Wall clock time and date at job start Mon Mar 30 2020 01:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34784 * 117.00039 * 2 1 4 4 O 1.21530 * 120.00021 * 359.97438 * 3 2 1 5 5 C 1.47253 * 119.99931 * 180.02562 * 3 2 1 6 6 C 1.39585 * 120.63600 * 0.02562 * 5 3 2 7 7 N 1.31613 * 120.64972 * 179.97438 * 6 5 3 8 8 C 1.32304 * 122.13197 * 359.77500 * 7 6 5 9 9 Cl 1.73598 * 119.39932 * 180.24373 * 8 7 6 10 10 C 1.37997 * 121.20780 * 0.49549 * 8 7 6 11 11 C 1.39489 * 119.19433 * 359.50082 * 10 8 7 12 12 N 1.38320 * 120.96041 * 180.27560 * 11 10 8 13 13 C 1.46504 * 120.00384 * 89.99425 * 12 11 10 14 14 C 1.36826 * 119.99921 * 269.99291 * 12 11 10 15 15 H 1.07999 * 119.99705 * 19.20579 * 14 12 11 16 16 C 1.38900 * 120.00286 * 199.20382 * 14 12 11 17 17 N 1.31495 * 119.99650 * 15.34373 * 16 14 12 18 18 Si 1.86801 * 119.99842 * 195.34704 * 16 14 12 19 19 H 1.48499 * 109.47200 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47291 * 120.00266 * 18 16 14 21 21 H 1.48509 * 109.46721 * 239.99861 * 18 16 14 22 22 H 1.09001 * 109.47050 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46706 * 299.99770 * 1 2 3 24 24 H 1.08991 * 109.47329 * 59.99796 * 1 2 3 25 25 H 1.08003 * 119.67377 * 359.97438 * 6 5 3 26 26 H 1.07995 * 120.40448 * 179.76930 * 10 8 7 27 27 H 1.08993 * 109.46988 * 94.97877 * 13 12 11 28 28 H 1.08993 * 109.46926 * 214.98081 * 13 12 11 29 29 H 1.08999 * 109.46828 * 334.97677 * 13 12 11 30 30 H 0.97001 * 119.99525 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2009 0.0000 4 8 1.4020 2.2202 -0.0005 5 6 3.5344 1.2780 -0.0006 6 6 4.3076 0.1158 -0.0017 7 7 5.6219 0.1844 -0.0027 8 6 6.2663 1.3399 -0.0071 9 17 8.0023 1.3475 -0.0146 10 6 5.5838 2.5392 -0.0007 11 6 4.1889 2.5283 0.0000 12 7 3.4681 3.7088 0.0006 13 6 3.0857 4.3343 -1.2678 14 6 3.1121 4.2923 1.1859 15 1 3.6330 4.0300 2.0948 16 6 2.0807 5.2221 1.2201 17 7 1.2536 5.3242 0.2030 18 14 1.8689 6.3275 2.7110 19 1 2.9210 6.0161 3.7116 20 1 1.9859 7.7481 2.2946 21 1 0.5307 6.0965 3.3122 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 3.8225 -0.8491 -0.0017 26 1 6.1230 3.4749 -0.0007 27 1 2.0770 4.0218 -1.5374 28 1 3.1139 5.4187 -1.1611 29 1 3.7820 4.0279 -2.0484 30 1 0.5336 5.9738 0.2268 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166800709.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:30 Heat of formation + Delta-G solvation = -30.409573 kcal Electronic energy + Delta-G solvation = -18781.209069 eV Core-core repulsion = 15603.659222 eV Total energy + Delta-G solvation = -3177.549846 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.75397 -40.45328 -38.13476 -37.53807 -36.89843 -33.98906 -32.58553 -31.62072 -28.57696 -28.03860 -26.00895 -25.36390 -23.08899 -21.92957 -19.34996 -18.94191 -18.14152 -17.81062 -17.17270 -17.10023 -16.55988 -15.65348 -15.62179 -15.42755 -14.94962 -14.68118 -14.14123 -14.01104 -13.47383 -13.06779 -12.95632 -12.92465 -12.65863 -12.59270 -12.36200 -12.13153 -12.05683 -11.60591 -11.44685 -10.77860 -10.64912 -10.54676 -10.07804 -9.06985 -7.87239 -5.38385 -0.58090 0.11030 0.66963 1.43525 1.45342 1.54868 1.64668 1.82340 2.42818 2.67789 3.19387 3.28382 3.53040 3.73388 3.97823 4.09435 4.38830 4.40892 4.42909 4.56356 4.72605 4.73837 5.05524 5.20489 5.37441 5.51201 5.59405 5.69880 6.25555 6.54966 7.02006 7.04011 7.74563 8.10859 9.15174 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.015189 B = 0.008285 C = 0.005929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.980921 B = 3378.914091 C = 4721.044093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.363 6.363 3 C 0.485 3.515 4 O -0.464 6.464 5 C -0.216 4.216 6 C 0.191 3.809 7 N -0.508 5.508 8 C 0.205 3.795 9 Cl -0.015 7.015 10 C -0.182 4.182 11 C 0.297 3.703 12 N -0.560 5.560 13 C 0.184 3.816 14 C -0.273 4.273 15 H 0.066 0.934 16 C -0.023 4.023 17 N -0.899 5.899 18 Si 0.964 3.036 19 H -0.268 1.268 20 H -0.283 1.283 21 H -0.295 1.295 22 H 0.141 0.859 23 H 0.047 0.953 24 H 0.052 0.948 25 H 0.203 0.797 26 H 0.155 0.845 27 H 0.018 0.982 28 H 0.035 0.965 29 H 0.024 0.976 30 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.344 -10.221 -1.637 11.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.281 6.281 3 C 0.326 3.674 4 O -0.348 6.348 5 C -0.223 4.223 6 C 0.031 3.969 7 N -0.220 5.220 8 C 0.043 3.957 9 Cl 0.013 6.987 10 C -0.206 4.206 11 C 0.193 3.807 12 N -0.278 5.278 13 C 0.041 3.959 14 C -0.401 4.401 15 H 0.083 0.917 16 C -0.222 4.222 17 N -0.541 5.541 18 Si 0.792 3.208 19 H -0.193 1.193 20 H -0.210 1.210 21 H -0.222 1.222 22 H 0.159 0.841 23 H 0.066 0.934 24 H 0.070 0.930 25 H 0.220 0.780 26 H 0.172 0.828 27 H 0.036 0.964 28 H 0.053 0.947 29 H 0.043 0.957 30 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 5.578 -10.458 -1.684 11.971 hybrid contribution -1.100 1.642 0.735 2.109 sum 4.478 -8.815 -0.949 9.933 Atomic orbital electron populations 1.23392 0.75122 1.05349 1.01601 1.86473 1.24477 1.31877 1.85307 1.21005 0.89073 0.82113 0.75224 1.91200 1.66212 1.35635 1.41746 1.21437 0.91554 0.96816 1.12478 1.23267 0.86873 0.98236 0.88506 1.67148 1.10449 1.27574 1.16790 1.21829 0.87863 0.89653 0.96377 1.98391 1.05591 1.98570 1.96132 1.22559 0.93773 0.98957 1.05278 1.18170 0.90578 0.86893 0.85097 1.41240 1.61901 1.20210 1.04416 1.20619 0.96097 0.96138 0.83080 1.19127 1.14116 1.19816 0.87025 0.91663 1.25648 0.94923 1.01721 0.99921 1.70279 1.16045 1.35533 1.32289 0.85287 0.77204 0.78787 0.79538 1.19255 1.20973 1.22236 0.84069 0.93449 0.92964 0.78016 0.82758 0.96374 0.94660 0.95717 0.94265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.02 10.57 113.37 1.20 2.22 16 2 O -0.36 -11.78 9.84 -56.96 -0.56 -12.34 16 3 C 0.48 19.99 7.89 70.19 0.55 20.54 16 4 O -0.46 -23.60 13.29 19.74 0.26 -23.34 16 5 C -0.22 -8.33 5.91 -19.87 -0.12 -8.44 16 6 C 0.19 5.87 10.79 85.05 0.92 6.79 16 7 N -0.51 -15.97 10.31 -185.83 -1.92 -17.89 16 8 C 0.20 6.48 7.26 84.56 0.61 7.10 16 9 Cl -0.02 -0.40 29.09 -2.72 -0.08 -0.48 16 10 C -0.18 -6.49 9.81 22.51 0.22 -6.27 16 11 C 0.30 12.58 5.05 39.13 0.20 12.78 16 12 N -0.56 -27.84 1.58 -533.63 -0.85 -28.69 16 13 C 0.18 9.07 8.63 127.77 1.10 10.17 16 14 C -0.27 -14.82 8.89 84.07 0.75 -14.07 16 15 H 0.07 3.54 7.88 -2.91 -0.02 3.51 16 16 C -0.02 -1.27 5.06 84.90 0.43 -0.85 16 17 N -0.90 -51.96 10.62 21.66 0.23 -51.73 16 18 Si 0.96 44.51 29.58 68.60 2.03 46.54 16 19 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 20 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 21 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 22 H 0.14 2.34 8.14 -2.39 -0.02 2.32 16 23 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 24 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.20 4.78 7.62 -2.91 -0.02 4.76 16 26 H 0.15 5.20 8.06 -2.91 -0.02 5.18 16 27 H 0.02 0.99 6.61 -2.39 -0.02 0.97 16 28 H 0.03 1.83 7.13 -2.39 -0.02 1.81 16 29 H 0.02 1.05 8.00 -2.39 -0.02 1.03 16 30 H 0.25 13.94 8.31 -92.71 -0.77 13.16 16 Total: -1.00 -64.98 283.51 6.16 -58.82 By element: Atomic # 1 Polarization: -2.03 SS G_CDS: 1.17 Total: -0.86 kcal Atomic # 6 Polarization: 24.11 SS G_CDS: 5.86 Total: 29.97 kcal Atomic # 7 Polarization: -95.78 SS G_CDS: -2.53 Total: -98.31 kcal Atomic # 8 Polarization: -35.39 SS G_CDS: -0.30 Total: -35.68 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -0.08 Total: -0.48 kcal Total: -64.98 6.16 -58.82 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166800709.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.409 kcal (2) G-P(sol) polarization free energy of solvation -64.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds