Wall clock time and date at job start Mon Mar 30 2020 01:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34679 * 117.00342 * 2 1 4 4 O 1.21432 * 119.99730 * 0.02562 * 3 2 1 5 5 C 1.48061 * 120.00578 * 180.27219 * 3 2 1 6 6 C 1.39209 * 119.67728 * 179.45075 * 5 3 2 7 7 C 1.38940 * 119.21695 * 179.79751 * 6 5 3 8 8 Cl 1.73598 * 120.72278 * 180.22680 * 7 6 5 9 9 C 1.38442 * 118.55491 * 0.47358 * 7 6 5 10 10 C 1.39486 * 119.27571 * 359.75463 * 9 7 6 11 11 N 1.38854 * 119.63268 * 179.97438 * 10 9 7 12 12 C 1.46498 * 120.00096 * 185.01960 * 11 10 9 13 13 C 1.36919 * 119.99693 * 5.01825 * 11 10 9 14 14 H 1.07995 * 120.00308 * 24.33983 * 13 11 10 15 15 C 1.38822 * 119.99814 * 204.33578 * 13 11 10 16 16 N 1.31560 * 119.99651 * 10.44155 * 15 13 11 17 17 Si 1.86800 * 119.99857 * 190.43793 * 15 13 11 18 18 H 1.48493 * 109.47405 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.46633 * 120.00474 * 17 15 13 20 20 H 1.48503 * 109.46881 * 240.00182 * 17 15 13 21 21 N 1.32175 * 120.73716 * 0.02562 * 10 9 7 22 22 H 1.09004 * 109.47382 * 60.00020 * 1 2 3 23 23 H 1.09007 * 109.47201 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47118 * 299.99352 * 1 2 3 25 25 H 1.08001 * 120.38975 * 0.02562 * 6 5 3 26 26 H 1.07997 * 120.36152 * 179.72577 * 9 7 6 27 27 H 1.08994 * 109.47161 * 93.54028 * 12 11 10 28 28 H 1.08994 * 109.47340 * 213.54023 * 12 11 10 29 29 H 1.09008 * 109.46990 * 333.53978 * 12 11 10 30 30 H 0.97004 * 119.99785 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2000 0.0000 4 8 1.4021 2.2184 0.0005 5 6 3.5420 1.2775 -0.0061 6 6 4.1669 2.5214 -0.0176 7 6 5.5550 2.5831 -0.0190 8 17 6.3747 4.1133 -0.0273 9 6 6.2700 1.3976 -0.0188 10 6 5.5805 0.1851 -0.0120 11 7 6.2903 -1.0083 -0.0123 12 6 5.5780 -2.2842 -0.1163 13 6 7.6560 -0.9925 0.0846 14 1 8.1553 -0.1512 0.5419 15 6 8.3989 -2.0582 -0.4051 16 7 7.8185 -2.9816 -1.1408 17 14 10.2225 -2.1808 -0.0194 18 1 10.6296 -1.0258 0.8204 19 1 10.4893 -3.4441 0.7141 20 1 10.9980 -2.1704 -1.2858 21 7 4.2590 0.1595 -0.0064 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 3.5797 3.4278 -0.0218 26 1 7.3499 1.4115 -0.0243 27 1 5.5286 -2.5886 -1.1617 28 1 6.1074 -3.0438 0.4587 29 1 4.5677 -2.1694 0.2769 30 1 8.3375 -3.7264 -1.4827 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166798964.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:25 Heat of formation + Delta-G solvation = -48.724185 kcal Electronic energy + Delta-G solvation = -18088.965449 eV Core-core repulsion = 14910.621422 eV Total energy + Delta-G solvation = -3178.344027 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.75006 -40.68200 -38.11329 -37.58216 -37.31431 -34.04964 -33.12623 -31.21439 -29.02807 -28.31767 -26.15624 -25.45620 -22.86874 -22.25751 -19.83275 -18.76498 -18.53128 -17.44135 -17.41382 -17.05696 -16.70807 -16.01269 -15.70335 -15.38224 -14.90011 -14.56767 -14.54792 -14.04993 -13.52440 -13.21685 -13.07687 -12.97905 -12.92165 -12.66962 -12.43785 -12.07404 -12.04409 -11.85390 -11.77834 -11.38963 -10.70030 -10.44282 -10.36766 -8.92141 -8.38480 -5.92331 -0.37024 0.37619 0.92666 1.35138 1.45671 1.51912 1.59061 1.70168 2.17072 2.74413 2.75292 3.15365 3.42951 4.15770 4.20597 4.24990 4.32118 4.37691 4.55283 4.71498 4.73180 4.86526 4.99579 5.10899 5.21648 5.30822 5.34561 5.44664 5.91946 6.34856 6.60018 6.95041 7.18005 7.64677 8.59207 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.017031 B = 0.006459 C = 0.004743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.645480 B = 4333.821027 C = 5901.901261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.347 6.347 3 C 0.535 3.465 4 O -0.514 6.514 5 C 0.147 3.853 6 C -0.222 4.222 7 C 0.053 3.947 8 Cl -0.045 7.045 9 C -0.218 4.218 10 C 0.352 3.648 11 N -0.428 5.428 12 C 0.141 3.859 13 C -0.333 4.333 14 H 0.107 0.893 15 C -0.005 4.005 16 N -0.891 5.891 17 Si 0.999 3.001 18 H -0.256 1.256 19 H -0.275 1.275 20 H -0.278 1.278 21 N -0.535 5.535 22 H 0.068 0.932 23 H 0.131 0.869 24 H 0.069 0.931 25 H 0.153 0.847 26 H 0.143 0.857 27 H 0.040 0.960 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.717 5.266 2.206 8.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.262 6.262 3 C 0.379 3.621 4 O -0.403 6.403 5 C 0.005 3.995 6 C -0.251 4.251 7 C 0.019 3.981 8 Cl -0.016 7.016 9 C -0.247 4.247 10 C 0.109 3.891 11 N -0.117 5.117 12 C -0.003 4.003 13 C -0.461 4.461 14 H 0.124 0.876 15 C -0.209 4.209 16 N -0.526 5.526 17 Si 0.822 3.178 18 H -0.179 1.179 19 H -0.200 1.200 20 H -0.203 1.203 21 N -0.259 5.259 22 H 0.087 0.913 23 H 0.149 0.851 24 H 0.088 0.912 25 H 0.171 0.829 26 H 0.161 0.839 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.067 4.324 2.099 7.740 hybrid contribution 1.077 0.543 -0.085 1.209 sum -4.990 4.867 2.014 7.256 Atomic orbital electron populations 1.23679 0.74099 1.05940 1.03047 1.86712 1.25332 1.31263 1.82861 1.20763 0.87658 0.81744 0.71955 1.90778 1.66114 1.36514 1.46914 1.19556 0.90260 0.89189 1.00476 1.21147 0.92625 0.97986 1.13296 1.20605 0.91869 0.86899 0.98691 1.98339 1.78683 1.27968 1.96602 1.21337 1.01617 0.89821 1.11937 1.18409 0.87102 0.87214 0.96336 1.42722 1.05308 1.01937 1.61693 1.21213 0.94178 0.84249 1.00627 1.20046 0.80162 1.08035 1.37896 0.87557 1.26334 1.04903 0.95466 0.94190 1.70196 1.38808 1.12626 1.30960 0.84761 0.75847 0.78946 0.78251 1.17941 1.20037 1.20320 1.67005 1.06378 1.30723 1.21844 0.91305 0.85117 0.91177 0.82886 0.83916 0.94104 0.93000 0.92569 0.91431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.56 113.37 1.20 1.74 16 2 O -0.35 -11.40 10.38 -55.89 -0.58 -11.98 16 3 C 0.54 19.33 7.95 70.43 0.56 19.89 16 4 O -0.51 -18.64 16.10 20.05 0.32 -18.32 16 5 C 0.15 5.84 6.74 41.84 0.28 6.12 16 6 C -0.22 -8.07 9.45 22.67 0.21 -7.86 16 7 C 0.05 1.93 6.36 22.49 0.14 2.08 16 8 Cl -0.04 -1.34 29.01 -2.72 -0.08 -1.42 16 9 C -0.22 -9.01 9.08 22.62 0.21 -8.81 16 10 C 0.35 16.21 7.34 133.27 0.98 17.19 16 11 N -0.43 -21.04 3.12 -541.25 -1.69 -22.73 16 12 C 0.14 6.66 8.78 127.77 1.12 7.78 16 13 C -0.33 -16.30 8.89 84.04 0.75 -15.56 16 14 H 0.11 4.93 6.34 -2.91 -0.02 4.91 16 15 C -0.01 -0.24 5.14 84.87 0.44 0.19 16 16 N -0.89 -44.98 10.66 21.65 0.23 -44.75 16 17 Si 1.00 37.66 29.57 68.60 2.03 39.69 16 18 H -0.26 -9.17 7.11 99.48 0.71 -8.46 16 19 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 20 H -0.28 -10.40 7.11 99.48 0.71 -9.69 16 21 N -0.54 -23.69 8.77 -182.44 -1.60 -25.29 16 22 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 23 H 0.13 1.99 8.14 -2.38 -0.02 1.97 16 24 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.15 5.02 7.63 -2.91 -0.02 5.00 16 26 H 0.14 5.80 6.28 -2.91 -0.02 5.78 16 27 H 0.04 2.05 7.41 -2.39 -0.02 2.03 16 28 H 0.05 2.49 7.25 -2.39 -0.02 2.47 16 29 H 0.06 2.50 7.19 -2.38 -0.02 2.49 16 30 H 0.28 13.05 8.31 -92.71 -0.77 12.28 16 Total: -1.00 -55.71 284.06 5.70 -50.00 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: 1.18 Total: 12.03 kcal Atomic # 6 Polarization: 16.88 SS G_CDS: 5.89 Total: 22.77 kcal Atomic # 7 Polarization: -89.71 SS G_CDS: -3.06 Total: -92.77 kcal Atomic # 8 Polarization: -30.04 SS G_CDS: -0.26 Total: -30.30 kcal Atomic # 14 Polarization: 37.66 SS G_CDS: 2.03 Total: 39.69 kcal Atomic # 17 Polarization: -1.34 SS G_CDS: -0.08 Total: -1.42 kcal Total: -55.71 5.70 -50.00 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166798964.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.280 kcal (2) G-P(sol) polarization free energy of solvation -55.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds