Wall clock time and date at job start Mon Mar 30 2020 00:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86798 * 120.00278 * 2 1 4 4 H 1.48495 * 109.47164 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47097 * 300.00283 * 3 2 1 6 6 H 1.48498 * 109.47025 * 59.99894 * 3 2 1 7 7 C 1.38805 * 119.99750 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99957 * 180.02562 * 7 2 1 9 9 S 1.76202 * 119.99851 * 359.97438 * 7 2 1 10 10 C 1.81002 * 99.99465 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.46860 * 180.02562 * 10 9 7 12 12 O 1.21293 * 120.00304 * 0.02562 * 11 10 9 13 13 N 1.34780 * 120.00479 * 179.97438 * 11 10 9 14 14 C 1.39773 * 120.00304 * 180.02562 * 13 11 10 15 15 N 1.30920 * 126.07578 * 359.95713 * 14 13 11 16 16 N 1.39920 * 108.86121 * 179.80421 * 15 14 13 17 17 H 0.96996 * 125.68216 * 180.25095 * 16 15 14 18 18 C 1.34182 * 108.64710 * 0.39650 * 16 15 14 19 19 C 1.38104 * 107.53808 * 359.61431 * 18 16 15 20 20 C 1.47241 * 126.44936 * 180.22427 * 19 18 16 21 21 N 1.34773 * 119.99990 * 0.02562 * 20 19 18 22 22 O 1.21624 * 119.99730 * 180.02562 * 20 19 18 23 23 H 0.97000 * 119.99649 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.47219 * 60.00304 * 10 9 7 25 25 H 1.09000 * 109.47529 * 299.99462 * 10 9 7 26 26 H 0.97002 * 119.99232 * 0.02562 * 13 11 10 27 27 H 1.08002 * 126.23470 * 179.88472 * 18 16 15 28 28 H 0.97001 * 120.00050 * 0.02562 * 21 20 19 29 29 H 0.97000 * 120.00215 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7104 1.3463 0.0006 5 1 1.8917 2.3964 -1.2124 6 1 1.8917 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 16 1.1292 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9873 -5.3027 -0.0012 12 8 0.7909 -5.5024 -0.0021 13 7 2.8440 -6.3432 -0.0018 14 6 2.3538 -7.6522 -0.0029 15 7 1.0924 -8.0030 -0.0027 16 7 1.0115 -9.3999 -0.0086 17 1 0.1922 -9.9191 -0.0132 18 6 2.2559 -9.9018 -0.0038 19 6 3.1344 -8.8362 -0.0036 20 6 4.6047 -8.9147 -0.0037 21 7 5.2154 -10.1161 -0.0044 22 8 5.2681 -7.8952 -0.0030 23 1 -0.4850 0.8401 -0.0004 24 1 3.1244 -3.7314 0.8895 25 1 3.1244 -3.7315 -0.8905 26 1 3.8008 -6.1836 -0.0015 27 1 2.5221 -10.9485 -0.0047 28 1 4.6863 -10.9291 -0.0053 29 1 6.1840 -10.1678 -0.0041 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001159476182.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:52 Heat of formation + Delta-G solvation = -31.809103 kcal Electronic energy + Delta-G solvation = -17399.211965 eV Core-core repulsion = 14255.937888 eV Total energy + Delta-G solvation = -3143.274077 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.057 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.58676 -40.55659 -39.81789 -36.03988 -34.60302 -34.59141 -32.32985 -31.13944 -30.33244 -27.68920 -24.47719 -23.86697 -21.46502 -20.97145 -19.85335 -19.56850 -17.82928 -17.57553 -17.44783 -17.23038 -16.91762 -16.88953 -16.01287 -16.00340 -15.05551 -15.03951 -14.91497 -14.55955 -14.06246 -13.82529 -13.17780 -12.91714 -12.62156 -12.27611 -11.99815 -11.74099 -11.27314 -11.16488 -10.92371 -10.58827 -10.32536 -10.06017 -9.59354 -8.69547 -8.35934 -6.14637 0.57845 0.81842 1.12107 1.39347 1.41741 1.54540 1.68546 1.74951 2.25400 2.28461 2.50417 2.79425 2.98276 3.25308 3.53828 3.74837 4.03301 4.21520 4.27878 4.43978 4.50664 4.71446 5.41954 5.49663 5.87400 6.02400 6.19694 6.37939 6.54363 6.71370 7.04880 7.05750 7.47730 8.73757 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.036985 B = 0.003869 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.891604 B = 7234.390312 C = 7976.137280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.012 3.988 3 Si 1.002 2.998 4 H -0.258 1.258 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.547 4.547 8 H 0.084 0.916 9 S -0.140 6.140 10 C -0.128 4.128 11 C 0.526 3.474 12 O -0.512 6.512 13 N -0.627 5.627 14 C 0.327 3.673 15 N -0.338 5.338 16 N -0.439 5.439 17 H 0.464 0.536 18 C 0.169 3.831 19 C -0.342 4.342 20 C 0.599 3.401 21 N -0.825 5.825 22 O -0.601 6.601 23 H 0.272 0.728 24 H 0.114 0.886 25 H 0.114 0.886 26 H 0.436 0.564 27 H 0.261 0.739 28 H 0.419 0.581 29 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.370 -27.084 -0.023 29.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.823 3.177 4 H -0.181 1.181 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.694 4.694 8 H 0.102 0.898 9 S 0.087 5.913 10 C -0.279 4.279 11 C 0.312 3.688 12 O -0.383 6.383 13 N -0.280 5.280 14 C 0.068 3.932 15 N -0.170 5.170 16 N -0.146 5.146 17 H 0.313 0.687 18 C 0.013 3.987 19 C -0.359 4.359 20 C 0.386 3.614 21 N -0.389 5.389 22 O -0.483 6.483 23 H 0.081 0.919 24 H 0.132 0.868 25 H 0.132 0.868 26 H 0.278 0.722 27 H 0.276 0.724 28 H 0.251 0.749 29 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 7.301 -26.094 -0.023 27.096 hybrid contribution 2.370 0.608 0.002 2.446 sum 9.670 -25.486 -0.021 27.259 Atomic orbital electron populations 1.70192 1.07960 1.28629 1.47985 1.26163 0.96028 1.03371 0.93656 0.84860 0.78536 0.76112 0.78149 1.18119 1.19782 1.19795 1.23246 0.95445 0.91818 1.58940 0.89822 1.85540 1.09693 0.99001 1.97070 1.23345 1.04138 0.93069 1.07345 1.20478 0.86360 0.86634 0.75313 1.90767 1.16352 1.85264 1.45936 1.43071 1.11736 1.01075 1.72148 1.19576 0.91206 0.85900 0.96507 1.77955 1.16568 0.91502 1.30934 1.46067 1.09357 1.03845 1.55349 0.68709 1.23987 0.82724 1.00961 0.91048 1.20079 0.94580 0.91021 1.30242 1.17189 0.85674 0.84167 0.74331 1.43309 1.11866 1.06958 1.76724 1.90751 1.67012 1.36682 1.53836 0.91912 0.86757 0.86762 0.72216 0.72373 0.74925 0.75496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.16 13.22 21.65 0.29 -56.87 15 2 C 0.01 0.73 5.49 84.86 0.47 1.20 15 3 Si 1.00 44.88 29.55 68.60 2.03 46.91 15 4 H -0.26 -10.85 7.11 99.48 0.71 -10.14 15 5 H -0.27 -11.79 7.11 99.48 0.71 -11.08 15 6 H -0.27 -11.79 7.11 99.48 0.71 -11.09 15 7 C -0.55 -32.29 9.50 67.96 0.65 -31.65 15 8 H 0.08 4.62 7.80 -2.91 -0.02 4.60 15 9 S -0.14 -8.13 20.57 -56.49 -1.16 -9.29 15 10 C -0.13 -5.62 6.16 71.24 0.44 -5.18 15 11 C 0.53 22.68 7.81 87.66 0.68 23.36 15 12 O -0.51 -26.11 14.58 -3.07 -0.04 -26.15 15 13 N -0.63 -22.03 5.42 -306.87 -1.66 -23.70 15 14 C 0.33 10.35 7.78 133.90 1.04 11.39 15 15 N -0.34 -10.92 10.86 -53.91 -0.59 -11.50 15 16 N -0.44 -6.95 7.27 -56.32 -0.41 -7.36 15 17 H 0.46 3.61 8.96 -213.44 -1.91 1.69 15 18 C 0.17 1.52 11.51 84.30 0.97 2.49 15 19 C -0.34 -6.91 6.14 -20.06 -0.12 -7.04 15 20 C 0.60 11.56 8.08 86.61 0.70 12.26 15 21 N -0.82 -5.62 8.86 -176.02 -1.56 -7.18 15 22 O -0.60 -17.29 16.03 -4.11 -0.07 -17.35 15 23 H 0.27 15.73 8.31 -92.71 -0.77 14.96 15 24 H 0.11 4.56 8.14 -2.40 -0.02 4.54 15 25 H 0.11 4.56 8.14 -2.40 -0.02 4.54 15 26 H 0.44 13.84 6.95 -92.71 -0.64 13.20 15 27 H 0.26 -1.75 7.46 -2.91 -0.02 -1.77 15 28 H 0.42 -0.93 7.75 -92.71 -0.72 -1.64 15 29 H 0.41 2.19 8.93 -92.71 -0.83 1.36 15 Total: -1.00 -95.31 282.62 -1.19 -96.50 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -2.84 Total: 9.16 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: 4.82 Total: 6.83 kcal Atomic # 7 Polarization: -102.67 SS G_CDS: -3.93 Total: -106.60 kcal Atomic # 8 Polarization: -43.39 SS G_CDS: -0.11 Total: -43.50 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Atomic # 16 Polarization: -8.13 SS G_CDS: -1.16 Total: -9.29 kcal Total: -95.31 -1.19 -96.50 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159476182.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.687 kcal (2) G-P(sol) polarization free energy of solvation -95.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds