Wall clock time and date at job start Mon Mar 30 2020 01:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34772 * 120.00056 * 2 1 4 4 O 1.21476 * 120.00196 * 0.02562 * 3 2 1 5 5 C 1.48469 * 120.00134 * 179.97438 * 3 2 1 6 6 C 1.39477 * 120.50016 * 179.97438 * 5 3 2 7 7 C 1.39025 * 118.41048 * 180.02562 * 6 5 3 8 8 Cl 1.73604 * 120.39702 * 180.02562 * 7 6 5 9 9 N 1.32214 * 119.20883 * 0.02562 * 7 6 5 10 10 C 1.32602 * 120.93884 * 359.97438 * 9 7 6 11 11 N 1.38462 * 119.13186 * 180.02562 * 10 9 7 12 12 C 1.46496 * 120.00193 * 179.97438 * 11 10 9 13 13 C 1.36981 * 120.00087 * 359.97057 * 11 10 9 14 14 H 1.08004 * 119.99496 * 22.49796 * 13 11 10 15 15 C 1.38832 * 120.00299 * 202.49122 * 13 11 10 16 16 N 1.31533 * 120.00085 * 11.09239 * 15 13 11 17 17 Si 1.86807 * 119.99812 * 191.08852 * 15 13 11 18 18 H 1.48493 * 109.47083 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46733 * 120.00507 * 17 15 13 20 20 H 1.48500 * 109.46948 * 239.99878 * 17 15 13 21 21 N 1.32328 * 121.74288 * 359.97438 * 10 9 7 22 22 H 1.08999 * 109.47163 * 300.00012 * 1 2 3 23 23 H 1.09002 * 109.47259 * 59.99901 * 1 2 3 24 24 H 1.08999 * 109.47127 * 179.97438 * 1 2 3 25 25 H 0.97001 * 119.99890 * 180.02562 * 2 1 3 26 26 H 1.07998 * 120.79462 * 0.05238 * 6 5 3 27 27 H 1.09002 * 109.47402 * 93.89697 * 12 11 10 28 28 H 1.09002 * 109.47339 * 213.89989 * 12 11 10 29 29 H 1.09005 * 109.47039 * 333.89909 * 12 11 10 30 30 H 0.96997 * 120.00499 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5315 2.2192 0.0005 5 6 3.6235 1.1672 0.0006 6 6 4.3314 2.3690 0.0000 7 6 5.7207 2.3183 0.0001 8 17 6.6531 3.7827 0.0001 9 7 6.3234 1.1415 0.0001 10 6 5.6219 0.0163 0.0006 11 7 6.2916 -1.1956 0.0011 12 6 5.5356 -2.4504 0.0022 13 6 7.6612 -1.2213 0.0005 14 1 8.2174 -0.3671 0.3576 15 6 8.3343 -2.3453 -0.4590 16 7 7.6770 -3.2924 -1.0922 17 14 10.1735 -2.5124 -0.1779 18 1 10.6727 -1.3205 0.5537 19 1 10.4428 -3.7333 0.6234 20 1 10.8668 -2.6167 -1.4870 21 7 4.2986 0.0208 0.0016 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.9499 -0.8401 -0.0004 26 1 3.8127 3.3162 0.0001 27 1 5.4074 -2.7984 -1.0228 28 1 6.0788 -3.2015 0.5757 29 1 4.5577 -2.2850 0.4546 30 1 8.1472 -4.0775 -1.4136 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166802364.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:30 Heat of formation + Delta-G solvation = 13.774519 kcal Electronic energy + Delta-G solvation = -18136.071513 eV Core-core repulsion = 14992.730384 eV Total energy + Delta-G solvation = -3143.341129 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.062 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.92773 -40.37423 -38.23237 -37.55386 -35.73357 -34.41607 -34.13362 -31.54842 -28.86201 -28.17750 -26.47985 -25.42278 -23.34398 -21.94201 -20.14932 -19.01917 -18.43992 -17.58930 -16.76098 -16.72224 -16.42574 -16.17986 -15.91517 -15.62419 -15.24956 -14.75631 -14.62209 -13.90655 -13.46397 -13.18555 -13.05916 -13.03855 -12.72064 -12.52934 -12.39197 -12.09354 -11.77873 -11.64172 -11.50244 -11.18439 -10.72439 -10.17495 -10.08921 -9.19916 -8.46258 -5.94685 -0.29151 0.15573 0.65011 1.42089 1.42674 1.56327 1.76011 2.03510 2.12879 2.52763 2.74370 3.15483 3.24518 3.91639 4.01532 4.38827 4.43425 4.59987 4.67061 4.71444 4.95089 4.96179 5.16993 5.27631 5.33083 5.39077 5.75668 6.02622 6.34855 6.44970 6.94418 7.06061 7.17013 7.66406 8.52801 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.017364 B = 0.006539 C = 0.004803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.165745 B = 4280.807875 C = 5828.509439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.703 5.703 3 C 0.580 3.420 4 O -0.553 6.553 5 C 0.182 3.818 6 C -0.290 4.290 7 C 0.271 3.729 8 Cl -0.016 7.016 9 N -0.581 5.581 10 C 0.492 3.508 11 N -0.398 5.398 12 C 0.141 3.859 13 C -0.315 4.315 14 H 0.097 0.903 15 C -0.003 4.003 16 N -0.885 5.885 17 Si 1.000 3.000 18 H -0.266 1.266 19 H -0.267 1.267 20 H -0.276 1.276 21 N -0.561 5.561 22 H 0.062 0.938 23 H 0.060 0.940 24 H 0.113 0.887 25 H 0.419 0.581 26 H 0.160 0.840 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.916 2.437 2.123 8.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.354 5.354 3 C 0.363 3.637 4 O -0.430 6.430 5 C 0.028 3.972 6 C -0.323 4.323 7 C 0.090 3.910 8 Cl 0.012 6.988 9 N -0.309 5.309 10 C 0.139 3.861 11 N -0.090 5.090 12 C -0.001 4.001 13 C -0.445 4.445 14 H 0.115 0.885 15 C -0.207 4.207 16 N -0.521 5.521 17 Si 0.823 3.177 18 H -0.190 1.190 19 H -0.192 1.192 20 H -0.201 1.201 21 N -0.291 5.291 22 H 0.080 0.920 23 H 0.079 0.921 24 H 0.131 0.869 25 H 0.256 0.744 26 H 0.178 0.822 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.621 1.745 2.029 8.077 hybrid contribution 0.956 0.414 -0.112 1.048 sum -6.664 2.159 1.917 7.263 Atomic orbital electron populations 1.21855 0.77004 1.04823 1.02334 1.45700 1.09065 1.08351 1.72276 1.17705 0.84819 0.84569 0.76590 1.90727 1.68813 1.32228 1.51254 1.21205 0.94398 0.88621 0.92980 1.21725 0.91963 1.00643 1.18012 1.21677 0.88759 0.88183 0.92335 1.98365 1.74643 1.29684 1.96094 1.66984 1.41858 0.97421 1.24661 1.19050 0.84368 0.86127 0.96507 1.42644 1.05641 1.01107 1.59597 1.21409 0.93863 0.83350 1.01522 1.20035 0.79992 1.03647 1.40813 0.88511 1.26282 1.05070 0.95181 0.94214 1.70149 1.38600 1.09688 1.33621 0.84756 0.75898 0.78785 0.78298 1.19005 1.19183 1.20141 1.67650 1.07322 1.29430 1.24718 0.91975 0.92124 0.86863 0.74405 0.82237 0.93191 0.92207 0.91365 0.91132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.48 10.70 127.77 1.37 2.84 16 2 N -0.70 -18.03 5.71 -486.88 -2.78 -20.81 16 3 C 0.58 19.38 7.83 86.97 0.68 20.06 16 4 O -0.55 -20.34 16.42 -3.64 -0.06 -20.40 16 5 C 0.18 6.95 6.79 41.99 0.29 7.24 16 6 C -0.29 -10.98 9.52 22.76 0.22 -10.77 16 7 C 0.27 11.00 7.34 84.82 0.62 11.62 16 8 Cl -0.02 -0.54 29.15 -2.72 -0.08 -0.62 16 9 N -0.58 -27.43 9.20 -188.72 -1.74 -29.17 16 10 C 0.49 23.38 8.13 261.48 2.13 25.51 16 11 N -0.40 -19.71 3.11 -547.73 -1.70 -21.41 16 12 C 0.14 6.18 8.72 127.77 1.11 7.30 16 13 C -0.32 -16.34 9.29 84.03 0.78 -15.56 16 14 H 0.10 5.20 7.31 -2.91 -0.02 5.17 16 15 C 0.00 -0.16 5.13 84.88 0.44 0.28 16 16 N -0.89 -43.84 10.58 21.65 0.23 -43.61 16 17 Si 1.00 39.17 29.57 68.60 2.03 41.20 16 18 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 19 H -0.27 -9.94 7.11 99.48 0.71 -9.23 16 20 H -0.28 -10.66 7.11 99.48 0.71 -9.96 16 21 N -0.56 -23.21 8.30 -187.04 -1.55 -24.77 16 22 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 23 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.42 10.19 8.21 -92.71 -0.76 9.43 16 26 H 0.16 5.46 7.73 -2.91 -0.02 5.43 16 27 H 0.05 2.30 7.44 -2.39 -0.02 2.28 16 28 H 0.06 2.68 7.17 -2.39 -0.02 2.66 16 29 H 0.07 2.59 7.21 -2.38 -0.02 2.57 16 30 H 0.28 12.86 8.31 -92.71 -0.77 12.09 16 Total: -1.00 -59.34 284.62 2.41 -56.93 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: 0.43 Total: 14.14 kcal Atomic # 6 Polarization: 40.89 SS G_CDS: 7.63 Total: 48.52 kcal Atomic # 7 Polarization: -132.23 SS G_CDS: -7.54 Total: -139.77 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -0.06 Total: -20.40 kcal Atomic # 14 Polarization: 39.17 SS G_CDS: 2.03 Total: 41.20 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -0.08 Total: -0.62 kcal Total: -59.34 2.41 -56.93 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166802364.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.704 kcal (2) G-P(sol) polarization free energy of solvation -59.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds