Wall clock time and date at job start Mon Mar 30 2020 01:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45196 * 109.47405 * 2 1 4 4 C 1.34785 * 117.00461 * 180.02562 * 3 2 1 5 5 O 1.21536 * 119.99523 * 359.97438 * 4 3 2 6 6 C 1.47242 * 120.00453 * 180.02562 * 4 3 2 7 7 C 1.40107 * 120.60090 * 5.75142 * 6 4 3 8 8 C 1.38218 * 118.37868 * 180.26403 * 7 6 4 9 9 C 1.38688 * 119.50956 * 359.72874 * 8 7 6 10 10 Cl 1.73599 * 119.39309 * 179.97438 * 9 8 7 11 11 N 1.31888 * 121.20547 * 359.97438 * 9 8 7 12 12 C 1.32486 * 121.76434 * 0.02562 * 11 9 8 13 13 N 1.38182 * 119.82784 * 179.97438 * 12 11 9 14 14 C 1.36878 * 119.99925 * 354.91728 * 13 12 11 15 15 H 1.08005 * 120.00240 * 0.27156 * 14 13 12 16 16 C 1.38880 * 119.99794 * 180.27164 * 14 13 12 17 17 N 1.31508 * 120.00274 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99750 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47218 * 60.00140 * 18 16 14 20 20 H 1.48504 * 109.47095 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47268 * 299.99906 * 18 16 14 22 22 H 1.08995 * 109.47204 * 299.99928 * 1 2 3 23 23 H 1.09005 * 109.46865 * 60.00489 * 1 2 3 24 24 H 1.09001 * 109.46973 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47349 * 239.99452 * 2 1 3 26 26 H 1.09000 * 109.47377 * 120.00023 * 2 1 3 27 27 H 1.08003 * 120.80869 * 359.97438 * 7 6 4 28 28 H 1.07999 * 120.23954 * 179.75049 * 8 7 6 29 29 H 0.97003 * 119.99529 * 175.18388 * 13 12 11 30 30 H 0.96997 * 120.00258 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3502 1.5455 -0.0005 5 8 4.0905 0.5817 -0.0005 6 6 3.9131 2.9061 0.0000 7 6 3.0770 4.0238 0.1219 8 6 3.6537 5.2799 0.1114 9 6 5.0300 5.3987 -0.0124 10 17 5.7510 6.9778 -0.0259 11 7 5.8008 4.3340 -0.1200 12 6 5.3004 3.1073 -0.1156 13 7 6.1451 2.0199 -0.2314 14 6 7.4818 2.2124 -0.4546 15 1 7.8770 3.2143 -0.5358 16 6 8.3299 1.1194 -0.5766 17 7 7.8487 -0.1005 -0.4783 18 14 10.1540 1.3822 -0.8819 19 1 10.7357 2.1643 0.2384 20 1 10.8352 0.0658 -0.9734 21 1 10.3411 2.1252 -2.1540 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 2.0076 3.9068 0.2170 28 1 3.0372 6.1622 0.1994 29 1 5.7902 1.1201 -0.1584 30 1 8.4410 -0.8639 -0.5639 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163182013.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:33 Heat of formation + Delta-G solvation = -57.398172 kcal Electronic energy + Delta-G solvation = -18095.517041 eV Core-core repulsion = 14916.796882 eV Total energy + Delta-G solvation = -3178.720160 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.03443 -38.70984 -36.41908 -35.80780 -35.19129 -32.35948 -31.92853 -31.09576 -28.90674 -25.23620 -24.21474 -22.69410 -21.65231 -20.74888 -18.08959 -17.24538 -17.16088 -16.26821 -16.04524 -15.41030 -14.76803 -14.28388 -14.05203 -13.61930 -13.43093 -13.39369 -12.65331 -12.46937 -12.10596 -11.88459 -11.77916 -11.65757 -11.28733 -11.17245 -10.86780 -10.67243 -10.57706 -10.26921 -10.15355 -9.68306 -9.20481 -8.80711 -8.65090 -7.31253 -6.94192 -4.03199 1.42353 2.29126 2.46599 3.02864 3.06430 3.07047 3.26057 3.32666 3.81529 4.43329 4.78703 5.00570 5.09541 5.13216 5.34164 5.47225 5.55573 5.84139 5.89485 5.96321 6.03362 6.16977 6.24912 6.66624 6.87637 6.96465 7.04630 7.31111 7.60367 8.31948 8.51865 8.58123 8.96235 9.45947 10.16170 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.011688 B = 0.008108 C = 0.004810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2395.026226 B = 3452.427044 C = 5819.617641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.063 3.937 3 O -0.362 6.362 4 C 0.512 3.488 5 O -0.532 6.532 6 C -0.319 4.319 7 C 0.057 3.943 8 C -0.314 4.314 9 C 0.274 3.726 10 Cl -0.065 7.065 11 N -0.527 5.527 12 C 0.356 3.644 13 N -0.460 5.460 14 C -0.283 4.283 15 H 0.123 0.877 16 C 0.024 3.976 17 N -0.845 5.845 18 Si 0.947 3.053 19 H -0.264 1.264 20 H -0.278 1.278 21 H -0.265 1.265 22 H 0.064 0.936 23 H 0.064 0.936 24 H 0.074 0.926 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.132 0.868 28 H 0.125 0.875 29 H 0.430 0.570 30 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.927 3.467 0.601 9.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 O -0.279 6.279 4 C 0.363 3.637 5 O -0.424 6.424 6 C -0.331 4.331 7 C 0.032 3.968 8 C -0.341 4.341 9 C 0.091 3.909 10 Cl -0.037 7.037 11 N -0.246 5.246 12 C 0.107 3.893 13 N -0.067 5.067 14 C -0.415 4.415 15 H 0.140 0.860 16 C -0.186 4.186 17 N -0.477 5.477 18 Si 0.771 3.229 19 H -0.189 1.189 20 H -0.203 1.203 21 H -0.189 1.189 22 H 0.083 0.917 23 H 0.083 0.917 24 H 0.093 0.907 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.150 0.850 28 H 0.143 0.857 29 H 0.281 0.719 30 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.391 2.722 0.460 7.889 hybrid contribution -0.032 -0.463 -0.019 0.465 sum -7.423 2.259 0.441 7.771 Atomic orbital electron populations 1.21778 0.93235 1.02443 1.03212 1.22864 0.94656 0.81263 1.02396 1.86513 1.24700 1.31093 1.85612 1.20888 0.79732 0.89699 0.73380 1.90555 1.58947 1.42725 1.50167 1.18466 0.92504 0.90069 1.32066 1.21130 0.98522 0.90523 0.86655 1.20698 0.92735 0.97847 1.22854 1.21233 0.88696 0.86287 0.94653 1.98338 1.85652 1.23214 1.96474 1.66211 1.39088 0.96878 1.22423 1.17266 0.85606 0.85629 1.00756 1.42299 1.07003 1.07924 1.49493 1.20399 0.82530 0.96166 1.42445 0.85975 1.25798 1.02577 0.94340 0.95858 1.69751 1.38122 0.98604 1.41176 0.85644 0.79187 0.78147 0.79925 1.18884 1.20270 1.18927 0.91698 0.91685 0.90717 0.91600 0.91632 0.84985 0.85699 0.71876 0.90333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 10.29 37.16 0.38 -1.16 16 2 C 0.06 0.91 6.20 37.16 0.23 1.14 16 3 O -0.36 -6.44 9.56 -40.72 -0.39 -6.83 16 4 C 0.51 11.05 7.88 34.39 0.27 11.32 16 5 O -0.53 -13.00 13.47 -19.29 -0.26 -13.26 16 6 C -0.32 -6.99 5.91 -104.63 -0.62 -7.61 16 7 C 0.06 1.04 9.73 -38.89 -0.38 0.66 16 8 C -0.31 -5.60 9.85 -39.42 -0.39 -5.99 16 9 C 0.27 5.53 7.27 -17.36 -0.13 5.41 16 10 Cl -0.06 -1.11 29.10 -51.86 -1.51 -2.62 16 11 N -0.53 -12.46 9.05 -9.27 -0.08 -12.54 16 12 C 0.36 8.80 7.44 -155.16 -1.15 7.65 16 13 N -0.46 -12.29 5.29 -10.95 -0.06 -12.35 16 14 C -0.28 -7.53 9.70 -15.06 -0.15 -7.68 16 15 H 0.12 3.21 7.08 -52.48 -0.37 2.84 16 16 C 0.02 0.61 5.50 -17.45 -0.10 0.51 16 17 N -0.85 -22.47 13.05 55.49 0.72 -21.75 16 18 Si 0.95 19.41 29.55 -169.99 -5.02 14.38 16 19 H -0.26 -5.34 7.11 56.52 0.40 -4.93 16 20 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 21 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 22 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 23 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 24 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 26 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.13 1.99 7.71 -52.48 -0.40 1.58 16 28 H 0.13 1.84 8.06 -52.49 -0.42 1.42 16 29 H 0.43 11.92 4.39 -40.92 -0.18 11.74 16 30 H 0.29 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 286.39 15.07 4.32 4.32 Total: -1.00 -28.52 286.39 -6.93 -35.45 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -2.63 Total: 10.94 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: -2.02 Total: 4.25 kcal Atomic # 7 Polarization: -47.22 SS G_CDS: 0.58 Total: -46.64 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -0.65 Total: -20.09 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.02 Total: 14.38 kcal Atomic # 17 Polarization: -1.11 SS G_CDS: -1.51 Total: -2.62 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -28.52 -6.93 -35.45 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163182013.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.945 kcal (2) G-P(sol) polarization free energy of solvation -28.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds