Wall clock time and date at job start Mon Mar 30 2020 01:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34666 * 117.00214 * 2 1 4 4 O 1.21434 * 119.99876 * 0.02562 * 3 2 1 5 5 C 1.48056 * 120.00156 * 180.02562 * 3 2 1 6 6 C 1.40017 * 120.87791 * 359.97438 * 5 3 2 7 7 C 1.38226 * 119.16550 * 180.27063 * 6 5 3 8 8 Cl 1.73604 * 119.51249 * 179.72778 * 7 6 5 9 9 N 1.31933 * 120.97759 * 359.50186 * 7 6 5 10 10 C 1.32453 * 121.93434 * 0.49178 * 9 7 6 11 11 N 1.38831 * 119.63417 * 179.74785 * 10 9 7 12 12 C 1.46493 * 120.00350 * 5.02294 * 11 10 9 13 13 C 1.36887 * 119.99791 * 185.02202 * 11 10 9 14 14 H 1.07997 * 119.99769 * 24.44777 * 13 11 10 15 15 C 1.38833 * 119.99829 * 204.45139 * 13 11 10 16 16 N 1.31550 * 120.00341 * 10.48264 * 15 13 11 17 17 Si 1.86801 * 119.99666 * 190.48592 * 15 13 11 18 18 H 1.48496 * 109.47067 * 84.92971 * 17 15 13 19 19 H 1.48501 * 109.46930 * 204.92679 * 17 15 13 20 20 H 1.48493 * 109.47163 * 324.92705 * 17 15 13 21 21 C 1.39159 * 120.72384 * 359.77609 * 10 9 7 22 22 H 1.09001 * 109.46748 * 299.99955 * 1 2 3 23 23 H 1.08996 * 109.47479 * 59.99866 * 1 2 3 24 24 H 1.09000 * 109.47107 * 180.02562 * 1 2 3 25 25 H 1.08005 * 120.41875 * 359.97438 * 6 5 3 26 26 H 1.09007 * 109.47140 * 94.56816 * 12 11 10 27 27 H 1.08997 * 109.47411 * 214.56599 * 12 11 10 28 28 H 1.08998 * 109.47575 * 334.56917 * 12 11 10 29 29 H 0.96999 * 120.00246 * 179.97438 * 16 15 13 30 30 H 1.08003 * 120.52374 * 179.97438 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.1999 0.0000 4 8 1.4020 2.2183 0.0005 5 6 3.5419 1.2773 -0.0006 6 6 4.3224 0.1149 -0.0006 7 6 5.7000 0.2284 0.0046 8 17 6.6764 -1.2070 0.0118 9 7 6.2839 1.4115 -0.0004 10 6 5.5859 2.5372 -0.0008 11 7 6.2498 3.7565 -0.0007 12 6 7.7100 3.7955 -0.1114 13 6 5.5399 4.9223 0.1026 14 1 4.5644 4.9212 0.5661 15 6 6.0738 6.1060 -0.3884 16 7 7.1589 6.0798 -1.1318 17 14 5.2515 7.7361 0.0065 18 1 5.7345 8.2284 1.3216 19 1 5.5870 8.7278 -1.0468 20 1 3.7794 7.5482 0.0585 21 6 4.1946 2.5111 -0.0006 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 3.8540 -0.8583 0.0002 26 1 7.9919 3.9297 -1.1558 27 1 8.0971 4.6261 0.4789 28 1 8.1278 2.8599 0.2603 29 1 7.5317 6.9068 -1.4752 30 1 3.6287 3.4310 -0.0005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166800436.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:15 Heat of formation + Delta-G solvation = -50.875971 kcal Electronic energy + Delta-G solvation = -18070.473952 eV Core-core repulsion = 14892.036617 eV Total energy + Delta-G solvation = -3178.437336 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.75973 -40.72178 -38.13764 -37.58748 -37.20605 -34.21276 -33.43267 -30.88414 -28.97954 -28.39377 -26.32892 -25.07206 -23.58508 -21.79107 -19.90795 -18.84124 -18.44377 -17.42182 -17.37347 -17.05334 -16.47531 -16.21450 -15.85584 -15.58942 -15.02717 -14.58666 -14.49552 -14.23912 -13.49237 -13.13834 -13.07255 -12.84905 -12.70974 -12.63845 -12.37597 -12.21486 -12.11024 -11.84517 -11.81568 -11.35115 -10.94052 -10.46353 -10.42393 -8.87173 -8.40949 -5.96118 -0.35135 0.31412 0.84842 1.41015 1.41800 1.53150 1.56782 1.58742 2.16519 2.70214 2.80364 3.10960 3.61616 4.11408 4.20947 4.23951 4.35089 4.37640 4.47588 4.69641 4.75241 4.87104 4.95671 5.17232 5.20864 5.27609 5.31363 5.45994 5.88769 6.39784 6.60789 6.86589 7.14043 7.59700 8.55205 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.015145 B = 0.006881 C = 0.004794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.362547 B = 4068.376744 C = 5839.034147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.346 6.346 3 C 0.523 3.477 4 O -0.526 6.526 5 C -0.029 4.029 6 C -0.221 4.221 7 C 0.229 3.771 8 Cl -0.028 7.028 9 N -0.567 5.567 10 C 0.359 3.641 11 N -0.427 5.427 12 C 0.140 3.860 13 C -0.338 4.338 14 H 0.100 0.900 15 C -0.002 4.002 16 N -0.888 5.888 17 Si 0.998 3.002 18 H -0.266 1.266 19 H -0.276 1.276 20 H -0.264 1.264 21 C -0.193 4.193 22 H 0.064 0.936 23 H 0.063 0.937 24 H 0.141 0.859 25 H 0.168 0.832 26 H 0.043 0.957 27 H 0.051 0.949 28 H 0.057 0.943 29 H 0.277 0.723 30 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.393 -10.353 2.143 12.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.262 6.262 3 C 0.368 3.632 4 O -0.416 6.416 5 C -0.038 4.038 6 C -0.249 4.249 7 C 0.060 3.940 8 Cl 0.000 7.000 9 N -0.292 5.292 10 C 0.119 3.881 11 N -0.115 5.115 12 C -0.004 4.004 13 C -0.466 4.466 14 H 0.118 0.882 15 C -0.206 4.206 16 N -0.523 5.523 17 Si 0.820 3.180 18 H -0.191 1.191 19 H -0.201 1.201 20 H -0.188 1.188 21 C -0.221 4.221 22 H 0.083 0.917 23 H 0.082 0.918 24 H 0.159 0.841 25 H 0.185 0.815 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -6.329 -9.639 2.022 11.707 hybrid contribution -0.874 0.923 -0.042 1.272 sum -7.203 -8.716 1.980 11.479 Atomic orbital electron populations 1.23684 0.73847 1.06275 1.02793 1.86545 1.25526 1.30617 1.83511 1.20995 0.88407 0.81808 0.71994 1.90808 1.67013 1.37183 1.46578 1.18939 0.89396 0.93655 1.01775 1.21341 0.90914 0.99308 1.13292 1.21165 0.88567 0.87400 0.96859 1.98351 1.72461 1.32673 1.96512 1.66105 1.41466 0.97103 1.24500 1.18121 0.88011 0.85512 0.96495 1.42711 1.06038 1.01294 1.61490 1.21237 0.79141 0.99162 1.00821 1.19942 1.04280 0.84289 1.38090 0.88192 1.26300 0.97111 1.03130 0.94105 1.70166 1.21764 1.29895 1.30487 0.84862 0.78744 0.76090 0.78307 1.19119 1.20133 1.18821 1.21300 0.93290 0.98059 1.09411 0.91696 0.91793 0.84064 0.81451 0.93836 0.93065 0.92449 0.91304 0.85055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.56 113.37 1.20 1.68 16 2 O -0.35 -9.25 9.92 -55.75 -0.55 -9.81 16 3 C 0.52 18.02 7.92 70.43 0.56 18.58 16 4 O -0.53 -20.61 16.23 20.05 0.33 -20.29 16 5 C -0.03 -1.10 5.90 -19.92 -0.12 -1.22 16 6 C -0.22 -7.50 9.46 22.70 0.21 -7.28 16 7 C 0.23 8.50 7.27 84.67 0.62 9.12 16 8 Cl -0.03 -0.86 29.10 -2.72 -0.08 -0.94 16 9 N -0.57 -24.92 8.95 -184.26 -1.65 -26.56 16 10 C 0.36 17.04 7.34 133.11 0.98 18.01 16 11 N -0.43 -21.65 3.11 -541.38 -1.69 -23.34 16 12 C 0.14 6.73 8.79 127.77 1.12 7.85 16 13 C -0.34 -17.38 8.89 84.05 0.75 -16.63 16 14 H 0.10 5.03 6.35 -2.91 -0.02 5.01 16 15 C 0.00 -0.11 5.14 84.88 0.44 0.32 16 16 N -0.89 -45.90 10.66 21.65 0.23 -45.67 16 17 Si 1.00 39.50 29.57 68.60 2.03 41.52 16 18 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 19 H -0.28 -10.68 7.11 99.48 0.71 -9.98 16 20 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 21 C -0.19 -8.56 8.83 22.81 0.20 -8.36 16 22 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 23 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.14 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.17 4.56 7.71 -2.91 -0.02 4.54 16 26 H 0.04 2.22 7.35 -2.38 -0.02 2.20 16 27 H 0.05 2.50 7.33 -2.39 -0.02 2.48 16 28 H 0.06 2.58 7.16 -2.39 -0.02 2.56 16 29 H 0.28 13.42 8.31 -92.71 -0.77 12.65 16 30 H 0.13 6.15 5.97 -2.91 -0.02 6.13 16 Total: -1.00 -58.51 283.55 5.75 -52.76 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: 1.18 Total: 10.24 kcal Atomic # 6 Polarization: 16.12 SS G_CDS: 5.95 Total: 22.08 kcal Atomic # 7 Polarization: -92.46 SS G_CDS: -3.10 Total: -95.57 kcal Atomic # 8 Polarization: -29.86 SS G_CDS: -0.23 Total: -30.09 kcal Atomic # 14 Polarization: 39.50 SS G_CDS: 2.03 Total: 41.52 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -0.08 Total: -0.94 kcal Total: -58.51 5.75 -52.76 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166800436.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.883 kcal (2) G-P(sol) polarization free energy of solvation -58.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds