Wall clock time and date at job start Mon Mar 30 2020 01:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34779 * 117.00097 * 2 1 4 4 O 1.21525 * 120.00005 * 0.02562 * 3 2 1 5 5 C 1.47308 * 119.99984 * 179.97438 * 3 2 1 6 6 C 1.40028 * 120.61002 * 355.54880 * 5 3 2 7 7 C 1.38427 * 118.35128 * 180.02562 * 6 5 3 8 8 Cl 1.73596 * 120.25173 * 179.97438 * 7 6 5 9 9 C 1.38586 * 119.49087 * 359.97438 * 7 6 5 10 10 N 1.31765 * 121.22175 * 0.02562 * 9 7 6 11 11 C 1.32489 * 121.80099 * 359.97438 * 10 9 7 12 12 N 1.38206 * 119.82522 * 180.02562 * 11 10 9 13 13 C 1.46507 * 119.99706 * 270.68225 * 12 11 10 14 14 C 1.36873 * 120.00411 * 90.68435 * 12 11 10 15 15 H 1.08004 * 119.99942 * 20.79672 * 14 12 11 16 16 C 1.38877 * 120.00137 * 200.80452 * 14 12 11 17 17 N 1.31506 * 119.99882 * 14.66931 * 16 14 12 18 18 Si 1.86801 * 119.99737 * 194.66947 * 16 14 12 19 19 H 1.48504 * 109.46794 * 94.98469 * 18 16 14 20 20 H 1.48505 * 109.46914 * 214.98100 * 18 16 14 21 21 H 1.48494 * 109.47485 * 334.98490 * 18 16 14 22 22 H 1.08997 * 109.47750 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47173 * 300.00356 * 1 2 3 24 24 H 1.09006 * 109.46808 * 59.99786 * 1 2 3 25 25 H 1.07999 * 120.82780 * 0.04447 * 6 5 3 26 26 H 1.07998 * 119.38577 * 179.72047 * 9 7 6 27 27 H 1.09007 * 109.46988 * 94.99868 * 13 12 11 28 28 H 1.08995 * 109.47146 * 214.99449 * 13 12 11 29 29 H 1.08998 * 109.47323 * 334.99982 * 13 12 11 30 30 H 0.97002 * 119.99887 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2009 0.0000 4 8 1.4020 2.2201 0.0005 5 6 3.5349 1.2779 0.0006 6 6 4.3098 0.1154 0.0946 7 6 5.6883 0.2421 0.0915 8 17 6.6963 -1.1665 0.2065 9 6 6.2573 1.5021 -0.0042 10 7 5.5103 2.5840 -0.0919 11 6 4.1870 2.5206 -0.0934 12 7 3.4432 3.6816 -0.1877 13 6 3.0556 4.4039 1.0266 14 6 3.0687 4.1566 -1.4155 15 1 3.0463 3.4931 -2.2674 16 6 2.7177 5.4919 -1.5660 17 7 3.0136 6.3597 -0.6233 18 14 1.8253 6.0550 -3.1074 19 1 0.3618 6.0656 -2.8560 20 1 2.2755 7.4235 -3.4679 21 1 2.1292 5.1238 -4.2235 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 3.8436 -0.8561 0.1676 26 1 7.3329 1.5994 -0.0019 27 1 3.7804 5.1930 1.2269 28 1 2.0683 4.8442 0.8878 29 1 3.0299 3.7120 1.8684 30 1 2.7687 7.2924 -0.7285 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166800956.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:23 Heat of formation + Delta-G solvation = -29.366060 kcal Electronic energy + Delta-G solvation = -18687.485675 eV Core-core repulsion = 15509.981079 eV Total energy + Delta-G solvation = -3177.504596 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.85320 -40.54536 -38.05249 -37.34857 -36.90791 -33.87121 -33.58217 -31.03786 -28.67866 -28.09630 -25.98910 -25.57934 -23.08995 -22.14481 -19.35320 -19.02115 -18.29057 -17.88723 -17.27710 -17.22336 -16.57413 -15.99645 -15.68791 -15.09674 -14.72491 -14.45902 -14.11868 -14.05276 -13.95659 -13.17526 -13.00268 -12.89700 -12.77220 -12.59468 -12.23726 -12.22050 -12.05108 -11.69284 -11.50766 -10.99192 -10.95231 -10.54844 -9.81112 -9.10770 -7.94314 -5.47102 -0.54896 -0.01280 0.94922 1.41182 1.44437 1.52481 1.57037 1.70693 2.38297 2.63895 2.97707 3.21396 3.58965 3.70732 3.80979 3.99243 4.33321 4.38152 4.39979 4.50144 4.65403 4.73410 4.83444 5.14585 5.26355 5.36197 5.48008 5.56256 6.20436 6.83887 6.90183 7.01271 7.70139 8.07214 9.10292 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.018217 B = 0.007183 C = 0.005777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.671148 B = 3897.250913 C = 4845.841309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.359 6.359 3 C 0.504 3.496 4 O -0.487 6.487 5 C -0.195 4.195 6 C 0.005 3.995 7 C -0.115 4.115 8 Cl -0.031 7.031 9 C 0.159 3.841 10 N -0.521 5.521 11 C 0.441 3.559 12 N -0.550 5.550 13 C 0.201 3.799 14 C -0.254 4.254 15 H 0.058 0.942 16 C -0.036 4.036 17 N -0.928 5.928 18 Si 0.974 3.026 19 H -0.284 1.284 20 H -0.285 1.285 21 H -0.270 1.270 22 H 0.142 0.858 23 H 0.058 0.942 24 H 0.053 0.947 25 H 0.183 0.817 26 H 0.193 0.807 27 H 0.014 0.986 28 H 0.031 0.969 29 H 0.014 0.986 30 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.652 -17.220 2.583 17.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.276 6.276 3 C 0.346 3.654 4 O -0.374 6.374 5 C -0.203 4.203 6 C -0.021 4.021 7 C -0.144 4.144 8 Cl -0.002 7.002 9 C -0.002 4.002 10 N -0.234 5.234 11 C 0.214 3.786 12 N -0.270 5.270 13 C 0.057 3.943 14 C -0.383 4.383 15 H 0.076 0.924 16 C -0.233 4.233 17 N -0.572 5.572 18 Si 0.801 3.199 19 H -0.211 1.211 20 H -0.211 1.211 21 H -0.195 1.195 22 H 0.160 0.840 23 H 0.077 0.923 24 H 0.072 0.928 25 H 0.200 0.800 26 H 0.210 0.790 27 H 0.033 0.967 28 H 0.050 0.950 29 H 0.033 0.967 30 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.812 -15.979 2.549 16.282 hybrid contribution -0.926 0.064 -0.615 1.113 sum 0.886 -15.915 1.934 16.057 Atomic orbital electron populations 1.23516 0.74567 1.05739 1.02161 1.86494 1.24970 1.31338 1.84843 1.20758 0.88623 0.81961 0.74053 1.90996 1.66419 1.36438 1.43528 1.20684 0.91387 0.95020 1.13175 1.21928 0.91437 0.98899 0.89882 1.21884 0.92220 0.90376 1.09939 1.98368 1.67441 1.37768 1.96617 1.23478 1.01736 0.85381 0.89636 1.68371 1.07625 1.32862 1.14541 1.18772 0.86646 0.87967 0.85222 1.41101 1.56186 1.25189 1.04514 1.20423 0.98176 0.92053 0.83630 1.19016 1.40106 0.92501 0.86664 0.92392 1.25728 1.01137 0.95314 1.01088 1.70183 1.49058 1.02272 1.35723 0.85172 0.78279 0.77412 0.79039 1.21081 1.21107 1.19497 0.84031 0.92299 0.92842 0.80017 0.79008 0.96747 0.94983 0.96743 0.93622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 10.57 113.37 1.20 1.96 16 2 O -0.36 -10.67 9.90 -56.90 -0.56 -11.23 16 3 C 0.50 19.63 7.89 70.21 0.55 20.18 16 4 O -0.49 -23.09 13.59 19.75 0.27 -22.82 16 5 C -0.19 -7.45 5.91 -19.87 -0.12 -7.57 16 6 C 0.00 0.14 9.53 22.75 0.22 0.35 16 7 C -0.12 -3.00 6.34 22.40 0.14 -2.86 16 8 Cl -0.03 -0.60 28.98 -2.72 -0.08 -0.68 16 9 C 0.16 4.84 10.96 84.79 0.93 5.77 16 10 N -0.52 -22.12 10.38 -192.31 -2.00 -24.11 16 11 C 0.44 20.35 6.00 133.68 0.80 21.15 16 12 N -0.55 -29.93 1.63 -540.43 -0.88 -30.81 16 13 C 0.20 10.86 8.13 127.77 1.04 11.90 16 14 C -0.25 -14.88 8.86 84.06 0.74 -14.14 16 15 H 0.06 3.40 7.87 -2.91 -0.02 3.38 16 16 C -0.04 -2.11 5.07 84.89 0.43 -1.68 16 17 N -0.93 -56.28 10.67 21.66 0.23 -56.05 16 18 Si 0.97 46.88 29.58 68.60 2.03 48.91 16 19 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 20 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 21 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 22 H 0.14 1.90 8.14 -2.39 -0.02 1.88 16 23 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 24 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 25 H 0.18 3.87 7.70 -2.91 -0.02 3.85 16 26 H 0.19 4.42 8.06 -2.91 -0.02 4.39 16 27 H 0.01 0.82 7.40 -2.38 -0.02 0.81 16 28 H 0.03 1.85 7.23 -2.39 -0.02 1.83 16 29 H 0.01 0.69 8.00 -2.39 -0.02 0.67 16 30 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 Total: -1.00 -71.68 284.26 6.12 -65.56 By element: Atomic # 1 Polarization: -4.99 SS G_CDS: 1.17 Total: -3.82 kcal Atomic # 6 Polarization: 29.12 SS G_CDS: 5.94 Total: 35.06 kcal Atomic # 7 Polarization: -108.33 SS G_CDS: -2.64 Total: -110.97 kcal Atomic # 8 Polarization: -33.76 SS G_CDS: -0.29 Total: -34.05 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 2.03 Total: 48.91 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -0.08 Total: -0.68 kcal Total: -71.68 6.12 -65.56 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166800956.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.194 kcal (2) G-P(sol) polarization free energy of solvation -71.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds