Wall clock time and date at job start Mon Mar 30 2020 01:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34701 * 117.00262 * 2 1 4 4 O 1.21448 * 119.99628 * 0.02562 * 3 2 1 5 5 C 1.47963 * 120.00097 * 180.27185 * 3 2 1 6 6 N 1.32875 * 119.69456 * 359.72956 * 5 3 2 7 7 C 1.32092 * 121.53917 * 179.97438 * 6 5 3 8 8 N 1.38860 * 119.62129 * 180.02562 * 7 6 5 9 9 C 1.46500 * 119.99937 * 5.00191 * 8 7 6 10 10 C 1.36912 * 120.00124 * 185.00408 * 8 7 6 11 11 H 1.07996 * 119.99884 * 24.43783 * 10 8 7 12 12 C 1.38817 * 119.99844 * 204.44242 * 10 8 7 13 13 N 1.31559 * 120.00078 * 10.47770 * 12 10 8 14 14 Si 1.86805 * 119.99969 * 190.48560 * 12 10 8 15 15 H 1.48495 * 109.46956 * 84.92445 * 14 12 10 16 16 H 1.48494 * 109.46756 * 204.92723 * 14 12 10 17 17 H 1.48503 * 109.46823 * 324.92729 * 14 12 10 18 18 C 1.39627 * 120.75743 * 359.97438 * 7 6 5 19 19 C 1.38190 * 119.31433 * 359.97438 * 18 7 6 20 20 C 1.38998 * 118.57768 * 359.75218 * 19 18 7 21 21 Cl 1.73598 * 120.40458 * 180.24612 * 20 19 18 22 22 H 1.08992 * 109.47205 * 299.99938 * 1 2 3 23 23 H 1.09001 * 109.46728 * 59.99840 * 1 2 3 24 24 H 1.08995 * 109.46982 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47442 * 94.59468 * 9 8 7 26 26 H 1.09003 * 109.47418 * 214.59668 * 9 8 7 27 27 H 1.08999 * 109.47240 * 334.59301 * 9 8 7 28 28 H 0.97006 * 120.00571 * 180.02562 * 13 12 10 29 29 H 1.08003 * 120.33936 * 179.97438 * 18 7 6 30 30 H 1.08007 * 120.71186 * 180.02562 * 19 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2002 0.0000 4 8 1.4021 2.2187 0.0005 5 6 3.5411 1.2776 -0.0061 6 7 4.2589 0.1593 -0.0061 7 6 5.5795 0.1859 -0.0119 8 7 6.2900 -1.0071 -0.0122 9 6 5.5784 -2.2834 -0.1167 10 6 7.6556 -0.9907 0.0852 11 1 8.1541 -0.1499 0.5445 12 6 8.3993 -2.0547 -0.4064 13 7 7.8200 -2.9766 -1.1449 14 14 10.2226 -2.1777 -0.0191 15 1 10.4055 -2.8409 1.2969 16 1 10.8998 -2.9746 -1.0734 17 1 10.8118 -0.8154 0.0269 18 6 6.2692 1.3999 -0.0188 19 6 5.5558 2.5834 -0.0201 20 6 4.1671 2.5227 -0.0197 21 17 3.2239 3.9800 -0.0277 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 5.5459 -2.5970 -1.1601 26 1 6.0978 -3.0384 0.4735 27 1 4.5621 -2.1646 0.2588 28 1 8.3396 -3.7204 -1.4881 29 1 7.3491 1.4138 -0.0232 30 1 6.0662 3.5352 -0.0259 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166799270.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:26 Heat of formation + Delta-G solvation = -40.286640 kcal Electronic energy + Delta-G solvation = -18229.736781 eV Core-core repulsion = 15051.758633 eV Total energy + Delta-G solvation = -3177.978148 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.67523 -40.62095 -38.09432 -37.34801 -36.99918 -33.98538 -33.40694 -30.95697 -28.99057 -28.31316 -26.12021 -25.30164 -22.91547 -22.22780 -19.76163 -18.71772 -18.44635 -17.40890 -17.38570 -16.98659 -16.95756 -16.04254 -15.67254 -15.14411 -14.74314 -14.61056 -14.09551 -13.85901 -13.58025 -13.21693 -13.00368 -12.97322 -12.75515 -12.62585 -12.48526 -12.37229 -12.07642 -11.72689 -11.29187 -11.21513 -10.66123 -10.53632 -10.25062 -8.81056 -8.35680 -5.90271 -0.33853 0.48278 1.38148 1.43170 1.46973 1.56210 1.58627 1.66434 2.19172 2.76325 2.79429 3.17991 3.44272 3.98596 4.23786 4.32117 4.33055 4.37918 4.56519 4.71796 4.78356 4.98386 5.03107 5.13519 5.25437 5.30399 5.36286 5.55720 5.93045 6.36430 6.64935 6.96310 7.19422 7.66722 8.60410 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.026152 B = 0.005584 C = 0.004660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.422844 B = 5012.815118 C = 6006.818117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.351 6.351 3 C 0.520 3.480 4 O -0.495 6.495 5 C 0.141 3.859 6 N -0.533 5.533 7 C 0.339 3.661 8 N -0.428 5.428 9 C 0.139 3.861 10 C -0.333 4.333 11 H 0.112 0.888 12 C -0.007 4.007 13 N -0.893 5.893 14 Si 1.002 2.998 15 H -0.271 1.271 16 H -0.283 1.283 17 H -0.255 1.255 18 C -0.210 4.210 19 C -0.019 4.019 20 C -0.154 4.154 21 Cl -0.051 7.051 22 H 0.068 0.932 23 H 0.066 0.934 24 H 0.129 0.871 25 H 0.041 0.959 26 H 0.049 0.951 27 H 0.054 0.946 28 H 0.275 0.725 29 H 0.150 0.850 30 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.231 5.737 2.210 8.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.267 6.267 3 C 0.363 3.637 4 O -0.382 6.382 5 C -0.001 4.001 6 N -0.257 5.257 7 C 0.097 3.903 8 N -0.117 5.117 9 C -0.005 4.005 10 C -0.461 4.461 11 H 0.130 0.870 12 C -0.211 4.211 13 N -0.528 5.528 14 Si 0.824 3.176 15 H -0.197 1.197 16 H -0.208 1.208 17 H -0.178 1.178 18 C -0.238 4.238 19 C -0.044 4.044 20 C -0.192 4.192 21 Cl -0.022 7.022 22 H 0.087 0.913 23 H 0.085 0.915 24 H 0.147 0.853 25 H 0.059 0.941 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.085 0.915 29 H 0.167 0.833 30 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -5.741 4.794 2.095 7.767 hybrid contribution 0.808 0.367 -0.070 0.890 sum -4.933 5.161 2.025 7.420 Atomic orbital electron populations 1.23616 0.74346 1.05707 1.02883 1.86705 1.25144 1.31608 1.83233 1.20897 0.87928 0.81905 0.72952 1.90861 1.66048 1.35759 1.45568 1.19488 0.90589 0.88514 1.01527 1.67108 1.06834 1.29225 1.22508 1.18781 0.87294 0.87978 0.96288 1.42745 1.05368 1.02001 1.61564 1.21209 0.94122 0.84504 1.00643 1.20064 0.80064 1.08267 1.37720 0.87049 1.26377 1.05029 0.95504 0.94175 1.70196 1.38965 1.12746 1.30898 0.84792 0.75659 0.79285 0.77821 1.19674 1.20846 1.17820 1.21621 1.01840 0.90284 1.10053 1.21288 0.90214 0.99439 0.93503 1.21145 0.92963 0.86891 1.18197 1.98311 1.72435 1.34223 1.97243 0.91345 0.91478 0.85295 0.94051 0.93208 0.92778 0.91503 0.83285 0.81005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 10.56 113.37 1.20 1.83 16 2 O -0.35 -12.19 10.38 -56.10 -0.58 -12.77 16 3 C 0.52 19.76 7.94 70.40 0.56 20.32 16 4 O -0.50 -18.64 13.71 20.00 0.27 -18.36 16 5 C 0.14 5.76 6.75 41.84 0.28 6.05 16 6 N -0.53 -23.90 8.76 -182.31 -1.60 -25.50 16 7 C 0.34 15.42 7.34 133.32 0.98 16.40 16 8 N -0.43 -20.88 3.12 -541.18 -1.69 -22.57 16 9 C 0.14 6.62 8.79 127.77 1.12 7.75 16 10 C -0.33 -15.96 8.89 84.04 0.75 -15.21 16 11 H 0.11 4.93 6.35 -2.91 -0.02 4.91 16 12 C -0.01 -0.34 5.14 84.87 0.44 0.10 16 13 N -0.89 -45.00 10.66 21.65 0.23 -44.77 16 14 Si 1.00 36.96 29.57 68.60 2.03 38.99 16 15 H -0.27 -9.85 7.11 99.48 0.71 -9.14 16 16 H -0.28 -10.47 7.11 99.48 0.71 -9.76 16 17 H -0.25 -8.81 7.11 99.48 0.71 -8.10 16 18 C -0.21 -8.17 9.27 22.59 0.21 -7.96 16 19 C -0.02 -0.65 9.96 22.44 0.22 -0.43 16 20 C -0.15 -5.69 6.37 22.72 0.14 -5.54 16 21 Cl -0.05 -1.67 26.01 -2.72 -0.07 -1.75 16 22 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 23 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 24 H 0.13 2.17 8.14 -2.39 -0.02 2.15 16 25 H 0.04 2.10 7.35 -2.39 -0.02 2.08 16 26 H 0.05 2.40 7.33 -2.39 -0.02 2.38 16 27 H 0.05 2.45 7.16 -2.39 -0.02 2.44 16 28 H 0.28 13.08 8.31 -92.70 -0.77 12.30 16 29 H 0.15 5.45 6.29 -2.91 -0.02 5.43 16 30 H 0.17 4.38 8.06 -2.91 -0.02 4.35 16 Total: -1.00 -57.16 279.79 5.68 -51.48 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: 1.18 Total: 11.95 kcal Atomic # 6 Polarization: 17.39 SS G_CDS: 5.90 Total: 23.29 kcal Atomic # 7 Polarization: -89.78 SS G_CDS: -3.05 Total: -92.84 kcal Atomic # 8 Polarization: -30.83 SS G_CDS: -0.31 Total: -31.14 kcal Atomic # 14 Polarization: 36.96 SS G_CDS: 2.03 Total: 38.99 kcal Atomic # 17 Polarization: -1.67 SS G_CDS: -0.07 Total: -1.75 kcal Total: -57.16 5.68 -51.48 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166799270.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.196 kcal (2) G-P(sol) polarization free energy of solvation -57.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds