Wall clock time and date at job start Mon Mar 30 2020 01:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34786 * 116.99627 * 2 1 4 4 O 1.21528 * 120.00300 * 0.02562 * 3 2 1 5 5 C 1.47235 * 119.99491 * 179.97438 * 3 2 1 6 6 C 1.40206 * 120.62723 * 93.29430 * 5 3 2 7 7 Cl 1.73598 * 120.83731 * 0.03546 * 6 5 3 8 8 C 1.38523 * 118.32157 * 180.02562 * 6 5 3 9 9 C 1.38373 * 119.50732 * 359.97438 * 8 6 5 10 10 N 1.31816 * 121.26116 * 359.72673 * 9 8 6 11 11 C 1.32490 * 121.82917 * 0.56167 * 10 9 8 12 12 N 1.38179 * 119.82870 * 179.71186 * 11 10 9 13 13 C 1.46503 * 119.99782 * 91.61556 * 12 11 10 14 14 C 1.36883 * 120.00082 * 271.60121 * 12 11 10 15 15 H 1.07994 * 120.00158 * 0.11044 * 14 12 11 16 16 C 1.38881 * 119.99962 * 180.37191 * 14 12 11 17 17 N 1.31511 * 119.99661 * 14.97880 * 16 14 12 18 18 Si 1.86794 * 120.00156 * 194.97086 * 16 14 12 19 19 H 1.48501 * 109.47014 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.47031 * 120.00511 * 18 16 14 21 21 H 1.48501 * 109.47321 * 240.00581 * 18 16 14 22 22 H 1.08999 * 109.46770 * 59.99801 * 1 2 3 23 23 H 1.08995 * 109.47124 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.46777 * 300.00093 * 1 2 3 25 25 H 1.07999 * 120.24649 * 180.02562 * 8 6 5 26 26 H 1.07999 * 119.36911 * 180.02562 * 9 8 6 27 27 H 1.09005 * 109.46394 * 234.62088 * 13 12 11 28 28 H 1.08994 * 109.47039 * 354.61324 * 13 12 11 29 29 H 1.08992 * 109.47531 * 114.61623 * 13 12 11 30 30 H 0.97004 * 119.99815 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2010 0.0000 4 8 1.4020 2.2202 0.0005 5 6 3.5342 1.2780 0.0006 6 6 4.2444 1.3844 -1.2037 7 17 3.4122 1.4291 -2.7265 8 6 5.6268 1.4530 -1.1475 9 6 6.2616 1.4158 0.0814 10 7 5.5758 1.3213 1.2031 11 6 4.2530 1.2468 1.2091 12 7 3.5758 1.1429 2.4091 13 6 3.1149 2.3514 3.0970 14 6 3.3356 -0.0892 2.9550 15 1 3.6767 -0.9800 2.4487 16 6 2.6482 -0.1939 4.1572 17 7 1.9769 0.8366 4.6227 18 14 2.6772 -1.7987 5.1129 19 1 3.4980 -2.7962 4.3805 20 1 3.2656 -1.5643 6.4561 21 1 1.2914 -2.3111 5.2621 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 6.2047 1.5359 -2.0561 26 1 7.3395 1.4699 0.1226 27 1 3.4993 2.3578 4.1170 28 1 3.4773 3.2320 2.5667 29 1 2.0252 2.3636 3.1193 30 1 1.4965 0.7633 5.4623 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166800762.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:19 Heat of formation + Delta-G solvation = -31.206231 kcal Electronic energy + Delta-G solvation = -18960.292566 eV Core-core repulsion = 15782.708174 eV Total energy + Delta-G solvation = -3177.584392 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.89781 -40.64130 -38.11128 -37.49543 -37.38134 -33.75135 -33.49063 -31.30033 -28.73900 -28.24000 -26.14019 -25.44587 -23.07146 -22.28256 -19.54855 -19.02447 -18.32397 -18.28433 -17.93282 -16.86796 -16.57020 -15.69327 -15.62588 -15.27334 -14.79977 -14.64854 -14.29442 -14.11607 -13.85525 -13.36197 -13.15418 -13.06265 -12.86229 -12.63327 -12.33345 -12.15403 -12.04560 -11.82372 -11.79824 -10.96749 -10.66607 -10.60303 -10.04220 -9.40152 -7.94324 -5.44935 -0.31368 -0.05460 0.65696 0.99164 1.44305 1.46931 1.57811 1.75197 2.35433 2.56069 2.92694 3.20036 3.61231 3.68244 3.89732 4.15143 4.20927 4.26282 4.30790 4.54848 4.57391 4.63530 4.75211 5.22810 5.24455 5.31178 5.52107 5.59059 6.11853 6.58271 6.87021 6.98301 7.65435 7.97450 9.06634 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.020448 B = 0.008065 C = 0.006759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.966010 B = 3471.172593 C = 4141.393637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.352 6.352 3 C 0.546 3.454 4 O -0.526 6.526 5 C -0.196 4.196 6 C 0.037 3.963 7 Cl -0.038 7.038 8 C -0.162 4.162 9 C 0.149 3.851 10 N -0.520 5.520 11 C 0.435 3.565 12 N -0.572 5.572 13 C 0.193 3.807 14 C -0.269 4.269 15 H 0.075 0.925 16 C -0.037 4.037 17 N -0.930 5.930 18 Si 0.978 3.022 19 H -0.268 1.268 20 H -0.285 1.285 21 H -0.285 1.285 22 H 0.074 0.926 23 H 0.133 0.867 24 H 0.045 0.955 25 H 0.200 0.800 26 H 0.216 0.784 27 H 0.030 0.970 28 H 0.011 0.989 29 H 0.031 0.969 30 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.989 -0.830 -13.653 14.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.268 6.268 3 C 0.389 3.611 4 O -0.416 6.416 5 C -0.205 4.205 6 C 0.002 3.998 7 Cl -0.009 7.009 8 C -0.182 4.182 9 C -0.010 4.010 10 N -0.232 5.232 11 C 0.207 3.793 12 N -0.293 5.293 13 C 0.050 3.950 14 C -0.396 4.396 15 H 0.092 0.908 16 C -0.232 4.232 17 N -0.576 5.576 18 Si 0.805 3.195 19 H -0.192 1.192 20 H -0.212 1.212 21 H -0.212 1.212 22 H 0.093 0.907 23 H 0.151 0.849 24 H 0.064 0.936 25 H 0.217 0.783 26 H 0.233 0.767 27 H 0.049 0.951 28 H 0.030 0.970 29 H 0.049 0.951 30 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.964 -0.546 -12.777 13.718 hybrid contribution -1.156 -0.443 0.059 1.240 sum 3.808 -0.989 -12.717 13.312 Atomic orbital electron populations 1.23508 0.74699 1.05651 1.02091 1.86633 1.25095 1.31891 1.83148 1.20622 0.88611 0.81681 0.70196 1.90777 1.67047 1.36923 1.46852 1.20885 0.91489 1.12587 0.95519 1.21507 0.93958 0.98954 0.85380 1.98387 1.78549 1.96286 1.27704 1.22471 0.90558 1.02698 1.02481 1.23753 1.02390 0.89452 0.85452 1.68045 1.08273 1.13617 1.33311 1.18211 0.87185 0.87918 0.85954 1.41383 1.62344 1.05117 1.20475 1.20762 0.97564 0.82793 0.93878 1.19295 1.32730 0.83538 1.04068 0.90757 1.25642 0.97686 1.01357 0.98525 1.70354 1.33826 1.31605 1.21785 0.85065 0.77426 0.78731 0.78314 1.19235 1.21153 1.21175 0.90700 0.84890 0.93591 0.78343 0.76741 0.95100 0.96991 0.95051 0.93608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.11 10.57 113.37 1.20 2.31 16 2 O -0.35 -14.88 10.58 -56.98 -0.60 -15.48 16 3 C 0.55 24.51 6.06 70.19 0.43 24.93 16 4 O -0.53 -25.41 16.90 19.74 0.33 -25.08 16 5 C -0.20 -8.22 5.79 -19.85 -0.11 -8.33 16 6 C 0.04 1.18 6.40 22.82 0.15 1.33 16 7 Cl -0.04 -1.05 28.19 -2.72 -0.08 -1.13 16 8 C -0.16 -3.76 9.91 22.37 0.22 -3.54 16 9 C 0.15 3.89 11.16 84.73 0.95 4.83 16 10 N -0.52 -20.56 10.38 -192.46 -2.00 -22.56 16 11 C 0.43 20.05 5.93 133.69 0.79 20.85 16 12 N -0.57 -30.70 2.41 -540.47 -1.30 -32.00 16 13 C 0.19 10.49 8.96 127.77 1.14 11.63 16 14 C -0.27 -15.14 9.77 84.06 0.82 -14.32 16 15 H 0.07 4.17 7.87 -2.91 -0.02 4.14 16 16 C -0.04 -2.04 5.32 84.89 0.45 -1.59 16 17 N -0.93 -54.24 9.72 21.66 0.21 -54.03 16 18 Si 0.98 44.85 29.58 68.60 2.03 46.88 16 19 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 20 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 21 H -0.29 -12.83 7.11 99.48 0.71 -12.13 16 22 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 23 H 0.13 3.34 8.14 -2.39 -0.02 3.32 16 24 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.20 2.55 8.06 -2.91 -0.02 2.53 16 26 H 0.22 3.26 8.06 -2.91 -0.02 3.24 16 27 H 0.03 1.74 7.20 -2.38 -0.02 1.73 16 28 H 0.01 0.58 7.90 -2.39 -0.02 0.56 16 29 H 0.03 1.84 6.98 -2.39 -0.02 1.83 16 30 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 Total: -1.00 -71.99 287.75 5.79 -66.19 By element: Atomic # 1 Polarization: -2.06 SS G_CDS: 1.17 Total: -0.89 kcal Atomic # 6 Polarization: 32.06 SS G_CDS: 6.03 Total: 38.09 kcal Atomic # 7 Polarization: -105.50 SS G_CDS: -3.09 Total: -108.59 kcal Atomic # 8 Polarization: -40.28 SS G_CDS: -0.27 Total: -40.55 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Atomic # 17 Polarization: -1.05 SS G_CDS: -0.08 Total: -1.13 kcal Total: -71.99 5.79 -66.19 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166800762.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.985 kcal (2) G-P(sol) polarization free energy of solvation -71.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds