Wall clock time and date at job start Mon Mar 30 2020 01:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47364 * 2 1 4 4 N 1.31709 * 119.83035 * 89.99996 * 3 2 1 5 5 C 1.33019 * 120.02586 * 180.02562 * 4 3 2 6 6 C 1.47703 * 120.15160 * 180.02562 * 5 4 3 7 7 N 1.34773 * 119.99638 * 5.50222 * 6 5 4 8 8 O 1.21569 * 119.99995 * 185.49826 * 6 5 4 9 9 C 1.40530 * 119.70009 * 359.97438 * 5 4 3 10 10 N 1.38227 * 120.16454 * 180.02562 * 9 5 4 11 11 C 1.36886 * 120.00009 * 174.63320 * 10 9 5 12 12 H 1.07999 * 120.00395 * 359.97438 * 11 10 9 13 13 C 1.38879 * 119.99638 * 179.72165 * 11 10 9 14 14 N 1.31511 * 120.00023 * 0.27785 * 13 11 10 15 15 Si 1.86803 * 119.99804 * 180.27336 * 13 11 10 16 16 H 1.48504 * 109.47197 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.46995 * 120.00061 * 15 13 11 18 18 H 1.48496 * 109.47050 * 240.00225 * 15 13 11 19 19 N 1.32865 * 119.67386 * 0.27506 * 9 5 4 20 20 C 1.32107 * 119.96697 * 359.43067 * 19 9 5 21 21 Cl 1.73600 * 119.84802 * 180.27452 * 20 19 9 22 22 H 1.09006 * 109.47004 * 59.99573 * 1 2 3 23 23 H 1.08999 * 109.47487 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47006 * 299.99736 * 1 2 3 25 25 H 1.09005 * 109.46936 * 240.00781 * 2 1 3 26 26 H 1.08994 * 109.47349 * 120.00671 * 2 1 3 27 27 H 0.97001 * 120.00191 * 359.97438 * 7 6 5 28 28 H 0.96997 * 120.00146 * 179.97438 * 7 6 5 29 29 H 0.96998 * 119.99498 * 354.62591 * 10 9 5 30 30 H 0.97002 * 119.99537 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2508 2.0385 1.1426 5 6 2.6937 3.2928 1.1471 6 6 2.9402 3.9879 2.4268 7 7 2.8232 3.3185 3.5907 8 8 3.2485 5.1638 2.4302 9 6 2.9273 3.9531 -0.0712 10 7 3.3881 5.2563 -0.0777 11 6 3.7189 5.8594 -1.2611 12 1 3.6203 5.3169 -2.1898 13 6 4.1764 7.1706 -1.2681 14 7 4.2969 7.8311 -0.1373 15 14 4.6207 7.9962 -2.8839 16 1 4.3975 7.0460 -4.0031 17 1 3.7683 9.1968 -3.0770 18 1 6.0488 8.4023 -2.8560 19 7 2.6982 3.3203 -1.2168 20 6 2.2638 2.0728 -1.2062 21 17 1.9723 1.2466 -2.7049 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5137 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 2.5769 2.3802 3.5879 28 1 2.9854 3.7748 4.4311 29 1 3.4768 5.7434 0.7564 30 1 4.6168 8.7468 -0.1422 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163182157.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:09 Heat of formation + Delta-G solvation = -27.489833 kcal Electronic energy + Delta-G solvation = -18346.793559 eV Core-core repulsion = 15201.663074 eV Total energy + Delta-G solvation = -3145.130486 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.062 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.97958 -40.00122 -38.04464 -37.55116 -35.40621 -34.81634 -33.83870 -33.51324 -29.98733 -27.18950 -26.25772 -24.70803 -22.97362 -21.80183 -20.40745 -18.97349 -18.75689 -18.48431 -17.14370 -16.65975 -16.49916 -16.08254 -15.52904 -15.50074 -15.28617 -14.66313 -14.52856 -13.80639 -13.70996 -13.23150 -12.93461 -12.89105 -12.52972 -12.43831 -12.23427 -12.17499 -12.11282 -11.63670 -11.44830 -11.21397 -10.73208 -10.67919 -9.99377 -9.07086 -8.80773 -6.02613 -0.34919 0.48374 0.73833 1.34730 1.41772 1.52840 1.79177 2.11208 2.57876 2.66284 2.92766 3.13830 3.38731 3.77122 4.05033 4.25830 4.31219 4.61534 4.68442 4.88931 5.11837 5.20928 5.34138 5.41173 5.51429 5.62379 5.92413 6.29194 6.42082 6.50282 6.86043 7.02671 7.34553 7.53197 8.32170 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.017252 B = 0.007382 C = 0.005272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.567024 B = 3792.091442 C = 5310.162231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.044 4.044 3 C -0.048 4.048 4 N -0.331 5.331 5 C -0.142 4.142 6 C 0.586 3.414 7 N -0.814 5.814 8 O -0.592 6.592 9 C 0.300 3.700 10 N -0.480 5.480 11 C -0.320 4.320 12 H 0.115 0.885 13 C -0.016 4.016 14 N -0.886 5.886 15 Si 1.016 2.984 16 H -0.255 1.255 17 H -0.265 1.265 18 H -0.265 1.265 19 N -0.525 5.525 20 C 0.223 3.777 21 Cl -0.013 7.013 22 H 0.043 0.957 23 H 0.084 0.916 24 H 0.045 0.955 25 H 0.087 0.913 26 H 0.090 0.910 27 H 0.419 0.581 28 H 0.412 0.588 29 H 0.425 0.575 30 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.360 -12.867 0.744 13.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.083 4.083 3 C -0.201 4.201 4 N -0.047 5.047 5 C -0.292 4.292 6 C 0.374 3.626 7 N -0.377 5.377 8 O -0.473 6.473 9 C 0.050 3.950 10 N -0.090 5.090 11 C -0.451 4.451 12 H 0.132 0.868 13 C -0.222 4.222 14 N -0.518 5.518 15 Si 0.835 3.165 16 H -0.179 1.179 17 H -0.190 1.190 18 H -0.189 1.189 19 N -0.250 5.250 20 C 0.038 3.962 21 Cl 0.016 6.984 22 H 0.063 0.937 23 H 0.103 0.897 24 H 0.064 0.936 25 H 0.106 0.894 26 H 0.108 0.892 27 H 0.251 0.749 28 H 0.244 0.756 29 H 0.275 0.725 30 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.947 -11.478 0.571 12.151 hybrid contribution 0.264 0.778 -0.110 0.829 sum -3.684 -10.700 0.461 11.326 Atomic orbital electron populations 1.21700 0.94090 1.02735 1.01209 1.20228 0.96495 0.87411 1.04143 1.21543 1.12280 1.00562 0.85707 1.67615 1.03337 1.05232 1.28550 1.20340 1.22269 0.94582 0.92024 1.17599 0.75733 0.84916 0.84391 1.43153 1.71873 1.16083 1.06613 1.90521 1.52443 1.17734 1.86651 1.18764 0.99793 0.87780 0.88646 1.42382 1.46555 1.07601 1.12423 1.20587 1.39642 0.97075 0.87803 0.86777 1.26774 0.95292 0.96551 1.03555 1.69859 1.40348 1.12861 1.28759 0.84553 0.78533 0.77999 0.75385 1.17888 1.19014 1.18946 1.67101 1.19556 1.09363 1.28964 1.22922 0.94230 0.89995 0.89010 1.98347 1.93370 1.74613 1.32107 0.93739 0.89741 0.93557 0.89416 0.89193 0.74879 0.75598 0.72472 0.89921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 9.89 71.98 0.71 -2.26 16 2 C -0.04 -1.07 5.84 29.85 0.17 -0.90 16 3 C -0.05 -1.66 6.05 42.77 0.26 -1.40 16 4 N -0.33 -12.37 9.63 -171.91 -1.66 -14.02 16 5 C -0.14 -6.29 6.77 42.03 0.28 -6.01 16 6 C 0.59 24.72 8.06 86.75 0.70 25.42 16 7 N -0.81 -23.64 8.86 -175.70 -1.56 -25.19 16 8 O -0.59 -29.98 14.48 -3.93 -0.06 -30.03 16 9 C 0.30 15.24 7.43 133.53 0.99 16.23 16 10 N -0.48 -26.83 5.29 -188.36 -1.00 -27.82 16 11 C -0.32 -17.73 9.70 84.06 0.82 -16.91 16 12 H 0.11 6.26 7.10 -2.91 -0.02 6.24 16 13 C -0.02 -0.86 5.50 84.89 0.47 -0.40 16 14 N -0.89 -49.03 13.05 21.66 0.28 -48.74 16 15 Si 1.02 40.40 29.55 68.60 2.03 42.43 16 16 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 17 H -0.27 -10.11 7.11 99.48 0.71 -9.40 16 18 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 19 N -0.53 -25.04 9.25 -182.63 -1.69 -26.73 16 20 C 0.22 8.69 7.29 84.85 0.62 9.31 16 21 Cl -0.01 -0.38 27.45 -2.72 -0.07 -0.46 16 22 H 0.04 1.02 8.14 -2.38 -0.02 1.00 16 23 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.09 1.89 6.89 -2.38 -0.02 1.88 16 26 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.42 10.11 8.19 -92.71 -0.76 9.36 16 28 H 0.41 9.85 8.93 -92.71 -0.83 9.02 16 29 H 0.42 24.85 4.39 -94.96 -0.42 24.43 16 30 H 0.29 14.64 8.31 -92.71 -0.77 13.87 16 Total: -1.00 -65.88 281.78 0.53 -65.34 By element: Atomic # 1 Polarization: 42.90 SS G_CDS: -0.77 Total: 42.13 kcal Atomic # 6 Polarization: 18.08 SS G_CDS: 5.02 Total: 23.10 kcal Atomic # 7 Polarization: -136.89 SS G_CDS: -5.61 Total: -142.51 kcal Atomic # 8 Polarization: -29.98 SS G_CDS: -0.06 Total: -30.03 kcal Atomic # 14 Polarization: 40.40 SS G_CDS: 2.03 Total: 42.43 kcal Atomic # 17 Polarization: -0.38 SS G_CDS: -0.07 Total: -0.46 kcal Total: -65.88 0.53 -65.34 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163182157.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.855 kcal (2) G-P(sol) polarization free energy of solvation -65.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds