Wall clock time and date at job start Mon Mar 30 2020 01:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.45205 * 109.47416 * 2 1 4 4 C 1.34779 * 117.00394 * 180.02562 * 3 2 1 5 5 O 1.21534 * 120.00084 * 359.97438 * 4 3 2 6 6 C 1.47224 * 119.99924 * 180.02562 * 4 3 2 7 7 C 1.40194 * 120.63526 * 89.97438 * 6 4 3 8 8 Cl 1.73602 * 120.83832 * 0.03753 * 7 6 4 9 9 C 1.38527 * 118.32899 * 180.02562 * 7 6 4 10 10 C 1.38376 * 119.50152 * 359.97438 * 9 7 6 11 11 N 1.31816 * 121.26461 * 359.73290 * 10 9 7 12 12 C 1.32488 * 121.82312 * 0.56123 * 11 10 9 13 13 N 1.38185 * 119.82567 * 179.71311 * 12 11 10 14 14 C 1.36878 * 120.00357 * 359.72932 * 13 12 11 15 15 H 1.08000 * 120.00353 * 0.02562 * 14 13 12 16 16 C 1.38885 * 120.00379 * 179.97438 * 14 13 12 17 17 N 1.31509 * 120.00271 * 179.72270 * 16 14 13 18 18 Si 1.86803 * 119.99585 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47085 * 89.99641 * 18 16 14 20 20 H 1.48497 * 109.46789 * 209.99651 * 18 16 14 21 21 H 1.48490 * 109.47245 * 329.99800 * 18 16 14 22 22 H 1.08997 * 109.47470 * 300.00133 * 1 2 3 23 23 H 1.08999 * 109.47102 * 60.00202 * 1 2 3 24 24 H 1.09003 * 109.47391 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47470 * 239.99867 * 2 1 3 26 26 H 1.09004 * 109.47110 * 119.99332 * 2 1 3 27 27 H 1.08004 * 120.25383 * 180.02562 * 9 7 6 28 28 H 1.08001 * 119.36390 * 180.02562 * 10 9 7 29 29 H 0.97005 * 119.99687 * 179.72961 * 13 12 11 30 30 H 0.97000 * 119.99678 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3502 1.5456 -0.0005 5 8 4.0905 0.5818 -0.0005 6 6 3.9129 2.9061 0.0000 7 6 4.1860 3.5657 1.2065 8 17 3.8701 2.7986 2.7315 9 6 4.7145 4.8450 1.1513 10 6 4.9561 5.4299 -0.0793 11 7 4.6978 4.7910 -1.2029 12 6 4.1869 3.5687 -1.2100 13 7 3.9268 2.9394 -2.4125 14 6 4.1918 3.5811 -3.5921 15 1 4.6046 4.5790 -3.5832 16 6 3.9309 2.9484 -4.8007 17 7 4.1804 3.5670 -5.9341 18 14 3.2175 1.2220 -4.8162 19 1 1.7345 1.2993 -4.8207 20 1 3.6797 0.5065 -6.0326 21 1 3.6712 0.4881 -3.6077 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5137 0.8901 27 1 4.9370 5.3816 2.0618 28 1 5.3686 6.4272 -0.1197 29 1 3.5563 2.0429 -2.4206 30 1 3.9978 3.1253 -6.7781 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163187154.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:34 Heat of formation + Delta-G solvation = -69.462170 kcal Electronic energy + Delta-G solvation = -18439.046506 eV Core-core repulsion = 15259.803213 eV Total energy + Delta-G solvation = -3179.243294 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.91126 -40.59435 -38.01373 -37.71436 -37.20041 -34.31892 -33.41810 -32.45845 -31.09462 -26.86278 -26.21418 -24.02529 -23.26463 -22.38642 -20.64144 -19.21120 -18.85218 -17.99874 -17.94102 -17.09592 -16.42384 -16.21961 -15.51399 -15.14619 -15.07534 -14.88765 -14.52637 -14.19855 -13.78578 -13.67376 -13.64744 -13.12978 -12.99836 -12.66155 -12.60271 -12.24493 -12.21204 -12.16079 -11.82832 -11.63064 -10.93129 -10.49818 -10.31108 -9.22211 -8.60786 -5.99647 -0.03142 0.38613 0.78539 0.87072 1.15129 1.19121 1.21293 1.62733 2.01337 2.49386 2.63438 3.11372 3.62215 3.83253 3.90629 3.99636 4.10138 4.22097 4.27392 4.46111 4.71085 4.78223 4.85261 4.99594 5.08435 5.27405 5.31255 5.50670 5.92986 6.33428 6.50112 6.78862 7.03264 7.44984 8.53280 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.015815 B = 0.008731 C = 0.006023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.004780 B = 3206.039353 C = 4647.365751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.042 3.958 3 O -0.355 6.355 4 C 0.534 3.466 5 O -0.524 6.524 6 C -0.304 4.304 7 C 0.094 3.906 8 Cl -0.048 7.048 9 C -0.261 4.261 10 C 0.197 3.803 11 N -0.559 5.559 12 C 0.397 3.603 13 N -0.558 5.558 14 C -0.305 4.305 15 H 0.105 0.895 16 C 0.001 3.999 17 N -0.902 5.902 18 Si 0.926 3.074 19 H -0.249 1.249 20 H -0.257 1.257 21 H -0.268 1.268 22 H 0.074 0.926 23 H 0.062 0.938 24 H 0.109 0.891 25 H 0.062 0.938 26 H 0.079 0.921 27 H 0.178 0.822 28 H 0.203 0.797 29 H 0.385 0.615 30 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.465 -3.152 14.262 15.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.031 4.031 3 O -0.272 6.272 4 C 0.377 3.623 5 O -0.413 6.413 6 C -0.317 4.317 7 C 0.060 3.940 8 Cl -0.019 7.019 9 C -0.286 4.286 10 C 0.031 3.969 11 N -0.277 5.277 12 C 0.154 3.846 13 N -0.166 5.166 14 C -0.434 4.434 15 H 0.123 0.877 16 C -0.201 4.201 17 N -0.539 5.539 18 Si 0.748 3.252 19 H -0.172 1.172 20 H -0.181 1.181 21 H -0.194 1.194 22 H 0.093 0.907 23 H 0.081 0.919 24 H 0.127 0.873 25 H 0.081 0.919 26 H 0.098 0.902 27 H 0.195 0.805 28 H 0.219 0.781 29 H 0.220 0.780 30 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.172 -3.187 12.974 14.325 hybrid contribution -0.382 -1.710 0.355 1.788 sum -5.554 -4.896 13.328 15.247 Atomic orbital electron populations 1.21844 0.89738 1.04791 1.03783 1.23478 0.97774 0.79097 1.02765 1.86737 1.23124 1.34057 1.83237 1.20974 0.80956 0.89391 0.70968 1.90791 1.61173 1.43237 1.46089 1.18745 1.22720 0.96459 0.93738 1.20929 0.95280 0.93302 0.84479 1.98357 1.93818 1.81372 1.28384 1.21751 1.11363 0.94150 1.01332 1.23325 0.88936 0.99280 0.85370 1.67374 1.19809 1.07909 1.32645 1.17891 0.93520 0.89483 0.83691 1.41001 1.56940 1.15138 1.03490 1.19443 1.40105 1.02085 0.81767 0.87716 1.25721 0.97714 1.02303 0.94391 1.69733 1.46410 1.39506 0.98202 0.85891 0.80599 0.79357 0.79368 1.17249 1.18079 1.19351 0.90651 0.91892 0.87288 0.91937 0.90235 0.80454 0.78083 0.77962 0.90525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 10.29 71.98 0.74 -2.09 16 2 C 0.04 1.16 6.20 71.98 0.45 1.61 16 3 O -0.36 -12.82 10.23 -56.91 -0.58 -13.40 16 4 C 0.53 21.85 5.32 70.18 0.37 22.23 16 5 O -0.52 -23.19 16.90 19.73 0.33 -22.86 16 6 C -0.30 -12.55 5.79 -19.85 -0.11 -12.66 16 7 C 0.09 3.22 6.40 22.81 0.15 3.36 16 8 Cl -0.05 -1.40 28.20 -2.72 -0.08 -1.48 16 9 C -0.26 -7.36 9.91 22.37 0.22 -7.14 16 10 C 0.20 6.16 11.16 84.73 0.95 7.11 16 11 N -0.56 -24.08 9.07 -192.45 -1.74 -25.82 16 12 C 0.40 18.32 7.45 133.69 1.00 19.31 16 13 N -0.56 -28.01 5.14 -188.55 -0.97 -28.98 16 14 C -0.30 -16.92 10.18 84.06 0.86 -16.07 16 15 H 0.11 6.36 7.30 -2.91 -0.02 6.34 16 16 C 0.00 0.07 5.50 84.90 0.47 0.54 16 17 N -0.90 -51.18 13.96 21.66 0.30 -50.87 16 18 Si 0.93 40.49 27.74 68.60 1.90 42.39 16 19 H -0.25 -10.19 7.11 99.48 0.71 -9.49 16 20 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 21 H -0.27 -11.64 6.52 99.48 0.65 -11.00 16 22 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 23 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 27 H 0.18 3.48 8.06 -2.91 -0.02 3.46 16 28 H 0.20 4.34 8.06 -2.91 -0.02 4.31 16 29 H 0.38 18.64 4.58 -92.70 -0.43 18.22 16 30 H 0.28 14.83 8.31 -92.71 -0.77 14.06 16 Total: -1.00 -66.02 287.17 4.94 -61.07 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: 0.70 Total: 23.75 kcal Atomic # 6 Polarization: 11.12 SS G_CDS: 5.08 Total: 16.20 kcal Atomic # 7 Polarization: -103.26 SS G_CDS: -2.41 Total: -105.68 kcal Atomic # 8 Polarization: -36.01 SS G_CDS: -0.25 Total: -36.25 kcal Atomic # 14 Polarization: 40.49 SS G_CDS: 1.90 Total: 42.39 kcal Atomic # 17 Polarization: -1.40 SS G_CDS: -0.08 Total: -1.48 kcal Total: -66.02 4.94 -61.07 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163187154.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.388 kcal (2) G-P(sol) polarization free energy of solvation -66.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds