Wall clock time and date at job start Mon Mar 30 2020 01:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45196 * 109.47405 * 2 1 4 4 C 1.34785 * 117.00461 * 180.02562 * 3 2 1 5 5 O 1.21536 * 119.99523 * 359.97438 * 4 3 2 6 6 C 1.47242 * 120.00453 * 180.02562 * 4 3 2 7 7 C 1.40107 * 120.60090 * 5.75142 * 6 4 3 8 8 C 1.38218 * 118.37868 * 180.26403 * 7 6 4 9 9 C 1.38688 * 119.50956 * 359.72874 * 8 7 6 10 10 Cl 1.73599 * 119.39309 * 179.97438 * 9 8 7 11 11 N 1.31888 * 121.20547 * 359.97438 * 9 8 7 12 12 C 1.32486 * 121.76434 * 0.02562 * 11 9 8 13 13 N 1.38182 * 119.82784 * 179.97438 * 12 11 9 14 14 C 1.36878 * 119.99925 * 354.91728 * 13 12 11 15 15 H 1.08005 * 120.00240 * 0.27156 * 14 13 12 16 16 C 1.38880 * 119.99794 * 180.27164 * 14 13 12 17 17 N 1.31508 * 120.00274 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99750 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47218 * 60.00140 * 18 16 14 20 20 H 1.48504 * 109.47095 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47268 * 299.99906 * 18 16 14 22 22 H 1.08995 * 109.47204 * 299.99928 * 1 2 3 23 23 H 1.09005 * 109.46865 * 60.00489 * 1 2 3 24 24 H 1.09001 * 109.46973 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47349 * 239.99452 * 2 1 3 26 26 H 1.09000 * 109.47377 * 120.00023 * 2 1 3 27 27 H 1.08003 * 120.80869 * 359.97438 * 7 6 4 28 28 H 1.07999 * 120.23954 * 179.75049 * 8 7 6 29 29 H 0.97003 * 119.99529 * 175.18388 * 13 12 11 30 30 H 0.96997 * 120.00258 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3502 1.5455 -0.0005 5 8 4.0905 0.5817 -0.0005 6 6 3.9131 2.9061 0.0000 7 6 3.0770 4.0238 0.1219 8 6 3.6537 5.2799 0.1114 9 6 5.0300 5.3987 -0.0124 10 17 5.7510 6.9778 -0.0259 11 7 5.8008 4.3340 -0.1200 12 6 5.3004 3.1073 -0.1156 13 7 6.1451 2.0199 -0.2314 14 6 7.4818 2.2124 -0.4546 15 1 7.8770 3.2143 -0.5358 16 6 8.3299 1.1194 -0.5766 17 7 7.8487 -0.1005 -0.4783 18 14 10.1540 1.3822 -0.8819 19 1 10.7357 2.1643 0.2384 20 1 10.8352 0.0658 -0.9734 21 1 10.3411 2.1252 -2.1540 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 2.0076 3.9068 0.2170 28 1 3.0372 6.1622 0.1994 29 1 5.7902 1.1201 -0.1584 30 1 8.4410 -0.8639 -0.5639 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163182013.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:32 Heat of formation + Delta-G solvation = -74.082553 kcal Electronic energy + Delta-G solvation = -18096.240530 eV Core-core repulsion = 14916.796882 eV Total energy + Delta-G solvation = -3179.443649 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.72847 -40.37384 -38.02710 -37.38878 -36.87554 -34.10126 -33.51607 -32.33850 -30.60824 -27.02932 -25.79821 -24.00254 -23.29019 -22.34387 -19.89294 -18.90532 -18.79326 -17.87681 -17.49958 -17.13610 -16.40983 -15.97073 -15.64257 -15.28063 -14.90242 -14.86483 -13.99448 -13.72502 -13.56429 -13.53021 -13.40054 -12.91223 -12.74720 -12.66714 -12.44942 -12.17304 -12.14714 -11.87942 -11.48861 -11.40503 -10.91013 -10.53547 -10.34206 -9.06142 -8.71684 -5.97168 -0.24202 0.66557 0.88600 1.35534 1.46055 1.49692 1.61497 1.78788 2.16087 2.69485 3.02012 3.20927 3.84977 4.03635 4.07047 4.15310 4.28399 4.38718 4.48274 4.57957 4.88141 4.96853 5.11599 5.16896 5.20302 5.29574 5.42516 5.63538 5.84347 6.51975 6.78206 6.87545 7.17096 7.62433 8.42299 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.011688 B = 0.008108 C = 0.004810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2395.026226 B = 3452.427044 C = 5819.617641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.051 3.949 3 O -0.349 6.349 4 C 0.515 3.485 5 O -0.563 6.563 6 C -0.333 4.333 7 C 0.068 3.932 8 C -0.284 4.284 9 C 0.262 3.738 10 Cl -0.035 7.035 11 N -0.568 5.568 12 C 0.365 3.635 13 N -0.503 5.503 14 C -0.320 4.320 15 H 0.112 0.888 16 C -0.021 4.021 17 N -0.899 5.899 18 Si 1.013 2.987 19 H -0.261 1.261 20 H -0.270 1.270 21 H -0.261 1.261 22 H 0.074 0.926 23 H 0.072 0.928 24 H 0.100 0.900 25 H 0.058 0.942 26 H 0.061 0.939 27 H 0.177 0.823 28 H 0.172 0.828 29 H 0.421 0.579 30 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.595 5.661 0.812 12.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.023 4.023 3 O -0.266 6.266 4 C 0.367 3.633 5 O -0.457 6.457 6 C -0.345 4.345 7 C 0.043 3.957 8 C -0.310 4.310 9 C 0.084 3.916 10 Cl -0.007 7.007 11 N -0.289 5.289 12 C 0.118 3.882 13 N -0.115 5.115 14 C -0.451 4.451 15 H 0.130 0.870 16 C -0.224 4.224 17 N -0.533 5.533 18 Si 0.833 3.167 19 H -0.185 1.185 20 H -0.195 1.195 21 H -0.185 1.185 22 H 0.093 0.907 23 H 0.091 0.909 24 H 0.118 0.882 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.194 0.806 28 H 0.189 0.811 29 H 0.270 0.730 30 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.109 5.022 0.676 11.308 hybrid contribution 0.298 -0.792 -0.020 0.846 sum -9.812 4.230 0.657 10.705 Atomic orbital electron populations 1.21795 0.89292 1.04440 1.04035 1.23284 0.97596 0.79428 1.01943 1.86494 1.22151 1.33259 1.84693 1.20962 0.80831 0.89232 0.72324 1.90567 1.60108 1.43835 1.51229 1.18880 0.92117 0.91834 1.31670 1.21635 1.00254 0.89188 0.84670 1.21309 0.91985 0.99391 1.18348 1.21888 0.89954 0.86804 0.92963 1.98353 1.85552 1.20565 1.96188 1.66277 1.40521 0.97332 1.24753 1.17908 0.86727 0.86005 0.97588 1.42283 1.07301 1.07785 1.54130 1.20390 0.83252 0.96044 1.45408 0.86997 1.26667 1.06533 0.93775 0.95472 1.69847 1.39347 0.99265 1.44873 0.84696 0.74032 0.78202 0.79723 1.18514 1.19454 1.18515 0.90722 0.90930 0.88161 0.92354 0.92065 0.80599 0.81075 0.73018 0.90414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 10.29 71.98 0.74 -1.66 16 2 C 0.05 1.41 6.20 71.98 0.45 1.86 16 3 O -0.35 -11.75 9.56 -56.97 -0.54 -12.29 16 4 C 0.52 22.09 7.88 70.19 0.55 22.64 16 5 O -0.56 -28.51 13.47 19.72 0.27 -28.25 16 6 C -0.33 -14.23 5.91 -19.87 -0.12 -14.35 16 7 C 0.07 2.18 9.73 22.72 0.22 2.40 16 8 C -0.28 -8.77 9.85 22.37 0.22 -8.55 16 9 C 0.26 9.91 7.27 84.79 0.62 10.53 16 10 Cl -0.03 -1.09 29.10 -2.72 -0.08 -1.17 16 11 N -0.57 -26.76 9.05 -183.23 -1.66 -28.42 16 12 C 0.37 18.32 7.44 133.69 0.99 19.32 16 13 N -0.50 -28.42 5.29 -188.55 -1.00 -29.42 16 14 C -0.32 -18.12 9.70 84.06 0.82 -17.30 16 15 H 0.11 6.26 7.08 -2.91 -0.02 6.24 16 16 C -0.02 -1.14 5.50 84.90 0.47 -0.68 16 17 N -0.90 -51.11 13.05 21.66 0.28 -50.83 16 18 Si 1.01 41.84 29.55 68.60 2.03 43.87 16 19 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 20 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 21 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 22 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 23 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 24 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.18 4.20 7.71 -2.91 -0.02 4.18 16 28 H 0.17 3.82 8.06 -2.91 -0.02 3.80 16 29 H 0.42 24.84 4.39 -94.36 -0.41 24.43 16 30 H 0.29 14.98 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -66.76 286.39 5.02 -61.74 By element: Atomic # 1 Polarization: 29.80 SS G_CDS: 0.77 Total: 30.57 kcal Atomic # 6 Polarization: 9.24 SS G_CDS: 4.96 Total: 14.20 kcal Atomic # 7 Polarization: -106.30 SS G_CDS: -2.37 Total: -108.67 kcal Atomic # 8 Polarization: -40.26 SS G_CDS: -0.28 Total: -40.54 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.87 kcal Atomic # 17 Polarization: -1.09 SS G_CDS: -0.08 Total: -1.17 kcal Total: -66.76 5.02 -61.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163182013.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.345 kcal (2) G-P(sol) polarization free energy of solvation -66.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds