Wall clock time and date at job start Mon Mar 30 2020 00:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86798 * 120.00278 * 2 1 4 4 H 1.48495 * 109.47164 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47097 * 300.00283 * 3 2 1 6 6 H 1.48498 * 109.47025 * 59.99894 * 3 2 1 7 7 C 1.38805 * 119.99750 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99957 * 180.02562 * 7 2 1 9 9 S 1.76202 * 119.99851 * 359.97438 * 7 2 1 10 10 C 1.81002 * 99.99465 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.46860 * 180.02562 * 10 9 7 12 12 O 1.21293 * 120.00304 * 0.02562 * 11 10 9 13 13 N 1.34780 * 120.00479 * 179.97438 * 11 10 9 14 14 C 1.39773 * 120.00304 * 180.02562 * 13 11 10 15 15 N 1.30920 * 126.07578 * 359.95713 * 14 13 11 16 16 N 1.39920 * 108.86121 * 179.80421 * 15 14 13 17 17 H 0.96996 * 125.68216 * 180.25095 * 16 15 14 18 18 C 1.34182 * 108.64710 * 0.39650 * 16 15 14 19 19 C 1.38104 * 107.53808 * 359.61431 * 18 16 15 20 20 C 1.47241 * 126.44936 * 180.22427 * 19 18 16 21 21 N 1.34773 * 119.99990 * 0.02562 * 20 19 18 22 22 O 1.21624 * 119.99730 * 180.02562 * 20 19 18 23 23 H 0.97000 * 119.99649 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.47219 * 60.00304 * 10 9 7 25 25 H 1.09000 * 109.47529 * 299.99462 * 10 9 7 26 26 H 0.97002 * 119.99232 * 0.02562 * 13 11 10 27 27 H 1.08002 * 126.23470 * 179.88472 * 18 16 15 28 28 H 0.97001 * 120.00050 * 0.02562 * 21 20 19 29 29 H 0.97000 * 120.00215 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7104 1.3463 0.0006 5 1 1.8917 2.3964 -1.2124 6 1 1.8917 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 16 1.1292 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9873 -5.3027 -0.0012 12 8 0.7909 -5.5024 -0.0021 13 7 2.8440 -6.3432 -0.0018 14 6 2.3538 -7.6522 -0.0029 15 7 1.0924 -8.0030 -0.0027 16 7 1.0115 -9.3999 -0.0086 17 1 0.1922 -9.9191 -0.0132 18 6 2.2559 -9.9018 -0.0038 19 6 3.1344 -8.8362 -0.0036 20 6 4.6047 -8.9147 -0.0037 21 7 5.2154 -10.1161 -0.0044 22 8 5.2681 -7.8952 -0.0030 23 1 -0.4850 0.8401 -0.0004 24 1 3.1244 -3.7314 0.8895 25 1 3.1244 -3.7315 -0.8905 26 1 3.8008 -6.1836 -0.0015 27 1 2.5221 -10.9485 -0.0047 28 1 4.6863 -10.9291 -0.0053 29 1 6.1840 -10.1678 -0.0041 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001159476182.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:52 Heat of formation + Delta-G solvation = 3.836802 kcal Electronic energy + Delta-G solvation = -17397.666243 eV Core-core repulsion = 14255.937888 eV Total energy + Delta-G solvation = -3141.728354 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.057 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.65522 -39.08270 -38.97903 -34.69744 -33.86878 -32.38974 -31.10312 -30.32405 -28.80927 -25.46004 -23.72431 -22.62496 -20.51305 -19.65766 -18.97545 -17.72975 -16.88820 -16.60169 -16.32726 -16.08824 -15.68928 -14.77268 -14.76601 -14.30477 -14.12259 -14.01118 -13.39123 -13.21737 -12.54017 -12.22750 -11.04560 -11.02470 -10.96243 -10.96131 -10.72482 -10.27463 -9.95497 -9.78266 -9.42226 -9.15292 -9.03552 -8.50095 -8.20880 -6.46690 -6.18150 -3.88545 1.22071 2.03681 2.34625 3.00699 3.04758 3.25436 3.28867 3.34340 3.42183 3.46972 3.68080 4.23502 4.30654 4.52122 5.02237 5.03842 5.17241 5.19270 5.56934 5.77105 5.91729 6.18639 6.50968 6.74236 6.84371 7.05543 7.16096 7.64621 7.85698 8.08464 8.39894 8.53275 9.27434 10.89384 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.036985 B = 0.003869 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.891604 B = 7234.390312 C = 7976.137280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.072 3.928 3 Si 0.920 3.080 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.075 0.925 9 S -0.057 6.057 10 C -0.151 4.151 11 C 0.523 3.477 12 O -0.468 6.468 13 N -0.637 5.637 14 C 0.362 3.638 15 N -0.277 5.277 16 N -0.452 5.452 17 H 0.447 0.553 18 C 0.119 3.881 19 C -0.319 4.319 20 C 0.602 3.398 21 N -0.854 5.854 22 O -0.550 6.550 23 H 0.268 0.732 24 H 0.096 0.904 25 H 0.096 0.904 26 H 0.429 0.571 27 H 0.187 0.813 28 H 0.397 0.603 29 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.406 -24.652 -0.021 26.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.137 4.137 3 Si 0.746 3.254 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.682 4.682 8 H 0.093 0.907 9 S 0.170 5.830 10 C -0.301 4.301 11 C 0.308 3.692 12 O -0.336 6.336 13 N -0.292 5.292 14 C 0.102 3.898 15 N -0.108 5.108 16 N -0.156 5.156 17 H 0.292 0.708 18 C -0.036 4.036 19 C -0.337 4.337 20 C 0.390 3.610 21 N -0.417 5.417 22 O -0.428 6.428 23 H 0.077 0.923 24 H 0.114 0.886 25 H 0.114 0.886 26 H 0.270 0.730 27 H 0.204 0.796 28 H 0.225 0.775 29 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 5.321 -23.548 -0.020 24.142 hybrid contribution 2.973 0.152 0.001 2.977 sum 8.294 -23.396 -0.019 24.823 Atomic orbital electron populations 1.70035 1.05953 1.27329 1.47035 1.25005 0.95044 0.99065 0.94554 0.86093 0.79637 0.81792 0.77844 1.19549 1.20590 1.20598 1.22920 0.95047 0.91490 1.58738 0.90688 1.85402 1.04563 0.96319 1.96752 1.23525 1.06907 0.94043 1.05645 1.20723 0.86659 0.86218 0.75557 1.90792 1.14691 1.84660 1.43428 1.43450 1.12086 1.00595 1.73033 1.19231 0.90007 0.85806 0.94732 1.78134 1.15532 0.87411 1.29699 1.46135 1.07356 1.05947 1.56210 0.70775 1.22992 0.85171 0.99061 0.96424 1.19896 0.93725 0.91658 1.28446 1.17147 0.85935 0.83434 0.74531 1.43597 1.11207 1.07790 1.79131 1.90779 1.66226 1.34652 1.51184 0.92259 0.88572 0.88576 0.72985 0.79622 0.77484 0.76483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.58 13.22 55.49 0.73 -25.84 15 2 C 0.07 2.10 5.49 -17.43 -0.10 2.01 15 3 Si 0.92 21.83 29.55 -169.99 -5.02 16.81 15 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 15 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 7 C -0.53 -15.51 9.50 30.94 0.29 -15.22 15 8 H 0.07 2.07 7.80 -52.49 -0.41 1.66 15 9 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 15 10 C -0.15 -3.23 6.16 36.01 0.22 -3.01 15 11 C 0.52 10.85 7.81 -10.98 -0.09 10.77 15 12 O -0.47 -11.36 14.58 5.55 0.08 -11.28 15 13 N -0.64 -10.93 5.42 -10.93 -0.06 -10.99 15 14 C 0.36 5.74 7.78 -154.47 -1.20 4.54 15 15 N -0.28 -4.46 10.86 31.61 0.34 -4.12 15 16 N -0.45 -4.15 7.27 30.85 0.22 -3.93 15 17 H 0.45 2.38 8.96 -182.74 -1.64 0.74 15 18 C 0.12 0.80 11.51 -16.57 -0.19 0.61 15 19 C -0.32 -3.59 6.14 -104.92 -0.64 -4.23 15 20 C 0.60 6.47 8.08 -12.60 -0.10 6.37 15 21 N -0.85 -4.54 8.86 30.39 0.27 -4.27 15 22 O -0.55 -8.07 16.03 5.26 0.08 -7.99 15 23 H 0.27 7.58 8.31 -40.82 -0.34 7.25 15 24 H 0.10 1.90 8.14 -51.92 -0.42 1.48 15 25 H 0.10 1.90 8.14 -51.92 -0.42 1.48 15 26 H 0.43 6.67 6.95 -40.82 -0.28 6.38 15 27 H 0.19 0.10 7.46 -52.49 -0.39 -0.29 15 28 H 0.40 0.65 7.75 -40.82 -0.32 0.34 15 29 H 0.40 1.76 8.93 -40.82 -0.36 1.39 15 LS Contribution 282.62 15.07 4.26 4.26 Total: -1.00 -40.51 282.62 -6.49 -47.00 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -3.38 Total: 2.32 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: -1.81 Total: 1.84 kcal Atomic # 7 Polarization: -50.67 SS G_CDS: 1.51 Total: -49.16 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: 0.17 Total: -19.27 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -40.51 -6.49 -47.00 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159476182.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.837 kcal (2) G-P(sol) polarization free energy of solvation -40.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds