Wall clock time and date at job start Mon Mar 30 2020 01:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34784 * 117.00039 * 2 1 4 4 O 1.21530 * 120.00021 * 359.97438 * 3 2 1 5 5 C 1.47253 * 119.99931 * 180.02562 * 3 2 1 6 6 C 1.39585 * 120.63600 * 0.02562 * 5 3 2 7 7 N 1.31613 * 120.64972 * 179.97438 * 6 5 3 8 8 C 1.32304 * 122.13197 * 359.77500 * 7 6 5 9 9 Cl 1.73598 * 119.39932 * 180.24373 * 8 7 6 10 10 C 1.37997 * 121.20780 * 0.49549 * 8 7 6 11 11 C 1.39489 * 119.19433 * 359.50082 * 10 8 7 12 12 N 1.38320 * 120.96041 * 180.27560 * 11 10 8 13 13 C 1.46504 * 120.00384 * 89.99425 * 12 11 10 14 14 C 1.36826 * 119.99921 * 269.99291 * 12 11 10 15 15 H 1.07999 * 119.99705 * 19.20579 * 14 12 11 16 16 C 1.38900 * 120.00286 * 199.20382 * 14 12 11 17 17 N 1.31495 * 119.99650 * 15.34373 * 16 14 12 18 18 Si 1.86801 * 119.99842 * 195.34704 * 16 14 12 19 19 H 1.48499 * 109.47200 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47291 * 120.00266 * 18 16 14 21 21 H 1.48509 * 109.46721 * 239.99861 * 18 16 14 22 22 H 1.09001 * 109.47050 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46706 * 299.99770 * 1 2 3 24 24 H 1.08991 * 109.47329 * 59.99796 * 1 2 3 25 25 H 1.08003 * 119.67377 * 359.97438 * 6 5 3 26 26 H 1.07995 * 120.40448 * 179.76930 * 10 8 7 27 27 H 1.08993 * 109.46988 * 94.97877 * 13 12 11 28 28 H 1.08993 * 109.46926 * 214.98081 * 13 12 11 29 29 H 1.08999 * 109.46828 * 334.97677 * 13 12 11 30 30 H 0.97001 * 119.99525 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2009 0.0000 4 8 1.4020 2.2202 -0.0005 5 6 3.5344 1.2780 -0.0006 6 6 4.3076 0.1158 -0.0017 7 7 5.6219 0.1844 -0.0027 8 6 6.2663 1.3399 -0.0071 9 17 8.0023 1.3475 -0.0146 10 6 5.5838 2.5392 -0.0007 11 6 4.1889 2.5283 0.0000 12 7 3.4681 3.7088 0.0006 13 6 3.0857 4.3343 -1.2678 14 6 3.1121 4.2923 1.1859 15 1 3.6330 4.0300 2.0948 16 6 2.0807 5.2221 1.2201 17 7 1.2536 5.3242 0.2030 18 14 1.8689 6.3275 2.7110 19 1 2.9210 6.0161 3.7116 20 1 1.9859 7.7481 2.2946 21 1 0.5307 6.0965 3.3122 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 3.8225 -0.8491 -0.0017 26 1 6.1230 3.4749 -0.0007 27 1 2.0770 4.0218 -1.5374 28 1 3.1139 5.4187 -1.1611 29 1 3.7820 4.0279 -2.0484 30 1 0.5336 5.9738 0.2268 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166800709.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:30 Heat of formation + Delta-G solvation = -13.331305 kcal Electronic energy + Delta-G solvation = -18780.468499 eV Core-core repulsion = 15603.659222 eV Total energy + Delta-G solvation = -3176.809277 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.15227 -38.89675 -36.57147 -36.04485 -35.24442 -32.21823 -31.03072 -29.90443 -27.27703 -26.15892 -24.31574 -23.80865 -21.41833 -20.35635 -17.64581 -17.32600 -16.48775 -16.20286 -15.67096 -15.57468 -14.81056 -14.14936 -14.06254 -13.73260 -13.28605 -13.13558 -12.60695 -12.39174 -11.82309 -11.66810 -11.35354 -11.18760 -11.10871 -11.01812 -10.76211 -10.29185 -10.22792 -10.13689 -9.78783 -9.13332 -8.95766 -8.77777 -8.57601 -7.20612 -6.00251 -3.40046 0.96388 1.67118 2.09960 3.23082 3.25515 3.28482 3.31991 3.34262 4.19529 4.27865 4.82240 4.99441 5.22224 5.28530 5.46071 5.56867 5.60213 5.62062 5.88297 6.01321 6.07388 6.48277 6.66741 6.84104 7.06321 7.20827 7.55754 7.62345 8.07745 8.11986 8.63830 8.88481 9.56692 9.93967 11.01390 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.015189 B = 0.008285 C = 0.005929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.980921 B = 3378.914091 C = 4721.044093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.375 6.375 3 C 0.481 3.519 4 O -0.422 6.422 5 C -0.207 4.207 6 C 0.174 3.826 7 N -0.516 5.516 8 C 0.193 3.807 9 Cl -0.051 7.051 10 C -0.179 4.179 11 C 0.305 3.695 12 N -0.537 5.537 13 C 0.162 3.838 14 C -0.257 4.257 15 H 0.076 0.924 16 C 0.023 3.977 17 N -0.859 5.859 18 Si 0.910 3.090 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.287 1.287 22 H 0.092 0.908 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.167 0.833 26 H 0.145 0.855 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.002 0.998 30 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.557 -7.634 -1.778 8.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.294 6.294 3 C 0.321 3.679 4 O -0.303 6.303 5 C -0.215 4.215 6 C 0.013 3.987 7 N -0.229 5.229 8 C 0.032 3.968 9 Cl -0.022 7.022 10 C -0.203 4.203 11 C 0.197 3.803 12 N -0.251 5.251 13 C 0.019 3.981 14 C -0.384 4.384 15 H 0.093 0.907 16 C -0.181 4.181 17 N -0.498 5.498 18 Si 0.739 3.261 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.213 1.213 22 H 0.110 0.890 23 H 0.077 0.923 24 H 0.076 0.924 25 H 0.184 0.816 26 H 0.163 0.837 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.021 0.979 30 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.731 -7.783 -1.832 8.824 hybrid contribution -0.807 1.239 0.912 1.737 sum 2.924 -6.545 -0.920 7.227 Atomic orbital electron populations 1.23049 0.77185 1.02410 1.02391 1.86491 1.22607 1.34132 1.86198 1.20769 0.88690 0.81767 0.76684 1.91176 1.65247 1.33949 1.39896 1.21209 0.91327 0.96138 1.12841 1.22785 0.87285 0.97892 0.90689 1.66927 1.10341 1.27810 1.17816 1.21615 0.86178 0.90195 0.98822 1.98367 1.08698 1.98633 1.96524 1.22527 0.94744 0.97762 1.05306 1.17716 0.89658 0.87017 0.85948 1.41349 1.60150 1.18457 1.05098 1.21014 0.97253 0.97441 0.82378 1.19251 1.14263 1.17769 0.87086 0.90657 1.25105 0.94799 1.00389 0.97817 1.70127 1.14959 1.34180 1.30521 0.86117 0.77912 0.80235 0.81884 1.19882 1.21028 1.21330 0.89002 0.92320 0.92353 0.81631 0.83739 0.93071 0.92798 0.97940 0.93286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 60. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.62 10.57 101.05 1.07 1.69 16 2 O -0.38 -6.50 9.84 -40.72 -0.40 -6.90 16 3 C 0.48 10.09 7.89 34.39 0.27 10.36 16 4 O -0.42 -10.48 13.29 -19.29 -0.26 -10.73 16 5 C -0.21 -4.16 5.91 -104.64 -0.62 -4.78 16 6 C 0.17 3.00 10.79 -17.14 -0.18 2.81 16 7 N -0.52 -9.17 10.31 -10.09 -0.10 -9.27 16 8 C 0.19 3.38 7.26 -17.44 -0.13 3.26 16 9 Cl -0.05 -0.76 29.09 -51.86 -1.51 -2.26 16 10 C -0.18 -3.38 9.81 -39.20 -0.38 -3.76 16 11 C 0.30 6.57 5.05 -83.38 -0.42 6.15 16 12 N -0.54 -13.08 1.58 -120.02 -0.19 -13.27 16 13 C 0.16 3.85 8.63 59.85 0.52 4.37 16 14 C -0.26 -6.76 8.89 -15.08 -0.13 -6.90 16 15 H 0.08 1.99 7.88 -52.49 -0.41 1.57 16 16 C 0.02 0.60 5.06 -17.45 -0.09 0.51 16 17 N -0.86 -23.53 10.62 55.49 0.59 -22.94 16 18 Si 0.91 20.83 29.58 -169.99 -5.03 15.81 16 19 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 22 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 23 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 24 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.17 2.38 7.62 -52.48 -0.40 1.98 16 26 H 0.14 2.57 8.06 -52.49 -0.42 2.15 16 27 H 0.05 1.34 6.61 -51.93 -0.34 0.99 16 28 H 0.05 1.33 7.13 -51.93 -0.37 0.96 16 29 H 0.00 0.04 8.00 -51.93 -0.42 -0.37 16 30 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 LS Contribution 283.51 15.07 4.27 4.27 Total: -1.00 -29.07 283.51 -5.50 -34.57 By element: Atomic # 1 Polarization: -0.20 SS G_CDS: -2.77 Total: -2.97 kcal Atomic # 6 Polarization: 13.81 SS G_CDS: -0.10 Total: 13.71 kcal Atomic # 7 Polarization: -45.78 SS G_CDS: 0.29 Total: -45.48 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: -0.66 Total: -17.64 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.03 Total: 15.81 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -1.51 Total: -2.26 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -29.07 -5.50 -34.57 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166800709.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.236 kcal (2) G-P(sol) polarization free energy of solvation -29.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds