Wall clock time and date at job start Mon Mar 30 2020 01:08:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45205 * 1
3 3 C 1.34219 * 116.99784 * 2 1
4 4 O 1.20829 * 120.00301 * 0.02562 * 3 2 1
5 5 C 1.50701 * 119.99881 * 180.02562 * 3 2 1
6 6 N 1.46500 * 109.47347 * 180.02562 * 5 3 2
7 7 C 1.38410 * 120.00211 * 179.97438 * 6 5 3
8 8 N 1.32744 * 119.43638 * 0.02562 * 7 6 5
9 9 C 1.31475 * 121.74005 * 179.97438 * 8 7 6
10 10 C 1.40789 * 120.38630 * 0.02562 * 9 8 7
11 11 C 1.41197 * 120.56055 * 180.02562 * 10 9 8
12 12 H 1.07997 * 120.00401 * 335.70652 * 11 10 9
13 13 C 1.39872 * 119.99897 * 155.70829 * 11 10 9
14 14 N 1.30911 * 119.99775 * 343.24928 * 13 11 10
15 15 Si 1.86799 * 120.00203 * 163.25102 * 13 11 10
16 16 H 1.48503 * 109.46859 * 59.99957 * 15 13 11
17 17 H 1.48496 * 109.47290 * 179.97438 * 15 13 11
18 18 H 1.48503 * 109.46896 * 300.00282 * 15 13 11
19 19 C 1.41281 * 118.87485 * 359.97438 * 10 9 8
20 20 C 1.36669 * 118.39651 * 359.97438 * 19 10 9
21 21 Cl 1.73608 * 120.26053 * 179.97438 * 20 19 10
22 22 H 1.08993 * 109.46772 * 299.99704 * 1 2 3
23 23 H 1.08999 * 109.47236 * 59.99802 * 1 2 3
24 24 H 1.08999 * 109.46727 * 179.97438 * 1 2 3
25 25 H 1.08999 * 109.47421 * 60.00468 * 5 3 2
26 26 H 1.09000 * 109.47131 * 299.99839 * 5 3 2
27 27 H 0.97006 * 119.99720 * 0.02562 * 6 5 3
28 28 H 1.07993 * 119.80216 * 180.27948 * 9 8 7
29 29 H 0.97002 * 119.99496 * 180.02562 * 14 13 11
30 30 H 1.07996 * 120.80112 * 179.97438 * 19 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0613 1.1959 0.0000
4 8 1.4033 2.2093 0.0005
5 6 3.5663 1.2748 -0.0006
6 7 3.9817 2.6797 0.0002
7 6 5.3274 3.0035 0.0003
8 7 6.2321 2.0321 -0.0007
9 6 7.5217 2.2881 -0.0011
10 6 7.9838 3.6180 0.0001
11 6 9.3679 3.8971 -0.0008
12 1 10.0662 3.1677 0.3824
13 6 9.8348 5.1182 -0.4981
14 7 9.0599 5.8577 -1.2507
15 14 11.5639 5.6940 -0.0882
16 1 12.5480 4.7020 -0.5910
17 1 11.8136 7.0085 -0.7322
18 1 11.7048 5.8285 1.3840
19 6 7.0391 4.6685 0.0012
20 6 5.7106 4.3479 0.0005
21 17 4.5083 5.6003 0.0024
22 1 -0.3632 0.5138 0.8900
23 1 -0.3634 0.5139 -0.8900
24 1 -0.3633 -1.0277 -0.0005
25 1 3.9557 0.7810 -0.8908
26 1 3.9564 0.7806 0.8892
27 1 3.3136 3.3830 0.0013
28 1 8.2306 1.4734 -0.0065
29 1 9.3838 6.7044 -1.5958
30 1 7.3591 5.7000 0.0026
RHF calculation, no. of doubly occupied orbitals= 46
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001156345350.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:08:40
Heat of formation + Delta-G solvation = -61.350915 kcal
Electronic energy + Delta-G solvation = -17654.848128 eV
Core-core repulsion = 14475.956565 eV
Total energy + Delta-G solvation = -3178.891563 eV
No. of doubly occupied orbitals = 46
Molecular weight
(most abundant/longest-lived isotopes) = 270.056 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-40.48519 -38.75949 -36.70056 -35.58247 -35.05082 -33.54245 -30.57077 -30.04178
-28.41212 -26.60553 -24.59446 -22.18652 -21.30494 -20.59246 -17.99477 -17.49679
-17.03862 -16.63024 -15.97066 -15.53434 -14.96149 -14.31704 -14.28178 -13.83285
-13.24438 -13.11877 -12.96776 -12.37542 -12.14829 -12.12524 -11.81427 -11.44974
-11.23455 -10.99485 -10.91688 -10.77338 -10.54128 -10.39754 -9.88853 -9.58279
-8.95416 -8.38014 -8.19255 -6.99872 -6.76641 -4.37005 2.17058 2.46164
2.56370 2.76287 3.03374 3.05038 3.14455 3.18357 3.86114 4.12344
4.51508 4.78164 4.96362 5.03354 5.36457 5.45552 5.67308 5.69941
5.83397 6.25503 6.27638 6.57783 6.86677 7.00428 7.09485 7.55800
7.63761 7.68471 7.98895 8.28752 8.32252 8.61620 8.67239 9.43293
10.08241
Molecular weight = 270.06amu
Principal moments of inertia in cm(-1)
A = 0.037819 B = 0.004370 C = 0.003968
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 740.191720 B = 6405.403291 C = 7055.562111
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.036 3.964
2 O -0.358 6.358
3 C 0.456 3.544
4 O -0.507 6.507
5 C 0.157 3.843
6 N -0.736 5.736
7 C 0.286 3.714
8 N -0.503 5.503
9 C 0.014 3.986
10 C 0.041 3.959
11 C -0.451 4.451
12 H 0.084 0.916
13 C 0.073 3.927
14 N -0.796 5.796
15 Si 0.913 3.087
16 H -0.265 1.265
17 H -0.278 1.278
18 H -0.263 1.263
19 C -0.089 4.089
20 C -0.097 4.097
21 Cl -0.110 7.110
22 H 0.062 0.938
23 H 0.062 0.938
24 H 0.101 0.899
25 H 0.098 0.902
26 H 0.098 0.902
27 H 0.409 0.591
28 H 0.137 0.863
29 H 0.284 0.716
30 H 0.141 0.859
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.606 -5.934 1.695 10.590
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.058 4.058
2 O -0.274 6.274
3 C 0.300 3.700
4 O -0.394 6.394
5 C 0.031 3.969
6 N -0.382 5.382
7 C 0.053 3.947
8 N -0.218 5.218
9 C -0.145 4.145
10 C 0.036 3.964
11 C -0.482 4.482
12 H 0.102 0.898
13 C -0.145 4.145
14 N -0.422 5.422
15 Si 0.737 3.263
16 H -0.189 1.189
17 H -0.203 1.203
18 H -0.188 1.188
19 C -0.115 4.115
20 C -0.129 4.129
21 Cl -0.082 7.082
22 H 0.081 0.919
23 H 0.081 0.919
24 H 0.119 0.881
25 H 0.116 0.884
26 H 0.115 0.885
27 H 0.248 0.752
28 H 0.154 0.846
29 H 0.095 0.905
30 H 0.159 0.841
Dipole moment (debyes) X Y Z Total
from point charges -9.202 -6.352 1.546 11.288
hybrid contribution 0.465 1.665 0.022 1.729
sum -8.738 -4.687 1.567 10.038
Atomic orbital electron populations
1.23254 0.76418 1.03579 1.02561 1.86503 1.23357 1.33276 1.84231
1.24129 0.92651 0.81352 0.71916 1.90648 1.66999 1.36363 1.45395
1.20261 0.84332 0.87286 1.05014 1.43515 1.03735 1.04376 1.86557
1.17249 0.84450 0.87071 1.05917 1.66737 1.03114 1.33888 1.18085
1.22341 0.89275 0.95464 1.07401 1.18311 0.94309 0.90841 0.92980
1.19329 0.91899 1.01000 1.35926 0.89825 1.25926 1.00056 0.96029
0.92505 1.69786 1.37879 1.11714 1.22772 0.86284 0.81667 0.78407
0.79940 1.18914 1.20335 1.18775 1.21321 0.88513 1.01577 1.00132
1.20879 0.90468 0.86460 1.15077 1.98257 1.58007 1.54272 1.97677
0.91918 0.91915 0.88099 0.88443 0.88460 0.75203 0.84591 0.90500
0.84120
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.32 10.56 101.05 1.07 1.39 16
2 O -0.36 -4.44 10.57 -39.23 -0.41 -4.86 16
3 C 0.46 6.75 8.03 36.01 0.29 7.04 16
4 O -0.51 -8.68 15.42 -18.75 -0.29 -8.97 16
5 C 0.16 2.48 6.25 -5.19 -0.03 2.44 16
6 N -0.74 -14.17 5.61 -61.50 -0.35 -14.51 16
7 C 0.29 6.38 7.48 -155.05 -1.16 5.22 16
8 N -0.50 -11.36 9.52 -11.75 -0.11 -11.47 16
9 C 0.01 0.33 10.97 -16.74 -0.18 0.14 16
10 C 0.04 1.03 5.59 -106.65 -0.60 0.43 16
11 C -0.45 -11.11 9.07 -37.85 -0.34 -11.46 16
12 H 0.08 1.94 7.90 -52.49 -0.41 1.52 16
13 C 0.07 1.72 5.18 -17.33 -0.09 1.63 16
14 N -0.80 -19.66 10.91 55.54 0.61 -19.05 16
15 Si 0.91 17.77 29.59 -169.99 -5.03 12.74 16
16 H -0.26 -5.08 7.11 56.52 0.40 -4.67 16
17 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16
18 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16
19 C -0.09 -2.20 8.52 -38.99 -0.33 -2.53 16
20 C -0.10 -2.24 6.32 -39.57 -0.25 -2.49 16
21 Cl -0.11 -2.24 27.56 -51.86 -1.43 -3.67 16
22 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16
23 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16
24 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16
25 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16
26 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16
27 H 0.41 7.92 6.05 -40.82 -0.25 7.67 16
28 H 0.14 2.86 8.06 -52.49 -0.42 2.44 16
29 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16
30 H 0.14 3.63 6.20 -52.49 -0.33 3.30 16
LS Contribution 285.65 15.07 4.30 4.30
Total: -1.00 -27.40 285.65 -7.00 -34.40
By element:
Atomic # 1 Polarization: 11.93 SS G_CDS: -2.66 Total: 9.27 kcal
Atomic # 6 Polarization: 3.46 SS G_CDS: -1.63 Total: 1.82 kcal
Atomic # 7 Polarization: -45.18 SS G_CDS: 0.15 Total: -45.03 kcal
Atomic # 8 Polarization: -13.13 SS G_CDS: -0.70 Total: -13.83 kcal
Atomic # 14 Polarization: 17.77 SS G_CDS: -5.03 Total: 12.74 kcal
Atomic # 17 Polarization: -2.24 SS G_CDS: -1.43 Total: -3.67 kcal
Total LS contribution 4.30 Total: 4.30 kcal
Total: -27.40 -7.00 -34.40 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001156345350.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -26.955 kcal
(2) G-P(sol) polarization free energy of solvation -27.398 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.353 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.998 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.396 kcal
(6) G-S(sol) free energy of system = (1) + (5) -61.351 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds