Wall clock time and date at job start Mon Mar 30 2020 01:07:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45202 * 1
3 3 C 1.34686 * 116.99917 * 2 1
4 4 O 1.21436 * 119.99883 * 359.97438 * 3 2 1
5 5 C 1.47978 * 119.99747 * 179.97438 * 3 2 1
6 6 C 1.39626 * 120.89635 * 0.02562 * 5 3 2
7 7 C 1.39094 * 118.93914 * 179.72674 * 6 5 3
8 8 N 1.38890 * 119.63113 * 180.25355 * 7 6 5
9 9 C 1.46496 * 120.00452 * 184.99937 * 8 7 6
10 10 C 1.36879 * 119.99656 * 4.99671 * 8 7 6
11 11 H 1.08004 * 120.00278 * 24.35138 * 10 8 7
12 12 C 1.38831 * 120.00167 * 204.35421 * 10 8 7
13 13 N 1.31555 * 119.99788 * 10.43753 * 12 10 8
14 14 Si 1.86792 * 119.99798 * 190.44212 * 12 10 8
15 15 H 1.48497 * 109.47583 * 59.99847 * 14 12 10
16 16 H 1.48505 * 109.46994 * 180.02562 * 14 12 10
17 17 H 1.48502 * 109.47376 * 299.99399 * 14 12 10
18 18 N 1.32467 * 120.74750 * 0.27056 * 7 6 5
19 19 C 1.31783 * 121.97946 * 0.02562 * 18 7 6
20 20 C 1.38263 * 120.98376 * 359.97438 * 19 18 7
21 21 Cl 1.73604 * 120.43033 * 179.97438 * 20 19 18
22 22 H 1.09001 * 109.46935 * 60.00536 * 1 2 3
23 23 H 1.08994 * 109.46935 * 180.02562 * 1 2 3
24 24 H 1.08998 * 109.46912 * 300.00355 * 1 2 3
25 25 H 1.08007 * 120.53324 * 359.97438 * 6 5 3
26 26 H 1.08996 * 109.47402 * 93.53618 * 9 8 7
27 27 H 1.09004 * 109.46908 * 213.53468 * 9 8 7
28 28 H 1.08998 * 109.46928 * 333.53127 * 9 8 7
29 29 H 0.96997 * 120.00278 * 180.02562 * 13 12 10
30 30 H 1.07998 * 119.50523 * 179.97438 * 19 18 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0635 1.2001 0.0000
4 8 1.4020 2.2185 -0.0005
5 6 3.5412 1.2775 0.0006
6 6 4.3199 0.1185 0.0006
7 6 5.7056 0.2386 -0.0047
8 7 6.4940 -0.9048 -0.0101
9 6 7.9507 -0.7907 0.0949
10 6 5.9098 -2.1383 -0.1135
11 1 4.9370 -2.2385 -0.5719
12 6 6.5677 -3.2608 0.3709
13 7 7.6486 -3.1227 1.1079
14 14 5.9180 -4.9670 -0.0239
15 1 5.9077 -5.1645 -1.4956
16 1 6.7927 -5.9880 0.6069
17 1 4.5368 -5.1052 0.5038
18 7 6.2820 1.4313 -0.0042
19 6 5.5792 2.5461 0.0016
20 6 4.1969 2.5161 0.0071
21 17 3.2853 3.9935 0.0154
22 1 -0.3633 0.5138 -0.8901
23 1 -0.3633 -1.0276 0.0005
24 1 -0.3633 0.5139 0.8899
25 1 3.8537 -0.8558 0.0006
26 1 8.2477 -0.8783 1.1400
27 1 8.4201 -1.5861 -0.4840
28 1 8.2683 0.1770 -0.2932
29 1 8.1085 -3.9069 1.4461
30 1 6.0907 3.4973 0.0021
RHF calculation, no. of doubly occupied orbitals= 46
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001166800947.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:07:21
Heat of formation + Delta-G solvation = -29.896723 kcal
Electronic energy + Delta-G solvation = -18256.258675 eV
Core-core repulsion = 15078.731068 eV
Total energy + Delta-G solvation = -3177.527607 eV
No. of doubly occupied orbitals = 46
Molecular weight
(most abundant/longest-lived isotopes) = 270.056 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-40.18521 -39.07141 -36.50884 -35.90832 -35.40909 -32.33386 -31.93082 -28.98752
-27.73976 -26.77126 -24.49780 -23.46885 -22.05410 -20.22375 -17.96437 -17.54057
-16.73398 -16.05204 -15.70243 -15.38154 -15.18846 -14.52428 -14.02301 -13.76654
-13.30651 -13.14161 -12.96306 -12.47433 -12.07437 -11.80438 -11.48132 -11.39020
-11.09540 -11.01977 -10.77709 -10.68347 -10.58509 -10.54282 -9.78649 -9.54939
-9.16615 -8.82098 -8.59248 -7.06638 -6.65801 -4.10794 1.26519 2.00625
2.90694 2.99229 3.02673 3.04573 3.08864 3.15053 3.78132 4.42403
4.47298 4.88498 5.10190 5.23573 5.28871 5.30232 5.61316 5.82317
5.86689 6.37528 6.41301 6.45144 6.58667 6.71221 6.78952 7.08161
7.11651 7.15849 7.65148 8.09655 8.17524 8.67942 8.89446 9.37223
10.28098
Molecular weight = 270.06amu
Principal moments of inertia in cm(-1)
A = 0.020219 B = 0.006505 C = 0.004988
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1384.488714 B = 4303.496478 C = 5611.794355
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.038 3.962
2 O -0.352 6.352
3 C 0.508 3.492
4 O -0.490 6.490
5 C -0.034 4.034
6 C -0.172 4.172
7 C 0.345 3.655
8 N -0.396 5.396
9 C 0.119 3.881
10 C -0.316 4.316
11 H 0.104 0.896
12 C 0.037 3.963
13 N -0.855 5.855
14 Si 0.935 3.065
15 H -0.269 1.269
16 H -0.279 1.279
17 H -0.267 1.267
18 N -0.546 5.546
19 C 0.179 3.821
20 C -0.181 4.181
21 Cl -0.074 7.074
22 H 0.060 0.940
23 H 0.099 0.901
24 H 0.060 0.940
25 H 0.146 0.854
26 H 0.062 0.938
27 H 0.062 0.938
28 H 0.049 0.951
29 H 0.277 0.723
30 H 0.152 0.848
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.199 3.053 -1.759 7.130
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.056 4.056
2 O -0.269 6.269
3 C 0.352 3.648
4 O -0.377 6.377
5 C -0.042 4.042
6 C -0.200 4.200
7 C 0.103 3.897
8 N -0.081 5.081
9 C -0.024 4.024
10 C -0.445 4.445
11 H 0.122 0.878
12 C -0.171 4.171
13 N -0.489 5.489
14 Si 0.760 3.240
15 H -0.194 1.194
16 H -0.204 1.204
17 H -0.192 1.192
18 N -0.267 5.267
19 C 0.014 3.986
20 C -0.218 4.218
21 Cl -0.046 7.046
22 H 0.079 0.921
23 H 0.117 0.883
24 H 0.079 0.921
25 H 0.163 0.837
26 H 0.080 0.920
27 H 0.081 0.919
28 H 0.068 0.932
29 H 0.087 0.913
30 H 0.169 0.831
Dipole moment (debyes) X Y Z Total
from point charges -5.210 2.958 -1.640 6.211
hybrid contribution -1.394 -0.770 -0.048 1.593
sum -6.603 2.187 -1.688 7.158
Atomic orbital electron populations
1.23205 0.76732 1.03387 1.02257 1.86611 1.22892 1.32960 1.84421
1.21295 0.89125 0.81310 0.73040 1.90849 1.66622 1.35490 1.44730
1.18718 0.88479 0.93170 1.03847 1.21525 0.92754 0.98084 1.07633
1.18338 0.87791 0.86586 0.97034 1.42668 1.05172 1.01888 1.58365
1.21522 0.79365 0.99220 1.02268 1.19755 1.05601 0.81699 1.37431
0.87842 1.25524 0.96216 1.00879 0.94485 1.70070 1.17688 1.31794
1.29299 0.85841 0.79128 0.79859 0.79171 1.19361 1.20442 1.19193
1.67095 1.39294 0.97010 1.23345 1.21981 0.87876 0.96060 0.92684
1.21025 0.92548 0.85890 1.22300 1.98290 1.74787 1.33952 1.97575
0.92102 0.88281 0.92090 0.83684 0.91961 0.91926 0.93216 0.91286
0.83109
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.46 10.56 101.05 1.07 1.53 16
2 O -0.35 -5.93 9.91 -40.46 -0.40 -6.33 16
3 C 0.51 9.63 7.92 34.72 0.27 9.90 16
4 O -0.49 -9.63 13.94 -19.22 -0.27 -9.90 16
5 C -0.03 -0.68 5.91 -104.67 -0.62 -1.30 16
6 C -0.17 -3.66 8.85 -38.75 -0.34 -4.01 16
7 C 0.34 7.82 7.34 -155.09 -1.14 6.68 16
8 N -0.40 -9.45 3.12 -122.47 -0.38 -9.83 16
9 C 0.12 2.68 8.78 59.84 0.53 3.21 16
10 C -0.32 -7.58 8.89 -15.08 -0.13 -7.71 16
11 H 0.10 2.37 6.34 -52.48 -0.33 2.04 16
12 C 0.04 0.87 5.14 -17.45 -0.09 0.78 16
13 N -0.86 -20.84 10.66 55.49 0.59 -20.25 16
14 Si 0.94 18.17 29.57 -169.99 -5.03 13.14 16
15 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16
16 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16
17 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16
18 N -0.55 -11.68 8.99 -12.44 -0.11 -11.79 16
19 C 0.18 3.38 10.97 -17.56 -0.19 3.19 16
20 C -0.18 -3.52 6.38 -38.86 -0.25 -3.77 16
21 Cl -0.07 -1.33 26.22 -51.86 -1.36 -2.69 16
22 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16
23 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16
24 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16
25 H 0.15 3.04 5.94 -52.48 -0.31 2.73 16
26 H 0.06 1.47 7.41 -51.93 -0.38 1.09 16
27 H 0.06 1.42 7.26 -51.93 -0.38 1.04 16
28 H 0.05 1.04 7.19 -51.93 -0.37 0.67 16
29 H 0.28 6.36 8.31 -40.82 -0.34 6.02 16
30 H 0.15 2.36 8.06 -52.49 -0.42 1.94 16
LS Contribution 279.38 15.07 4.21 4.21
Total: -1.00 -26.60 279.38 -6.25 -32.85
By element:
Atomic # 1 Polarization: 4.67 SS G_CDS: -2.60 Total: 2.07 kcal
Atomic # 6 Polarization: 9.40 SS G_CDS: -0.90 Total: 8.51 kcal
Atomic # 7 Polarization: -41.96 SS G_CDS: 0.10 Total: -41.86 kcal
Atomic # 8 Polarization: -15.56 SS G_CDS: -0.67 Total: -16.23 kcal
Atomic # 14 Polarization: 18.17 SS G_CDS: -5.03 Total: 13.14 kcal
Atomic # 17 Polarization: -1.33 SS G_CDS: -1.36 Total: -2.69 kcal
Total LS contribution 4.21 Total: 4.21 kcal
Total: -26.60 -6.25 -32.85 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001166800947.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 2.955 kcal
(2) G-P(sol) polarization free energy of solvation -26.605 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.650 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.247 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.851 kcal
(6) G-S(sol) free energy of system = (1) + (5) -29.897 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds