.170 16 H -0.182 1.182 17 H -0.195 1.195 18 H -0.195 1.195 19 N -0.286 5.286 20 C 0.101 3.899 21 C -0.154 4.154 22 H 0.080 0.920 23 H 0.080 0.920 24 H 0.147 0.853 25 H 0.178 0.822 26 H 0.249 0.751 27 H 0.099 0.901 28 H 0.103 0.897 29 H 0.116 0.884 30 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.069 -2.040 0.114 10.275 hybrid contribution 0.503 -0.813 -0.137 0.966 sum -9.566 -2.853 -0.023 9.983 Atomic orbital electron populations 1.23489 0.74814 1.05371 1.02452 1.86534 1.24863 1.32314 1.84682 1.20591 0.88174 0.81284 0.72038 1.90706 1.67156 1.35945 1.49657 1.19022 0.89962 0.94531 1.30144 1.21020 0.89899 0.99065 0.87843 1.20514 0.92576 0.86695 1.24537 1.98285 1.69547 1.39739 1.97042 1.18233 0.85751 0.88512 0.97517 1.41319 1.01889 1.10601 1.56082 1.20418 0.91200 0.86435 1.46041 0.86638 1.26501 0.96207 1.03910 0.95056 1.69727 1.07301 1.31309 1.44850 0.84625 0.78147 0.75825 0.78425 1.18227 1.19479 1.19486 1.67305 1.05761 1.28977 1.26540 1.21435 0.88433 0.94813 0.85198 1.20958 0.98479 0.92174 1.03745 0.92001 0.92042 0.85272 0.82160 0.75147 0.90117 0.89676 0.88381 0.91180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 10.57 113.37 1.20 1.81 16 2 O -0.37 -10.26 9.90 -56.75 -0.56 -10.82 16 3 C 0.53 17.70 7.82 70.24 0.55 18.25 16 4 O -0.54 -18.93 13.15 19.78 0.26 -18.67 16 5 C -0.33 -12.09 5.89 -19.98 -0.12 -12.21 16 6 C 0.05 1.66 9.46 22.50 0.21 1.88 16 7 C -0.21 -8.41 6.32 22.29 0.14 -8.27 16 8 Cl -0.07 -2.71 27.58 -2.72 -0.08 -2.78 16 9 C 0.35 16.09 7.42 133.30 0.99 17.08 16 10 N -0.50 -24.74 5.35 -189.16 -1.01 -25.75 16 11 C -0.31 -15.84 9.69 84.07 0.81 -15.03 16 12 H 0.12 5.96 7.06 -2.91 -0.02 5.94 16 13 C -0.01 -0.62 5.50 84.90 0.47 -0.15 16 14 N -0.90 -45.26 13.05 21.66 0.28 -44.98 16 15 Si 1.01 38.45 29.55 68.60 2.03 40.48 16 16 H -0.26 -9.68 7.11 99.48 0.71 -8.98 16 17 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 18 H -0.27 -9.97 7.11 99.48 0.71 -9.26 16 19 N -0.56 -25.76 8.97 -180.25 -1.62 -27.38 16 20 C 0.25 10.07 6.82 42.95 0.29 10.36 16 21 C -0.10 -3.25 8.87 71.24 0.63 -2.62 16 22 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 23 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.16 4.81 7.71 -2.91 -0.02 4.79 16 26 H 0.41 20.38 6.51 -92.71 -0.60 19.77 16 27 H 0.29 13.44 8.31 -92.71 -0.77 12.67 16 28 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 29 H 0.10 3.22 5.85 -2.39 -0.01 3.20 16 30 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -56.25 283.37 5.08 -51.18 By element: Atomic # 1 Polarization: 27.04 SS G_CDS: 0.59 Total: 27.63 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: 5.18 Total: 11.10 kcal Atomic # 7 Polarization: -95.76 SS G_CDS: -2.35 Total: -98.10 kcal Atomic # 8 Polarization: -29.19 SS G_CDS: -0.30 Total: -29.49 kcal Atomic # 14 Polarization: 38.45 SS G_CDS: 2.03 Total: 40.48 kcal Atomic # 17 Polarization: -2.71 SS G_CDS: -0.08 Total: -2.78 kcal Total: -56.25 5.08 -51.18 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155537418.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.095 kcal (2) G-P(sol) polarization free energy of solvation -56.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds