Wall clock time and date at job start Mon Mar 30 2020 01:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47364 * 2 1 4 4 N 1.31709 * 119.83035 * 89.99996 * 3 2 1 5 5 C 1.33019 * 120.02586 * 180.02562 * 4 3 2 6 6 C 1.47703 * 120.15160 * 180.02562 * 5 4 3 7 7 N 1.34773 * 119.99638 * 5.50222 * 6 5 4 8 8 O 1.21569 * 119.99995 * 185.49826 * 6 5 4 9 9 C 1.40530 * 119.70009 * 359.97438 * 5 4 3 10 10 N 1.38227 * 120.16454 * 180.02562 * 9 5 4 11 11 C 1.36886 * 120.00009 * 174.63320 * 10 9 5 12 12 H 1.07999 * 120.00395 * 359.97438 * 11 10 9 13 13 C 1.38879 * 119.99638 * 179.72165 * 11 10 9 14 14 N 1.31511 * 120.00023 * 0.27785 * 13 11 10 15 15 Si 1.86803 * 119.99804 * 180.27336 * 13 11 10 16 16 H 1.48504 * 109.47197 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.46995 * 120.00061 * 15 13 11 18 18 H 1.48496 * 109.47050 * 240.00225 * 15 13 11 19 19 N 1.32865 * 119.67386 * 0.27506 * 9 5 4 20 20 C 1.32107 * 119.96697 * 359.43067 * 19 9 5 21 21 Cl 1.73600 * 119.84802 * 180.27452 * 20 19 9 22 22 H 1.09006 * 109.47004 * 59.99573 * 1 2 3 23 23 H 1.08999 * 109.47487 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47006 * 299.99736 * 1 2 3 25 25 H 1.09005 * 109.46936 * 240.00781 * 2 1 3 26 26 H 1.08994 * 109.47349 * 120.00671 * 2 1 3 27 27 H 0.97001 * 120.00191 * 359.97438 * 7 6 5 28 28 H 0.96997 * 120.00146 * 179.97438 * 7 6 5 29 29 H 0.96998 * 119.99498 * 354.62591 * 10 9 5 30 30 H 0.97002 * 119.99537 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2508 2.0385 1.1426 5 6 2.6937 3.2928 1.1471 6 6 2.9402 3.9879 2.4268 7 7 2.8232 3.3185 3.5907 8 8 3.2485 5.1638 2.4302 9 6 2.9273 3.9531 -0.0712 10 7 3.3881 5.2563 -0.0777 11 6 3.7189 5.8594 -1.2611 12 1 3.6203 5.3169 -2.1898 13 6 4.1764 7.1706 -1.2681 14 7 4.2969 7.8311 -0.1373 15 14 4.6207 7.9962 -2.8839 16 1 4.3975 7.0460 -4.0031 17 1 3.7683 9.1968 -3.0770 18 1 6.0488 8.4023 -2.8560 19 7 2.6982 3.3203 -1.2168 20 6 2.2638 2.0728 -1.2062 21 17 1.9723 1.2466 -2.7049 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5137 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 2.5769 2.3802 3.5879 28 1 2.9854 3.7748 4.4311 29 1 3.4768 5.7434 0.7564 30 1 4.6168 8.7468 -0.1422 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163182157.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:09 Heat of formation + Delta-G solvation = -5.643716 kcal Electronic energy + Delta-G solvation = -18345.846241 eV Core-core repulsion = 15201.663074 eV Total energy + Delta-G solvation = -3144.183167 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.062 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.22572 -38.30110 -36.36815 -35.94319 -33.78659 -33.26545 -32.13399 -31.95991 -28.37799 -25.47295 -24.54281 -23.20345 -21.36256 -20.24886 -18.62041 -17.24550 -17.20685 -16.79210 -15.51598 -14.99137 -14.81209 -14.45915 -13.94506 -13.85708 -13.63101 -13.38271 -13.05521 -12.22568 -12.00793 -11.77838 -11.38592 -11.28969 -11.07450 -11.00438 -10.72465 -10.60635 -10.49870 -10.38210 -9.75580 -9.51797 -9.18835 -8.97946 -8.27092 -7.31716 -7.05661 -4.11060 1.37989 2.19769 2.36184 2.97596 2.97785 3.05851 3.48898 3.72969 4.13560 4.41347 4.69929 4.91310 4.95763 5.34859 5.61983 5.70456 5.81939 5.83457 6.07286 6.23488 6.24746 6.52556 6.59879 6.92220 7.08078 7.22991 7.47097 7.86098 8.10845 8.26807 8.57365 8.76140 8.97846 9.34623 10.03351 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.017252 B = 0.007382 C = 0.005272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.567024 B = 3792.091442 C = 5310.162231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.043 4.043 3 C -0.072 4.072 4 N -0.341 5.341 5 C -0.128 4.128 6 C 0.591 3.409 7 N -0.847 5.847 8 O -0.556 6.556 9 C 0.296 3.704 10 N -0.442 5.442 11 C -0.281 4.281 12 H 0.124 0.876 13 C 0.026 3.974 14 N -0.834 5.834 15 Si 0.947 3.053 16 H -0.257 1.257 17 H -0.272 1.272 18 H -0.272 1.272 19 N -0.494 5.494 20 C 0.233 3.767 21 Cl -0.052 7.052 22 H 0.051 0.949 23 H 0.050 0.950 24 H 0.052 0.948 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.406 0.594 28 H 0.395 0.605 29 H 0.433 0.567 30 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.361 -9.758 0.902 10.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.081 4.081 3 C -0.224 4.224 4 N -0.057 5.057 5 C -0.281 4.281 6 C 0.380 3.620 7 N -0.409 5.409 8 O -0.434 6.434 9 C 0.045 3.955 10 N -0.049 5.049 11 C -0.414 4.414 12 H 0.142 0.858 13 C -0.186 4.186 14 N -0.464 5.464 15 Si 0.771 3.229 16 H -0.181 1.181 17 H -0.197 1.197 18 H -0.197 1.197 19 N -0.217 5.217 20 C 0.046 3.954 21 Cl -0.024 7.024 22 H 0.071 0.929 23 H 0.069 0.931 24 H 0.071 0.929 25 H 0.089 0.911 26 H 0.087 0.913 27 H 0.235 0.765 28 H 0.225 0.775 29 H 0.286 0.714 30 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.921 -8.276 0.705 8.805 hybrid contribution 0.170 0.407 -0.238 0.501 sum -2.752 -7.869 0.467 8.349 Atomic orbital electron populations 1.21725 0.95755 1.00656 1.01906 1.19987 0.95245 0.90710 1.02189 1.20520 1.16377 0.98911 0.86545 1.67444 1.03408 1.06536 1.28310 1.20023 1.22428 0.93728 0.91894 1.17608 0.75677 0.85341 0.83390 1.43457 1.74196 1.15709 1.07580 1.90516 1.50728 1.16028 1.86172 1.18168 1.02141 0.87872 0.87348 1.42402 1.42900 1.06839 1.12780 1.20581 1.36675 0.96060 0.88076 0.85798 1.25876 0.95823 0.96576 1.00303 1.69775 1.37432 1.12341 1.26827 0.85514 0.78618 0.79162 0.79619 1.18078 1.19700 1.19708 1.67013 1.18050 1.07752 1.28835 1.22310 0.95842 0.90670 0.86580 1.98333 1.93843 1.75853 1.34365 0.92946 0.93105 0.92877 0.91120 0.91292 0.76471 0.77509 0.71432 0.90112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.89 37.16 0.37 -1.47 16 2 C -0.04 -0.61 5.84 -27.88 -0.16 -0.78 16 3 C -0.07 -1.35 6.05 -82.34 -0.50 -1.84 16 4 N -0.34 -6.75 9.63 -5.69 -0.05 -6.81 16 5 C -0.13 -2.87 6.77 -82.62 -0.56 -3.43 16 6 C 0.59 12.50 8.06 -12.40 -0.10 12.40 16 7 N -0.85 -13.09 8.86 30.50 0.27 -12.81 16 8 O -0.56 -13.64 14.48 5.31 0.08 -13.57 16 9 C 0.30 7.35 7.43 -154.84 -1.15 6.20 16 10 N -0.44 -11.74 5.29 -10.89 -0.06 -11.80 16 11 C -0.28 -7.36 9.70 -15.06 -0.15 -7.51 16 12 H 0.12 3.21 7.10 -52.49 -0.37 2.84 16 13 C 0.03 0.64 5.50 -17.45 -0.10 0.54 16 14 N -0.83 -21.75 13.05 55.49 0.72 -21.03 16 15 Si 0.95 18.91 29.55 -169.99 -5.02 13.89 16 16 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 17 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 18 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 19 N -0.49 -11.72 9.25 -9.08 -0.08 -11.81 16 20 C 0.23 4.76 7.29 -17.13 -0.12 4.64 16 21 Cl -0.05 -0.87 27.45 -51.86 -1.42 -2.29 16 22 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.07 0.94 6.89 -51.93 -0.36 0.59 16 26 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.41 5.49 8.19 -40.82 -0.33 5.15 16 28 H 0.40 5.13 8.93 -40.82 -0.36 4.76 16 29 H 0.43 11.94 4.39 -40.96 -0.18 11.76 16 30 H 0.29 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 281.78 15.07 4.25 4.25 Total: -1.00 -28.70 281.78 -6.23 -34.93 By element: Atomic # 1 Polarization: 20.73 SS G_CDS: -2.43 Total: 18.30 kcal Atomic # 6 Polarization: 11.22 SS G_CDS: -2.47 Total: 8.76 kcal Atomic # 7 Polarization: -65.06 SS G_CDS: 0.80 Total: -64.26 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: 0.08 Total: -13.57 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.02 Total: 13.89 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -1.42 Total: -2.29 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -28.70 -6.23 -34.93 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163182157.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.286 kcal (2) G-P(sol) polarization free energy of solvation -28.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds