Wall clock time and date at job start Mon Mar 30 2020 01:05:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 O 1.45196 * 109.47405 * 2 1
4 4 C 1.34785 * 117.00461 * 180.02562 * 3 2 1
5 5 O 1.21536 * 119.99523 * 359.97438 * 4 3 2
6 6 C 1.47242 * 120.00453 * 180.02562 * 4 3 2
7 7 C 1.40107 * 120.60090 * 5.75142 * 6 4 3
8 8 C 1.38218 * 118.37868 * 180.26403 * 7 6 4
9 9 C 1.38688 * 119.50956 * 359.72874 * 8 7 6
10 10 Cl 1.73599 * 119.39309 * 179.97438 * 9 8 7
11 11 N 1.31888 * 121.20547 * 359.97438 * 9 8 7
12 12 C 1.32486 * 121.76434 * 0.02562 * 11 9 8
13 13 N 1.38182 * 119.82784 * 179.97438 * 12 11 9
14 14 C 1.36878 * 119.99925 * 354.91728 * 13 12 11
15 15 H 1.08005 * 120.00240 * 0.27156 * 14 13 12
16 16 C 1.38880 * 119.99794 * 180.27164 * 14 13 12
17 17 N 1.31508 * 120.00274 * 0.02562 * 16 14 13
18 18 Si 1.86802 * 119.99750 * 179.97438 * 16 14 13
19 19 H 1.48497 * 109.47218 * 60.00140 * 18 16 14
20 20 H 1.48504 * 109.47095 * 180.02562 * 18 16 14
21 21 H 1.48502 * 109.47268 * 299.99906 * 18 16 14
22 22 H 1.08995 * 109.47204 * 299.99928 * 1 2 3
23 23 H 1.09005 * 109.46865 * 60.00489 * 1 2 3
24 24 H 1.09001 * 109.46973 * 179.97438 * 1 2 3
25 25 H 1.09003 * 109.47349 * 239.99452 * 2 1 3
26 26 H 1.09000 * 109.47377 * 120.00023 * 2 1 3
27 27 H 1.08003 * 120.80869 * 359.97438 * 7 6 4
28 28 H 1.07999 * 120.23954 * 179.75049 * 8 7 6
29 29 H 0.97003 * 119.99529 * 175.18388 * 13 12 11
30 30 H 0.96997 * 120.00258 * 179.97438 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0140 1.3689 0.0000
4 6 3.3502 1.5455 -0.0005
5 8 4.0905 0.5817 -0.0005
6 6 3.9131 2.9061 0.0000
7 6 3.0770 4.0238 0.1219
8 6 3.6537 5.2799 0.1114
9 6 5.0300 5.3987 -0.0124
10 17 5.7510 6.9778 -0.0259
11 7 5.8008 4.3340 -0.1200
12 6 5.3004 3.1073 -0.1156
13 7 6.1451 2.0199 -0.2314
14 6 7.4818 2.2124 -0.4546
15 1 7.8770 3.2143 -0.5358
16 6 8.3299 1.1194 -0.5766
17 7 7.8487 -0.1005 -0.4783
18 14 10.1540 1.3822 -0.8819
19 1 10.7357 2.1643 0.2384
20 1 10.8352 0.0658 -0.9734
21 1 10.3411 2.1252 -2.1540
22 1 -0.3633 0.5138 0.8899
23 1 -0.3633 0.5138 -0.8901
24 1 -0.3633 -1.0277 -0.0005
25 1 1.8933 -0.5139 -0.8899
26 1 1.8933 -0.5138 0.8900
27 1 2.0076 3.9068 0.2170
28 1 3.0372 6.1622 0.1994
29 1 5.7902 1.1201 -0.1584
30 1 8.4410 -0.8639 -0.5639
RHF calculation, no. of doubly occupied orbitals= 46
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001163182013.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:05:32
Heat of formation + Delta-G solvation = -74.082553 kcal
Electronic energy + Delta-G solvation = -18096.240530 eV
Core-core repulsion = 14916.796882 eV
Total energy + Delta-G solvation = -3179.443649 eV
No. of doubly occupied orbitals = 46
Molecular weight
(most abundant/longest-lived isotopes) = 270.056 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-41.72847 -40.37384 -38.02710 -37.38878 -36.87554 -34.10126 -33.51607 -32.33850
-30.60824 -27.02932 -25.79821 -24.00254 -23.29019 -22.34387 -19.89294 -18.90532
-18.79326 -17.87681 -17.49958 -17.13610 -16.40983 -15.97073 -15.64257 -15.28063
-14.90242 -14.86483 -13.99448 -13.72502 -13.56429 -13.53021 -13.40054 -12.91223
-12.74720 -12.66714 -12.44942 -12.17304 -12.14714 -11.87942 -11.48861 -11.40503
-10.91013 -10.53547 -10.34206 -9.06142 -8.71684 -5.97168 -0.24202 0.66557
0.88600 1.35534 1.46055 1.49692 1.61497 1.78788 2.16087 2.69485
3.02012 3.20927 3.84977 4.03635 4.07047 4.15310 4.28399 4.38718
4.48274 4.57957 4.88141 4.96853 5.11599 5.16896 5.20302 5.29574
5.42516 5.63538 5.84347 6.51975 6.78206 6.87545 7.17096 7.62433
8.42299
Molecular weight = 270.06amu
Principal moments of inertia in cm(-1)
A = 0.011688 B = 0.008108 C = 0.004810
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2395.026226 B = 3452.427044 C = 5819.617641
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C 0.051 3.949
3 O -0.349 6.349
4 C 0.515 3.485
5 O -0.563 6.563
6 C -0.333 4.333
7 C 0.068 3.932
8 C -0.284 4.284
9 C 0.262 3.738
10 Cl -0.035 7.035
11 N -0.568 5.568
12 C 0.365 3.635
13 N -0.503 5.503
14 C -0.320 4.320
15 H 0.112 0.888
16 C -0.021 4.021
17 N -0.899 5.899
18 Si 1.013 2.987
19 H -0.261 1.261
20 H -0.270 1.270
21 H -0.261 1.261
22 H 0.074 0.926
23 H 0.072 0.928
24 H 0.100 0.900
25 H 0.058 0.942
26 H 0.061 0.939
27 H 0.177 0.823
28 H 0.172 0.828
29 H 0.421 0.579
30 H 0.286 0.714
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.595 5.661 0.812 12.929
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C -0.023 4.023
3 O -0.266 6.266
4 C 0.367 3.633
5 O -0.457 6.457
6 C -0.345 4.345
7 C 0.043 3.957
8 C -0.310 4.310
9 C 0.084 3.916
10 Cl -0.007 7.007
11 N -0.289 5.289
12 C 0.118 3.882
13 N -0.115 5.115
14 C -0.451 4.451
15 H 0.130 0.870
16 C -0.224 4.224
17 N -0.533 5.533
18 Si 0.833 3.167
19 H -0.185 1.185
20 H -0.195 1.195
21 H -0.185 1.185
22 H 0.093 0.907
23 H 0.091 0.909
24 H 0.118 0.882
25 H 0.076 0.924
26 H 0.079 0.921
27 H 0.194 0.806
28 H 0.189 0.811
29 H 0.270 0.730
30 H 0.096 0.904
Dipole moment (debyes) X Y Z Total
from point charges -10.109 5.022 0.676 11.308
hybrid contribution 0.298 -0.792 -0.020 0.846
sum -9.812 4.230 0.657 10.705
Atomic orbital electron populations
1.21795 0.89292 1.04440 1.04035 1.23284 0.97596 0.79428 1.01943
1.86494 1.22151 1.33259 1.84693 1.20962 0.80831 0.89232 0.72324
1.90567 1.60108 1.43835 1.51229 1.18880 0.92117 0.91834 1.31670
1.21635 1.00254 0.89188 0.84670 1.21309 0.91985 0.99391 1.18348
1.21888 0.89954 0.86804 0.92963 1.98353 1.85552 1.20565 1.96188
1.66277 1.40521 0.97332 1.24753 1.17908 0.86727 0.86005 0.97588
1.42283 1.07301 1.07785 1.54130 1.20390 0.83252 0.96044 1.45408
0.86997 1.26667 1.06533 0.93775 0.95472 1.69847 1.39347 0.99265
1.44873 0.84696 0.74032 0.78202 0.79723 1.18514 1.19454 1.18515
0.90722 0.90930 0.88161 0.92354 0.92065 0.80599 0.81075 0.73018
0.90414
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.40 10.29 71.98 0.74 -1.66 16
2 C 0.05 1.41 6.20 71.98 0.45 1.86 16
3 O -0.35 -11.75 9.56 -56.97 -0.54 -12.29 16
4 C 0.52 22.09 7.88 70.19 0.55 22.64 16
5 O -0.56 -28.51 13.47 19.72 0.27 -28.25 16
6 C -0.33 -14.23 5.91 -19.87 -0.12 -14.35 16
7 C 0.07 2.18 9.73 22.72 0.22 2.40 16
8 C -0.28 -8.77 9.85 22.37 0.22 -8.55 16
9 C 0.26 9.91 7.27 84.79 0.62 10.53 16
10 Cl -0.03 -1.09 29.10 -2.72 -0.08 -1.17 16
11 N -0.57 -26.76 9.05 -183.23 -1.66 -28.42 16
12 C 0.37 18.32 7.44 133.69 0.99 19.32 16
13 N -0.50 -28.42 5.29 -188.55 -1.00 -29.42 16
14 C -0.32 -18.12 9.70 84.06 0.82 -17.30 16
15 H 0.11 6.26 7.08 -2.91 -0.02 6.24 16
16 C -0.02 -1.14 5.50 84.90 0.47 -0.68 16
17 N -0.90 -51.11 13.05 21.66 0.28 -50.83 16
18 Si 1.01 41.84 29.55 68.60 2.03 43.87 16
19 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16
20 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16
21 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16
22 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16
23 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16
24 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16
25 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16
26 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16
27 H 0.18 4.20 7.71 -2.91 -0.02 4.18 16
28 H 0.17 3.82 8.06 -2.91 -0.02 3.80 16
29 H 0.42 24.84 4.39 -94.36 -0.41 24.43 16
30 H 0.29 14.98 8.31 -92.71 -0.77 14.21 16
Total: -1.00 -66.76 286.39 5.02 -61.74
By element:
Atomic # 1 Polarization: 29.80 SS G_CDS: 0.77 Total: 30.57 kcal
Atomic # 6 Polarization: 9.24 SS G_CDS: 4.96 Total: 14.20 kcal
Atomic # 7 Polarization: -106.30 SS G_CDS: -2.37 Total: -108.67 kcal
Atomic # 8 Polarization: -40.26 SS G_CDS: -0.28 Total: -40.54 kcal
Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.87 kcal
Atomic # 17 Polarization: -1.09 SS G_CDS: -0.08 Total: -1.17 kcal
Total: -66.76 5.02 -61.74 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001163182013.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -12.345 kcal
(2) G-P(sol) polarization free energy of solvation -66.762 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.107 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.025 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.738 kcal
(6) G-S(sol) free energy of system = (1) + (5) -74.083 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds