Wall clock time and date at job start Mon Mar 30 2020 01:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34219 * 116.99784 * 2 1 4 4 O 1.20829 * 120.00301 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99881 * 180.02562 * 3 2 1 6 6 N 1.46500 * 109.47347 * 180.02562 * 5 3 2 7 7 C 1.38410 * 120.00211 * 179.97438 * 6 5 3 8 8 N 1.32744 * 119.43638 * 0.02562 * 7 6 5 9 9 C 1.31475 * 121.74005 * 179.97438 * 8 7 6 10 10 C 1.40789 * 120.38630 * 0.02562 * 9 8 7 11 11 C 1.41197 * 120.56055 * 180.02562 * 10 9 8 12 12 H 1.07997 * 120.00401 * 335.70652 * 11 10 9 13 13 C 1.39872 * 119.99897 * 155.70829 * 11 10 9 14 14 N 1.30911 * 119.99775 * 343.24928 * 13 11 10 15 15 Si 1.86799 * 120.00203 * 163.25102 * 13 11 10 16 16 H 1.48503 * 109.46859 * 59.99957 * 15 13 11 17 17 H 1.48496 * 109.47290 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.46896 * 300.00282 * 15 13 11 19 19 C 1.41281 * 118.87485 * 359.97438 * 10 9 8 20 20 C 1.36669 * 118.39651 * 359.97438 * 19 10 9 21 21 Cl 1.73608 * 120.26053 * 179.97438 * 20 19 10 22 22 H 1.08993 * 109.46772 * 299.99704 * 1 2 3 23 23 H 1.08999 * 109.47236 * 59.99802 * 1 2 3 24 24 H 1.08999 * 109.46727 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47421 * 60.00468 * 5 3 2 26 26 H 1.09000 * 109.47131 * 299.99839 * 5 3 2 27 27 H 0.97006 * 119.99720 * 0.02562 * 6 5 3 28 28 H 1.07993 * 119.80216 * 180.27948 * 9 8 7 29 29 H 0.97002 * 119.99496 * 180.02562 * 14 13 11 30 30 H 1.07996 * 120.80112 * 179.97438 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9817 2.6797 0.0002 7 6 5.3274 3.0035 0.0003 8 7 6.2321 2.0321 -0.0007 9 6 7.5217 2.2881 -0.0011 10 6 7.9838 3.6180 0.0001 11 6 9.3679 3.8971 -0.0008 12 1 10.0662 3.1677 0.3824 13 6 9.8348 5.1182 -0.4981 14 7 9.0599 5.8577 -1.2507 15 14 11.5639 5.6940 -0.0882 16 1 12.5480 4.7020 -0.5910 17 1 11.8136 7.0085 -0.7322 18 1 11.7048 5.8285 1.3840 19 6 7.0391 4.6685 0.0012 20 6 5.7106 4.3479 0.0005 21 17 4.5083 5.6003 0.0024 22 1 -0.3632 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 3.9557 0.7810 -0.8908 26 1 3.9564 0.7806 0.8892 27 1 3.3136 3.3830 0.0013 28 1 8.2306 1.4734 -0.0065 29 1 9.3838 6.7044 -1.5958 30 1 7.3591 5.7000 0.0026 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156345350.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:40 Heat of formation + Delta-G solvation = -76.751022 kcal Electronic energy + Delta-G solvation = -17655.515927 eV Core-core repulsion = 14475.956565 eV Total energy + Delta-G solvation = -3179.559362 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.63829 -40.50029 -37.85602 -37.30092 -36.65439 -35.22702 -32.38385 -31.64087 -29.68170 -27.82292 -26.26082 -23.86914 -22.98987 -21.91346 -19.37803 -19.26020 -18.28391 -17.71452 -17.60994 -17.00424 -16.62175 -15.98799 -15.60823 -15.24882 -14.74630 -14.61402 -14.18436 -13.87716 -13.71700 -13.60019 -13.17804 -12.96965 -12.85311 -12.69348 -12.43329 -12.03423 -11.86270 -11.72950 -11.61709 -11.28349 -10.63824 -10.18924 -10.00816 -8.75254 -8.50409 -6.20578 0.64250 0.97145 1.01076 1.40626 1.45033 1.48104 1.55017 1.58357 2.24419 2.61138 2.73931 3.63437 3.71807 4.09497 4.29927 4.31472 4.40123 4.42544 4.56268 4.70241 4.75718 5.05934 5.20362 5.22279 5.29513 5.77864 5.78710 6.24283 6.49127 6.57834 6.65729 6.80573 6.86596 7.63676 8.34049 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.037819 B = 0.004370 C = 0.003968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.191720 B = 6405.403291 C = 7055.562111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.355 6.355 3 C 0.467 3.533 4 O -0.533 6.533 5 C 0.154 3.846 6 N -0.734 5.734 7 C 0.289 3.711 8 N -0.502 5.502 9 C 0.013 3.987 10 C 0.014 3.986 11 C -0.479 4.479 12 H 0.091 0.909 13 C 0.034 3.966 14 N -0.829 5.829 15 Si 0.983 3.017 16 H -0.257 1.257 17 H -0.274 1.274 18 H -0.261 1.261 19 C -0.105 4.105 20 C -0.111 4.111 21 Cl -0.090 7.090 22 H 0.063 0.937 23 H 0.062 0.938 24 H 0.137 0.863 25 H 0.107 0.893 26 H 0.109 0.891 27 H 0.408 0.592 28 H 0.156 0.844 29 H 0.289 0.711 30 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.875 -6.951 1.927 11.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.270 6.270 3 C 0.311 3.689 4 O -0.423 6.423 5 C 0.029 3.971 6 N -0.378 5.378 7 C 0.055 3.945 8 N -0.218 5.218 9 C -0.146 4.146 10 C 0.008 3.992 11 C -0.509 4.509 12 H 0.109 0.891 13 C -0.181 4.181 14 N -0.455 5.455 15 Si 0.805 3.195 16 H -0.181 1.181 17 H -0.199 1.199 18 H -0.185 1.185 19 C -0.132 4.132 20 C -0.144 4.144 21 Cl -0.062 7.062 22 H 0.082 0.918 23 H 0.081 0.919 24 H 0.155 0.845 25 H 0.124 0.876 26 H 0.127 0.873 27 H 0.247 0.753 28 H 0.173 0.827 29 H 0.099 0.901 30 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -9.513 -7.410 1.778 12.189 hybrid contribution 0.352 1.895 -0.058 1.929 sum -9.161 -5.515 1.720 10.830 Atomic orbital electron populations 1.23624 0.74198 1.06039 1.02663 1.86486 1.25395 1.31617 1.83506 1.23802 0.92118 0.81667 0.71300 1.90644 1.67429 1.37374 1.46872 1.20387 0.85514 0.85259 1.05955 1.43570 1.02474 1.06115 1.85689 1.17466 0.85616 0.86856 1.04542 1.66819 1.02882 1.33728 1.18364 1.22663 0.89932 0.95493 1.06471 1.18610 0.94906 0.91641 0.93997 1.19624 0.92113 1.02199 1.37000 0.89106 1.26746 1.03931 0.95664 0.91762 1.69853 1.39811 1.12227 1.23659 0.85212 0.76770 0.77996 0.79562 1.18108 1.19892 1.18538 1.21252 0.89460 1.00981 1.01505 1.20986 0.90602 0.87666 1.15113 1.98250 1.56889 1.53428 1.97591 0.91817 0.91893 0.84496 0.87560 0.87322 0.75302 0.82691 0.90062 0.85679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.56 113.37 1.20 1.63 16 2 O -0.35 -8.00 10.57 -51.31 -0.54 -8.54 16 3 C 0.47 13.05 8.03 71.24 0.57 13.62 16 4 O -0.53 -17.64 15.42 21.95 0.34 -17.30 16 5 C 0.15 4.60 6.25 85.63 0.54 5.14 16 6 N -0.73 -27.49 5.61 -348.48 -1.96 -29.45 16 7 C 0.29 12.72 7.48 133.32 1.00 13.72 16 8 N -0.50 -22.27 9.52 -191.09 -1.82 -24.09 16 9 C 0.01 0.61 10.97 85.37 0.94 1.55 16 10 C 0.01 0.71 5.59 -21.18 -0.12 0.59 16 11 C -0.48 -23.78 9.07 23.39 0.21 -23.57 16 12 H 0.09 4.20 7.90 -2.91 -0.02 4.18 16 13 C 0.03 1.60 5.18 85.23 0.44 2.04 16 14 N -0.83 -41.57 10.91 21.82 0.24 -41.33 16 15 Si 0.98 36.17 29.59 68.60 2.03 38.20 16 16 H -0.26 -9.07 7.11 99.48 0.71 -8.36 16 17 H -0.27 -9.78 7.11 99.48 0.71 -9.08 16 18 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 19 C -0.10 -5.32 8.52 22.65 0.19 -5.12 16 20 C -0.11 -5.17 6.32 22.28 0.14 -5.03 16 21 Cl -0.09 -3.63 27.56 -2.72 -0.07 -3.71 16 22 H 0.06 1.00 8.13 -2.39 -0.02 0.98 16 23 H 0.06 1.00 8.13 -2.39 -0.02 0.98 16 24 H 0.14 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.11 3.04 8.14 -2.39 -0.02 3.02 16 26 H 0.11 3.04 8.14 -2.39 -0.02 3.02 16 27 H 0.41 15.44 6.05 -92.70 -0.56 14.88 16 28 H 0.16 6.39 8.06 -2.91 -0.02 6.37 16 29 H 0.29 13.27 8.30 -92.71 -0.77 12.50 16 30 H 0.13 6.66 6.20 -2.91 -0.02 6.64 16 Total: -1.00 -58.05 285.65 3.95 -54.10 By element: Atomic # 1 Polarization: 26.92 SS G_CDS: 0.63 Total: 27.55 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: 5.11 Total: 4.57 kcal Atomic # 7 Polarization: -91.33 SS G_CDS: -3.54 Total: -94.87 kcal Atomic # 8 Polarization: -25.64 SS G_CDS: -0.20 Total: -25.84 kcal Atomic # 14 Polarization: 36.17 SS G_CDS: 2.03 Total: 38.20 kcal Atomic # 17 Polarization: -3.63 SS G_CDS: -0.07 Total: -3.71 kcal Total: -58.05 3.95 -54.10 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156345350.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.655 kcal (2) G-P(sol) polarization free energy of solvation -58.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds