Wall clock time and date at job start Mon Mar 30 2020 00:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29492 * 1 3 3 Si 1.86794 * 120.00258 * 2 1 4 4 H 1.48498 * 109.47367 * 270.73906 * 3 2 1 5 5 H 1.48507 * 109.46987 * 30.73488 * 3 2 1 6 6 H 1.48497 * 109.47262 * 150.73628 * 3 2 1 7 7 C 1.46589 * 119.99661 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00315 * 349.32904 * 7 2 1 9 9 C 1.39522 * 119.99954 * 169.32416 * 7 2 1 10 10 C 1.41753 * 120.18304 * 325.32739 * 9 7 2 11 11 C 1.35797 * 119.79756 * 180.02562 * 10 9 7 12 12 C 1.40183 * 120.19843 * 0.02562 * 11 10 9 13 13 N 1.37658 * 119.81488 * 179.97438 * 12 11 10 14 14 C 1.46496 * 119.99692 * 359.97438 * 13 12 11 15 15 C 1.53005 * 109.46548 * 179.97438 * 14 13 12 16 16 Cl 1.80310 * 109.46760 * 180.02562 * 15 14 13 17 17 C 1.40149 * 120.37175 * 0.24758 * 12 11 10 18 18 C 1.35829 * 120.19226 * 359.44138 * 17 12 11 19 19 N 1.48017 * 120.09700 * 180.27038 * 18 17 12 20 20 O 1.31699 * 120.00029 * 354.26370 * 19 18 17 21 21 O 1.31699 * 119.99544 * 174.25580 * 19 18 17 22 22 H 0.97001 * 119.99692 * 359.97438 * 1 2 3 23 23 H 1.07995 * 120.10126 * 359.97438 * 10 9 7 24 24 H 1.08002 * 119.90383 * 179.97438 * 11 10 9 25 25 H 0.97000 * 119.99699 * 179.97438 * 13 12 11 26 26 H 1.09002 * 109.47349 * 60.00457 * 14 13 12 27 27 H 1.08994 * 109.47406 * 299.99457 * 14 13 12 28 28 H 1.08997 * 109.47407 * 299.99644 * 15 14 13 29 29 H 1.09001 * 109.47292 * 60.00422 * 15 14 13 30 30 H 1.07999 * 119.90183 * 179.73113 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2949 0.0000 0.0000 3 14 2.2290 1.6176 0.0000 4 1 2.4609 2.0554 -1.3999 5 1 1.4343 2.6481 0.7156 6 1 3.5342 1.4356 0.6844 7 6 2.0278 -1.2695 -0.0006 8 1 1.5018 -2.1969 0.1722 9 6 3.4049 -1.2800 -0.2244 10 6 3.9890 -0.3461 -1.1167 11 6 5.3301 -0.3636 -1.3292 12 6 6.1363 -1.3018 -0.6696 13 7 7.4949 -1.3128 -0.8912 14 6 8.0942 -0.3462 -1.8146 15 6 9.6061 -0.5721 -1.8788 16 17 10.3439 0.6180 -3.0147 17 6 5.5663 -2.2322 0.2098 18 6 4.2274 -2.2246 0.4386 19 7 3.6283 -3.2044 1.3724 20 8 4.3734 -4.1561 1.8956 21 8 2.3503 -3.1244 1.6801 22 1 -0.4850 0.8401 0.0004 23 1 3.3692 0.3765 -1.6266 24 1 5.7769 0.3468 -2.0089 25 1 8.0553 -1.9605 -0.4360 26 1 7.8931 0.6656 -1.4626 27 1 7.6644 -0.4776 -2.8076 28 1 10.0357 -0.4404 -0.8857 29 1 9.8077 -1.5839 -2.2306 30 1 6.1940 -2.9544 0.7106 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167815515.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:21 Heat of formation + Delta-G solvation = 5.888525 kcal Electronic energy + Delta-G solvation = -17928.076199 eV Core-core repulsion = 14752.100356 eV Total energy + Delta-G solvation = -3175.975843 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.67286 -38.49602 -37.42943 -36.78072 -35.75676 -34.23041 -32.74664 -32.17595 -30.20117 -27.36674 -25.68407 -24.17710 -23.42723 -21.63691 -20.18090 -18.91062 -18.11181 -17.49307 -16.80344 -16.65328 -16.40542 -15.98120 -15.81803 -15.37205 -14.77497 -14.59752 -14.28596 -14.00645 -13.73898 -13.53479 -13.10769 -12.80995 -12.69739 -12.37983 -11.92168 -11.53062 -11.46965 -11.31312 -11.20997 -11.02729 -10.93885 -10.72323 -10.16071 -9.50960 -8.71209 -6.76130 -1.05906 0.62444 0.90014 1.14947 1.17057 1.37368 1.48735 1.55792 1.93596 2.20716 2.78195 2.97169 3.66954 3.85967 3.97836 4.09397 4.16242 4.40421 4.42720 4.58602 4.77646 4.81302 4.92699 5.03405 5.21637 5.34392 5.38218 5.60234 5.86769 5.98844 6.27302 6.49706 6.82641 7.06802 7.41440 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.019130 B = 0.005484 C = 0.004370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.281441 B = 5104.191852 C = 6406.456162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.711 5.711 2 C 0.016 3.984 3 Si 0.974 3.026 4 H -0.198 1.198 5 H -0.254 1.254 6 H -0.244 1.244 7 C -0.245 4.245 8 H 0.090 0.910 9 C 0.000 4.000 10 C -0.126 4.126 11 C -0.105 4.105 12 C 0.185 3.815 13 N -0.730 5.730 14 C 0.113 3.887 15 C -0.036 4.036 16 Cl -0.182 7.182 17 C -0.187 4.187 18 C -0.031 4.031 19 N 0.019 4.981 20 O -0.484 6.484 21 O -0.421 6.421 22 H 0.334 0.666 23 H 0.156 0.844 24 H 0.173 0.827 25 H 0.405 0.595 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.084 13.829 -11.264 22.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.333 5.333 2 C -0.216 4.216 3 Si 0.788 3.212 4 H -0.120 1.120 5 H -0.179 1.179 6 H -0.168 1.168 7 C -0.275 4.275 8 H 0.108 0.892 9 C -0.005 4.005 10 C -0.145 4.145 11 C -0.125 4.125 12 C 0.077 3.923 13 N -0.364 5.364 14 C -0.011 4.011 15 C -0.100 4.100 16 Cl -0.155 7.155 17 C -0.214 4.214 18 C -0.145 4.145 19 N 0.383 4.617 20 O -0.593 6.593 21 O -0.541 6.541 22 H 0.149 0.851 23 H 0.173 0.827 24 H 0.190 0.810 25 H 0.241 0.759 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.130 0.870 29 H 0.129 0.871 30 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 13.946 13.886 -11.339 22.713 hybrid contribution -0.438 -1.088 1.076 1.592 sum 13.508 12.798 -10.263 21.250 Atomic orbital electron populations 1.68865 1.10768 1.36138 1.17481 1.29303 0.96091 1.05231 0.90932 0.85453 0.79843 0.72228 0.83687 1.12039 1.17912 1.16763 1.22553 0.92284 0.96398 1.16282 0.89218 1.17547 0.92417 0.94850 0.95713 1.21225 0.95998 0.99182 0.98124 1.20965 0.92549 0.98549 1.00479 1.17179 0.85163 0.94597 0.95362 1.43756 1.03060 1.39250 1.50377 1.21698 0.91499 0.93483 0.94392 1.24420 0.93722 0.95171 0.96643 1.98737 1.84796 1.64545 1.67465 1.19327 0.91944 1.04125 1.06008 1.19862 0.93461 0.99059 1.02147 1.49481 1.01244 1.04291 1.06664 1.95902 1.60878 1.33810 1.68666 1.95930 0.96483 1.84331 1.77318 0.85132 0.82724 0.81003 0.75907 0.90323 0.90338 0.87038 0.87061 0.87154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -29.46 13.89 23.22 0.32 -29.13 16 2 C 0.02 0.68 5.64 87.22 0.49 1.17 16 3 Si 0.97 28.32 24.61 68.60 1.69 30.01 16 4 H -0.20 -4.24 6.71 99.48 0.67 -3.57 16 5 H -0.25 -6.83 7.11 99.48 0.71 -6.12 16 6 H -0.24 -7.74 6.84 99.48 0.68 -7.06 16 7 C -0.24 -12.33 8.42 24.76 0.21 -12.12 16 8 H 0.09 5.43 5.96 -2.91 -0.02 5.42 16 9 C 0.00 0.01 5.13 -21.24 -0.11 -0.09 16 10 C -0.13 -4.25 7.09 22.57 0.16 -4.09 16 11 C -0.11 -2.91 9.21 22.18 0.20 -2.71 16 12 C 0.18 5.76 6.67 39.17 0.26 6.02 16 13 N -0.73 -15.39 5.65 -338.95 -1.92 -17.30 16 14 C 0.11 1.56 5.00 86.38 0.43 1.99 16 15 C -0.04 -0.37 6.77 71.98 0.49 0.12 16 16 Cl -0.18 -2.50 29.15 -2.72 -0.08 -2.58 16 17 C -0.19 -8.14 9.35 22.17 0.21 -7.93 16 18 C -0.03 -1.64 6.89 36.68 0.25 -1.38 16 19 N 0.02 1.23 4.98 -45.75 -0.23 1.00 16 20 O -0.48 -33.07 19.14 3.52 0.07 -33.00 16 21 O -0.42 -29.20 16.26 3.52 0.06 -29.15 16 22 H 0.33 11.15 8.27 -92.71 -0.77 10.38 16 23 H 0.16 4.23 4.84 -2.91 -0.01 4.21 16 24 H 0.17 3.03 6.66 -2.91 -0.02 3.01 16 25 H 0.41 7.67 8.46 -92.71 -0.78 6.88 16 26 H 0.08 1.02 7.91 -2.39 -0.02 1.00 16 27 H 0.08 1.03 7.91 -2.39 -0.02 1.01 16 28 H 0.11 0.92 8.14 -2.39 -0.02 0.91 16 29 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.11 4.98 7.55 -2.91 -0.02 4.95 16 Total: -1.00 -80.12 278.31 2.86 -77.26 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: 0.35 Total: 21.93 kcal Atomic # 6 Polarization: -21.63 SS G_CDS: 2.60 Total: -19.03 kcal Atomic # 7 Polarization: -43.62 SS G_CDS: -1.82 Total: -45.44 kcal Atomic # 8 Polarization: -62.27 SS G_CDS: 0.12 Total: -62.15 kcal Atomic # 14 Polarization: 28.32 SS G_CDS: 1.69 Total: 30.01 kcal Atomic # 17 Polarization: -2.50 SS G_CDS: -0.08 Total: -2.58 kcal Total: -80.12 2.86 -77.26 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167815515.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.149 kcal (2) G-P(sol) polarization free energy of solvation -80.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds