Wall clock time and date at job start Mon Mar 30 2020 01:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34779 * 117.00097 * 2 1 4 4 O 1.21525 * 120.00005 * 0.02562 * 3 2 1 5 5 C 1.47308 * 119.99984 * 179.97438 * 3 2 1 6 6 C 1.40028 * 120.61002 * 355.54880 * 5 3 2 7 7 C 1.38427 * 118.35128 * 180.02562 * 6 5 3 8 8 Cl 1.73596 * 120.25173 * 179.97438 * 7 6 5 9 9 C 1.38586 * 119.49087 * 359.97438 * 7 6 5 10 10 N 1.31765 * 121.22175 * 0.02562 * 9 7 6 11 11 C 1.32489 * 121.80099 * 359.97438 * 10 9 7 12 12 N 1.38206 * 119.82522 * 180.02562 * 11 10 9 13 13 C 1.46507 * 119.99706 * 270.68225 * 12 11 10 14 14 C 1.36873 * 120.00411 * 90.68435 * 12 11 10 15 15 H 1.08004 * 119.99942 * 20.79672 * 14 12 11 16 16 C 1.38877 * 120.00137 * 200.80452 * 14 12 11 17 17 N 1.31506 * 119.99882 * 14.66931 * 16 14 12 18 18 Si 1.86801 * 119.99737 * 194.66947 * 16 14 12 19 19 H 1.48504 * 109.46794 * 94.98469 * 18 16 14 20 20 H 1.48505 * 109.46914 * 214.98100 * 18 16 14 21 21 H 1.48494 * 109.47485 * 334.98490 * 18 16 14 22 22 H 1.08997 * 109.47750 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47173 * 300.00356 * 1 2 3 24 24 H 1.09006 * 109.46808 * 59.99786 * 1 2 3 25 25 H 1.07999 * 120.82780 * 0.04447 * 6 5 3 26 26 H 1.07998 * 119.38577 * 179.72047 * 9 7 6 27 27 H 1.09007 * 109.46988 * 94.99868 * 13 12 11 28 28 H 1.08995 * 109.47146 * 214.99449 * 13 12 11 29 29 H 1.08998 * 109.47323 * 334.99982 * 13 12 11 30 30 H 0.97002 * 119.99887 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2009 0.0000 4 8 1.4020 2.2201 0.0005 5 6 3.5349 1.2779 0.0006 6 6 4.3098 0.1154 0.0946 7 6 5.6883 0.2421 0.0915 8 17 6.6963 -1.1665 0.2065 9 6 6.2573 1.5021 -0.0042 10 7 5.5103 2.5840 -0.0919 11 6 4.1870 2.5206 -0.0934 12 7 3.4432 3.6816 -0.1877 13 6 3.0556 4.4039 1.0266 14 6 3.0687 4.1566 -1.4155 15 1 3.0463 3.4931 -2.2674 16 6 2.7177 5.4919 -1.5660 17 7 3.0136 6.3597 -0.6233 18 14 1.8253 6.0550 -3.1074 19 1 0.3618 6.0656 -2.8560 20 1 2.2755 7.4235 -3.4679 21 1 2.1292 5.1238 -4.2235 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 3.8436 -0.8561 0.1676 26 1 7.3329 1.5994 -0.0019 27 1 3.7804 5.1930 1.2269 28 1 2.0683 4.8442 0.8878 29 1 3.0299 3.7120 1.8684 30 1 2.7687 7.2924 -0.7285 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166800956.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:23 Heat of formation + Delta-G solvation = -10.586051 kcal Electronic energy + Delta-G solvation = -18686.671313 eV Core-core repulsion = 15509.981079 eV Total energy + Delta-G solvation = -3176.690234 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.29175 -39.04102 -36.61910 -35.90808 -35.22792 -32.34220 -31.72753 -29.39245 -27.47101 -26.09770 -24.38471 -23.96586 -21.40808 -20.63757 -17.66470 -17.40139 -16.78778 -16.10439 -15.83875 -15.76852 -15.04549 -14.30661 -13.99992 -13.55439 -13.07385 -13.00006 -12.73545 -12.61700 -12.14511 -11.78523 -11.57625 -11.17729 -11.04393 -10.97241 -10.64924 -10.39792 -10.22674 -10.16889 -9.88845 -9.50457 -9.24056 -8.69301 -8.34357 -7.16393 -5.97414 -3.38346 0.93782 1.44663 2.25541 3.06037 3.13297 3.31403 3.36389 3.38363 4.14760 4.25716 4.66843 4.94987 5.05289 5.15104 5.33331 5.38235 5.41489 5.60048 5.64982 5.83982 6.03836 6.25737 6.54604 6.70564 6.82523 7.31497 7.55970 7.63447 8.13607 8.37181 8.50137 8.94799 9.61096 9.98836 11.05868 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.018217 B = 0.007183 C = 0.005777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.671148 B = 3897.250913 C = 4845.841309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.371 6.371 3 C 0.500 3.500 4 O -0.449 6.449 5 C -0.191 4.191 6 C -0.009 4.009 7 C -0.139 4.139 8 Cl -0.074 7.074 9 C 0.153 3.847 10 N -0.484 5.484 11 C 0.458 3.542 12 N -0.524 5.524 13 C 0.174 3.826 14 C -0.237 4.237 15 H 0.072 0.928 16 C 0.014 3.986 17 N -0.885 5.885 18 Si 0.918 3.082 19 H -0.282 1.282 20 H -0.287 1.287 21 H -0.276 1.276 22 H 0.094 0.906 23 H 0.059 0.941 24 H 0.061 0.939 25 H 0.147 0.853 26 H 0.157 0.843 27 H 0.042 0.958 28 H 0.058 0.942 29 H -0.001 1.001 30 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.684 -13.280 2.595 13.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.289 6.289 3 C 0.342 3.658 4 O -0.332 6.332 5 C -0.200 4.200 6 C -0.036 4.036 7 C -0.168 4.168 8 Cl -0.046 7.046 9 C -0.011 4.011 10 N -0.196 5.196 11 C 0.229 3.771 12 N -0.240 5.240 13 C 0.031 3.969 14 C -0.364 4.364 15 H 0.090 0.910 16 C -0.187 4.187 17 N -0.526 5.526 18 Si 0.746 3.254 19 H -0.209 1.209 20 H -0.213 1.213 21 H -0.201 1.201 22 H 0.113 0.887 23 H 0.078 0.922 24 H 0.080 0.920 25 H 0.164 0.836 26 H 0.175 0.825 27 H 0.060 0.940 28 H 0.077 0.923 29 H 0.018 0.982 30 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.785 -11.908 2.558 12.205 hybrid contribution -0.805 -0.588 -0.744 1.244 sum -0.021 -12.496 1.814 12.627 Atomic orbital electron populations 1.23123 0.76886 1.02791 1.02517 1.86517 1.22865 1.33803 1.85762 1.20655 0.88498 0.81502 0.75175 1.90995 1.65548 1.34778 1.41864 1.20599 0.90725 0.94647 1.14006 1.21608 0.91347 0.98854 0.91759 1.21785 0.91907 0.89341 1.13812 1.98331 1.68769 1.40403 1.97053 1.22898 1.00457 0.85810 0.91950 1.68539 1.07754 1.30190 1.13119 1.18535 0.86049 0.88295 0.84244 1.41254 1.53416 1.23971 1.05362 1.20887 1.00610 0.92517 0.82868 1.19125 1.37650 0.92751 0.86853 0.91021 1.25104 0.99975 0.95255 0.98376 1.70054 1.46300 1.02503 1.33731 0.86038 0.79634 0.77911 0.81799 1.20894 1.21296 1.20115 0.88742 0.92208 0.92040 0.83569 0.82537 0.93996 0.92346 0.98242 0.92989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.52 10.57 101.05 1.07 1.59 16 2 O -0.37 -6.02 9.90 -40.71 -0.40 -6.42 16 3 C 0.50 9.99 7.89 34.42 0.27 10.26 16 4 O -0.45 -10.43 13.59 -19.28 -0.26 -10.69 16 5 C -0.19 -3.79 5.91 -104.63 -0.62 -4.41 16 6 C -0.01 -0.14 9.53 -38.84 -0.37 -0.51 16 7 C -0.14 -2.11 6.34 -39.38 -0.25 -2.36 16 8 Cl -0.07 -0.92 28.98 -51.86 -1.50 -2.43 16 9 C 0.15 2.57 10.96 -17.45 -0.19 2.38 16 10 N -0.48 -10.44 10.38 -12.14 -0.13 -10.57 16 11 C 0.46 10.54 6.00 -155.14 -0.93 9.61 16 12 N -0.52 -13.71 1.63 -122.17 -0.20 -13.91 16 13 C 0.17 4.45 8.13 59.85 0.49 4.94 16 14 C -0.24 -6.61 8.86 -15.06 -0.13 -6.74 16 15 H 0.07 2.01 7.87 -52.48 -0.41 1.59 16 16 C 0.01 0.40 5.07 -17.45 -0.09 0.31 16 17 N -0.89 -25.28 10.67 55.49 0.59 -24.69 16 18 Si 0.92 21.81 29.58 -169.99 -5.03 16.79 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 25 H 0.15 1.98 7.70 -52.49 -0.40 1.57 16 26 H 0.16 2.13 8.06 -52.49 -0.42 1.71 16 27 H 0.04 1.13 7.40 -51.93 -0.38 0.74 16 28 H 0.06 1.58 7.23 -51.93 -0.38 1.21 16 29 H 0.00 -0.02 8.00 -51.93 -0.42 -0.44 16 30 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 284.26 15.07 4.28 4.28 Total: -1.00 -30.79 284.26 -6.22 -37.01 By element: Atomic # 1 Polarization: -1.62 SS G_CDS: -2.82 Total: -4.43 kcal Atomic # 6 Polarization: 15.80 SS G_CDS: -0.76 Total: 15.05 kcal Atomic # 7 Polarization: -49.43 SS G_CDS: 0.27 Total: -49.16 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -0.67 Total: -17.11 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.79 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -1.50 Total: -2.43 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.79 -6.22 -37.01 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166800956.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.424 kcal (2) G-P(sol) polarization free energy of solvation -30.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds