Wall clock time and date at job start Mon Mar 30 2020 00:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29492 * 1 3 3 Si 1.86794 * 120.00258 * 2 1 4 4 H 1.48498 * 109.47367 * 270.73906 * 3 2 1 5 5 H 1.48507 * 109.46987 * 30.73488 * 3 2 1 6 6 H 1.48497 * 109.47262 * 150.73628 * 3 2 1 7 7 C 1.46589 * 119.99661 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00315 * 349.32904 * 7 2 1 9 9 C 1.39522 * 119.99954 * 169.32416 * 7 2 1 10 10 C 1.41753 * 120.18304 * 325.32739 * 9 7 2 11 11 C 1.35797 * 119.79756 * 180.02562 * 10 9 7 12 12 C 1.40183 * 120.19843 * 0.02562 * 11 10 9 13 13 N 1.37658 * 119.81488 * 179.97438 * 12 11 10 14 14 C 1.46496 * 119.99692 * 359.97438 * 13 12 11 15 15 C 1.53005 * 109.46548 * 179.97438 * 14 13 12 16 16 Cl 1.80310 * 109.46760 * 180.02562 * 15 14 13 17 17 C 1.40149 * 120.37175 * 0.24758 * 12 11 10 18 18 C 1.35829 * 120.19226 * 359.44138 * 17 12 11 19 19 N 1.48017 * 120.09700 * 180.27038 * 18 17 12 20 20 O 1.31699 * 120.00029 * 354.26370 * 19 18 17 21 21 O 1.31699 * 119.99544 * 174.25580 * 19 18 17 22 22 H 0.97001 * 119.99692 * 359.97438 * 1 2 3 23 23 H 1.07995 * 120.10126 * 359.97438 * 10 9 7 24 24 H 1.08002 * 119.90383 * 179.97438 * 11 10 9 25 25 H 0.97000 * 119.99699 * 179.97438 * 13 12 11 26 26 H 1.09002 * 109.47349 * 60.00457 * 14 13 12 27 27 H 1.08994 * 109.47406 * 299.99457 * 14 13 12 28 28 H 1.08997 * 109.47407 * 299.99644 * 15 14 13 29 29 H 1.09001 * 109.47292 * 60.00422 * 15 14 13 30 30 H 1.07999 * 119.90183 * 179.73113 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2949 0.0000 0.0000 3 14 2.2290 1.6176 0.0000 4 1 2.4609 2.0554 -1.3999 5 1 1.4343 2.6481 0.7156 6 1 3.5342 1.4356 0.6844 7 6 2.0278 -1.2695 -0.0006 8 1 1.5018 -2.1969 0.1722 9 6 3.4049 -1.2800 -0.2244 10 6 3.9890 -0.3461 -1.1167 11 6 5.3301 -0.3636 -1.3292 12 6 6.1363 -1.3018 -0.6696 13 7 7.4949 -1.3128 -0.8912 14 6 8.0942 -0.3462 -1.8146 15 6 9.6061 -0.5721 -1.8788 16 17 10.3439 0.6180 -3.0147 17 6 5.5663 -2.2322 0.2098 18 6 4.2274 -2.2246 0.4386 19 7 3.6283 -3.2044 1.3724 20 8 4.3734 -4.1561 1.8956 21 8 2.3503 -3.1244 1.6801 22 1 -0.4850 0.8401 0.0004 23 1 3.3692 0.3765 -1.6266 24 1 5.7769 0.3468 -2.0089 25 1 8.0553 -1.9605 -0.4360 26 1 7.8931 0.6656 -1.4626 27 1 7.6644 -0.4776 -2.8076 28 1 10.0357 -0.4404 -0.8857 29 1 9.8077 -1.5839 -2.2306 30 1 6.1940 -2.9544 0.7106 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167815515.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:22 Heat of formation + Delta-G solvation = 26.678508 kcal Electronic energy + Delta-G solvation = -17927.174678 eV Core-core repulsion = 14752.100356 eV Total energy + Delta-G solvation = -3175.074321 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.06371 -37.08030 -36.36156 -35.48602 -34.07600 -32.52269 -31.33358 -30.57991 -28.81280 -25.74684 -23.94693 -23.07809 -21.88144 -20.10954 -18.34835 -17.42205 -16.48762 -15.84482 -15.64106 -15.48636 -15.25698 -14.29603 -14.18308 -13.89300 -13.38486 -13.20948 -13.07269 -12.79297 -12.69028 -12.19486 -11.52337 -11.43126 -10.96826 -10.90365 -10.81032 -10.67518 -10.39242 -9.96544 -9.49199 -9.37124 -9.05224 -8.94109 -8.50311 -7.71606 -7.19068 -4.88125 0.87742 1.84369 2.23969 2.56769 2.65956 2.82852 2.85724 3.12864 3.41961 3.87192 3.95563 4.43913 4.56743 4.72530 4.98669 5.44796 5.54519 5.56705 5.62058 5.89302 6.11289 6.20294 6.42699 6.63046 6.83043 7.02554 7.15734 7.38174 7.66179 7.77526 7.96392 8.11231 8.21252 8.81197 9.16140 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.019130 B = 0.005484 C = 0.004370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.281441 B = 5104.191852 C = 6406.456162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.710 5.710 2 C 0.061 3.939 3 Si 0.920 3.080 4 H -0.255 1.255 5 H -0.274 1.274 6 H -0.233 1.233 7 C -0.297 4.297 8 H 0.136 0.864 9 C 0.044 3.956 10 C -0.156 4.156 11 C -0.107 4.107 12 C 0.103 3.897 13 N -0.750 5.750 14 C 0.124 3.876 15 C -0.042 4.042 16 Cl -0.175 7.175 17 C -0.102 4.102 18 C -0.063 4.063 19 N 0.036 4.964 20 O -0.363 6.363 21 O -0.278 6.278 22 H 0.308 0.692 23 H 0.121 0.879 24 H 0.113 0.887 25 H 0.394 0.606 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.912 7.386 -6.775 15.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.329 5.329 2 C -0.172 4.172 3 Si 0.743 3.257 4 H -0.180 1.180 5 H -0.200 1.200 6 H -0.156 1.156 7 C -0.324 4.324 8 H 0.153 0.847 9 C 0.038 3.962 10 C -0.176 4.176 11 C -0.128 4.128 12 C 0.002 3.998 13 N -0.387 5.387 14 C -0.001 4.001 15 C -0.106 4.106 16 Cl -0.149 7.149 17 C -0.127 4.127 18 C -0.167 4.167 19 N 0.451 4.549 20 O -0.503 6.503 21 O -0.436 6.436 22 H 0.121 0.879 23 H 0.138 0.862 24 H 0.131 0.869 25 H 0.228 0.772 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.116 0.884 29 H 0.117 0.883 30 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 11.882 7.724 -7.063 15.834 hybrid contribution 0.253 0.146 0.334 0.444 sum 12.135 7.870 -6.729 15.952 Atomic orbital electron populations 1.68931 1.09420 1.33080 1.21511 1.28214 0.95087 1.02950 0.90966 0.86149 0.81764 0.77380 0.80422 1.18001 1.20011 1.15588 1.22066 0.90858 0.96003 1.23519 0.84664 1.17145 0.93039 0.92547 0.93462 1.20850 0.94528 1.01521 1.00685 1.20377 0.93602 0.98382 1.00410 1.16884 0.83281 0.98634 1.00997 1.43386 1.04565 1.39319 1.51478 1.21361 0.89927 0.94021 0.94826 1.24440 0.95445 0.94731 0.95941 1.98725 1.84815 1.64177 1.67141 1.19428 0.93064 0.99829 1.00419 1.19181 0.91782 1.01532 1.04184 1.49616 1.01906 1.01595 1.01811 1.96055 1.60448 1.30195 1.63576 1.96079 0.94324 1.81571 1.71671 0.87924 0.86190 0.86858 0.77244 0.91772 0.91705 0.88373 0.88347 0.86095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -15.55 13.89 55.99 0.78 -14.77 16 2 C 0.06 1.34 5.64 -15.17 -0.09 1.26 16 3 Si 0.92 16.66 24.61 -169.99 -4.18 12.48 16 4 H -0.25 -4.19 6.71 56.52 0.38 -3.81 16 5 H -0.27 -4.73 7.11 56.52 0.40 -4.33 16 6 H -0.23 -4.45 6.84 56.52 0.39 -4.07 16 7 C -0.30 -7.32 8.42 -35.74 -0.30 -7.63 16 8 H 0.14 3.74 5.96 -52.48 -0.31 3.43 16 9 C 0.04 1.03 5.13 -106.75 -0.55 0.48 16 10 C -0.16 -3.09 7.09 -39.11 -0.28 -3.37 16 11 C -0.11 -1.87 9.21 -39.73 -0.37 -2.23 16 12 C 0.10 1.82 6.67 -83.80 -0.56 1.26 16 13 N -0.75 -9.91 5.65 -58.49 -0.33 -10.24 16 14 C 0.12 1.30 5.00 -4.04 -0.02 1.28 16 15 C -0.04 -0.33 6.77 37.16 0.25 -0.08 16 16 Cl -0.17 -1.63 29.15 -51.86 -1.51 -3.14 16 17 C -0.10 -2.17 9.35 -39.73 -0.37 -2.54 16 18 C -0.06 -1.57 6.89 -79.48 -0.55 -2.12 16 19 N 0.04 1.00 4.98 34.19 0.17 1.17 16 20 O -0.36 -10.42 19.14 -31.57 -0.60 -11.02 16 21 O -0.28 -8.21 16.26 -31.57 -0.51 -8.72 16 22 H 0.31 5.76 8.27 -40.82 -0.34 5.42 16 23 H 0.12 2.18 4.84 -52.49 -0.25 1.93 16 24 H 0.11 1.62 6.66 -52.49 -0.35 1.27 16 25 H 0.39 4.54 8.46 -40.82 -0.35 4.19 16 26 H 0.06 0.69 7.91 -51.93 -0.41 0.28 16 27 H 0.06 0.69 7.91 -51.93 -0.41 0.28 16 28 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.12 2.49 7.55 -52.49 -0.40 2.09 16 LS Contribution 278.31 15.07 4.19 4.19 Total: -1.00 -29.22 278.31 -7.32 -36.54 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -2.49 Total: 7.20 kcal Atomic # 6 Polarization: -10.87 SS G_CDS: -2.82 Total: -13.69 kcal Atomic # 7 Polarization: -24.46 SS G_CDS: 0.62 Total: -23.84 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -1.12 Total: -19.74 kcal Atomic # 14 Polarization: 16.66 SS G_CDS: -4.18 Total: 12.48 kcal Atomic # 17 Polarization: -1.63 SS G_CDS: -1.51 Total: -3.14 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -29.22 -7.32 -36.54 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167815515.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.215 kcal (2) G-P(sol) polarization free energy of solvation -29.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds