Wall clock time and date at job start Mon Mar 30 2020 01:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 F 1.39895 * 113.25352 * 2 1 4 4 C 1.53512 * 114.16681 * 227.04875 * 2 1 3 5 5 N 1.47482 * 87.92626 * 220.13809 * 4 2 1 6 6 C 1.38410 * 110.99671 * 138.70933 * 5 4 2 7 7 N 1.32752 * 119.43564 * 359.97438 * 6 5 4 8 8 C 1.31476 * 121.73870 * 179.97438 * 7 6 5 9 9 C 1.40796 * 120.38830 * 359.97438 * 8 7 6 10 10 C 1.41188 * 120.56357 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00065 * 23.65170 * 10 9 8 12 12 C 1.39865 * 120.00146 * 203.65610 * 10 9 8 13 13 N 1.30911 * 119.99878 * 17.64850 * 12 10 9 14 14 Si 1.86794 * 120.00246 * 197.64790 * 12 10 9 15 15 H 1.48504 * 109.46983 * 90.00005 * 14 12 10 16 16 H 1.48501 * 109.47524 * 209.99897 * 14 12 10 17 17 H 1.48503 * 109.47271 * 329.99958 * 14 12 10 18 18 C 1.41281 * 118.86964 * 0.02562 * 9 8 7 19 19 C 1.36673 * 118.40383 * 359.97438 * 18 9 8 20 20 Cl 1.73593 * 120.26406 * 179.97438 * 19 18 9 21 21 C 1.47475 * 87.83942 * 27.01140 * 5 4 2 22 22 H 1.08997 * 109.46978 * 192.95586 * 1 2 3 23 23 H 1.09004 * 109.46828 * 312.94647 * 1 2 3 24 24 H 1.08992 * 109.47319 * 72.95190 * 1 2 3 25 25 H 1.08994 * 113.47524 * 105.37278 * 4 2 1 26 26 H 1.08998 * 113.47927 * 334.90352 * 4 2 1 27 27 H 1.07996 * 119.80298 * 179.72118 * 8 7 6 28 28 H 0.96994 * 119.99814 * 180.02562 * 13 12 10 29 29 H 1.07998 * 120.80063 * 180.02562 * 18 9 8 30 30 H 1.09005 * 113.47222 * 87.75445 * 21 5 4 31 31 H 1.08993 * 113.47909 * 218.22097 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 9 2.0824 1.2853 0.0000 4 6 2.1586 -0.9543 -1.0251 5 7 3.1647 -1.3022 -0.0045 6 6 3.4233 -2.6620 -0.0063 7 7 2.7828 -3.4467 -0.8643 8 6 2.9938 -4.7438 -0.9055 9 6 3.9180 -5.3433 -0.0287 10 6 4.1470 -6.7359 -0.0694 11 1 3.9366 -7.2916 -0.9712 12 6 4.6463 -7.3958 1.0582 13 7 4.5792 -6.8244 2.2342 14 14 5.4087 -9.0923 0.8864 15 1 6.8648 -8.9568 0.6280 16 1 5.1978 -9.8592 2.1404 17 1 4.7697 -9.8098 -0.2460 18 6 4.6114 -4.5278 0.8933 19 6 4.3551 -3.1853 0.8948 20 17 5.1793 -2.1385 2.0077 21 6 2.1628 -0.9560 1.0208 22 1 -0.3633 -1.0015 0.2304 23 1 -0.3633 0.7002 0.7523 24 1 -0.3633 0.3013 -0.9824 25 1 2.5781 -0.4448 -1.8925 26 1 1.5103 -1.7872 -1.2975 27 1 2.4520 -5.3535 -1.6134 28 1 4.9258 -7.2818 3.0161 29 1 5.3274 -4.9548 1.5799 30 1 1.5157 -1.7895 1.2944 31 1 2.5860 -0.4480 1.8873 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164591511.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:13 Heat of formation + Delta-G solvation = -1.984160 kcal Electronic energy + Delta-G solvation = -18305.220754 eV Core-core repulsion = 15141.276315 eV Total energy + Delta-G solvation = -3163.944438 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.063 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.66993 -41.63297 -39.36730 -37.26063 -35.99513 -33.03238 -32.46745 -30.93557 -27.99695 -27.24327 -25.57363 -23.66937 -22.55871 -20.79049 -19.45761 -18.27002 -17.64561 -17.12778 -16.95718 -16.33277 -16.02399 -15.79307 -15.27960 -14.84442 -14.44152 -14.12417 -14.05395 -13.70210 -13.45492 -13.32853 -13.14442 -12.97160 -12.87090 -12.60688 -12.45406 -12.00773 -11.86535 -11.59796 -11.27953 -11.22627 -10.68064 -10.13129 -10.10616 -9.23331 -8.79861 -6.49704 0.47187 0.79625 1.39928 1.41995 1.48505 1.54168 2.14735 2.50978 2.87819 2.98142 3.39534 3.46407 3.66337 4.02121 4.06995 4.38857 4.54171 4.57456 4.63536 4.68095 4.77894 4.80940 4.96432 5.05654 5.13498 5.16039 5.23681 5.30620 5.68388 5.77881 6.15592 6.39221 6.62733 6.63821 7.40486 8.12737 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.032513 B = 0.005406 C = 0.004898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.986711 B = 5178.164294 C = 5715.412898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.093 3.907 3 F -0.195 7.195 4 C -0.001 4.001 5 N -0.419 5.419 6 C 0.114 3.886 7 N -0.469 5.469 8 C -0.016 4.016 9 C 0.044 3.956 10 C -0.458 4.458 11 H 0.099 0.901 12 C 0.035 3.965 13 N -0.808 5.808 14 Si 0.989 3.011 15 H -0.264 1.264 16 H -0.268 1.268 17 H -0.250 1.250 18 C -0.144 4.144 19 C -0.037 4.037 20 Cl -0.082 7.082 21 C -0.006 4.006 22 H 0.083 0.917 23 H 0.083 0.917 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.109 0.891 27 H 0.154 0.846 28 H 0.296 0.704 29 H 0.126 0.874 30 H 0.081 0.919 31 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.850 4.389 -1.050 6.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.074 3.926 3 F -0.175 7.175 4 C -0.130 4.130 5 N -0.139 5.139 6 C -0.116 4.116 7 N -0.180 5.180 8 C -0.180 4.180 9 C 0.039 3.961 10 C -0.487 4.487 11 H 0.117 0.883 12 C -0.183 4.183 13 N -0.432 5.432 14 Si 0.809 3.191 15 H -0.188 1.188 16 H -0.193 1.193 17 H -0.174 1.174 18 C -0.171 4.171 19 C -0.068 4.068 20 Cl -0.054 7.054 21 C -0.134 4.134 22 H 0.102 0.898 23 H 0.102 0.898 24 H 0.106 0.894 25 H 0.105 0.895 26 H 0.127 0.873 27 H 0.171 0.829 28 H 0.107 0.893 29 H 0.144 0.856 30 H 0.099 0.901 31 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.632 5.174 -1.240 7.055 hybrid contribution 0.751 -1.362 0.894 1.794 sum -3.881 3.812 -0.347 5.451 Atomic orbital electron populations 1.22073 0.89169 1.04600 1.04867 1.21948 0.95162 0.78043 0.97404 1.92812 1.87619 1.40098 1.97001 1.24339 0.94169 0.98280 0.96186 1.66564 1.29866 1.11349 1.06079 1.19333 1.01817 0.91026 0.99403 1.67031 1.23318 1.06722 1.20886 1.22717 1.01149 0.89632 1.04472 1.18765 0.90579 0.95195 0.91587 1.19901 1.36673 0.92363 0.99740 0.88332 1.26920 0.93053 1.04713 0.93600 1.69850 1.32229 1.40716 1.00442 0.85066 0.79061 0.75523 0.79432 1.18843 1.19301 1.17359 1.21307 1.02353 0.90098 1.03315 1.21133 0.98493 0.91544 0.95610 1.98256 1.78058 1.67364 1.61679 1.24484 0.93574 0.98340 0.97033 0.89842 0.89806 0.89450 0.89508 0.87275 0.82876 0.89301 0.85628 0.90074 0.89223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.06 9.67 71.98 0.70 -2.36 16 2 C 0.09 2.69 2.38 -10.45 -0.02 2.66 16 3 F -0.19 -6.19 17.31 44.97 0.78 -5.41 16 4 C 0.00 -0.03 6.86 83.58 0.57 0.54 16 5 N -0.42 -16.59 5.81 -731.48 -4.25 -20.85 16 6 C 0.11 5.13 5.85 133.32 0.78 5.91 16 7 N -0.47 -21.11 8.14 -191.07 -1.56 -22.66 16 8 C -0.02 -0.76 10.97 85.37 0.94 0.18 16 9 C 0.04 2.18 5.59 -21.18 -0.12 2.07 16 10 C -0.46 -21.83 9.06 23.39 0.21 -21.62 16 11 H 0.10 4.36 7.90 -2.91 -0.02 4.33 16 12 C 0.04 1.58 5.17 85.22 0.44 2.02 16 13 N -0.81 -38.51 10.92 21.82 0.24 -38.27 16 14 Si 0.99 33.95 29.59 68.60 2.03 35.98 16 15 H -0.26 -8.98 7.11 99.48 0.71 -8.27 16 16 H -0.27 -8.87 7.11 99.48 0.71 -8.16 16 17 H -0.25 -8.20 7.11 99.48 0.71 -7.49 16 18 C -0.14 -7.27 8.52 22.65 0.19 -7.08 16 19 C -0.04 -1.77 6.29 22.28 0.14 -1.63 16 20 Cl -0.08 -3.43 28.22 -2.72 -0.08 -3.50 16 21 C -0.01 -0.21 6.90 83.58 0.58 0.37 16 22 H 0.08 1.65 7.91 -2.39 -0.02 1.63 16 23 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 24 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 26 H 0.11 3.70 6.60 -2.39 -0.02 3.68 16 27 H 0.15 6.30 8.06 -2.91 -0.02 6.28 16 28 H 0.30 12.71 8.30 -92.71 -0.77 11.94 16 29 H 0.13 6.58 6.19 -2.91 -0.02 6.56 16 30 H 0.08 2.77 7.70 -2.38 -0.02 2.76 16 31 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 Total: -1.00 -54.37 283.82 2.72 -51.65 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: 1.16 Total: 22.01 kcal Atomic # 6 Polarization: -23.35 SS G_CDS: 4.41 Total: -18.94 kcal Atomic # 7 Polarization: -76.21 SS G_CDS: -5.57 Total: -81.78 kcal Atomic # 9 Polarization: -6.19 SS G_CDS: 0.78 Total: -5.41 kcal Atomic # 14 Polarization: 33.95 SS G_CDS: 2.03 Total: 35.98 kcal Atomic # 17 Polarization: -3.43 SS G_CDS: -0.08 Total: -3.50 kcal Total: -54.37 2.72 -51.65 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164591511.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.662 kcal (2) G-P(sol) polarization free energy of solvation -54.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds