Wall clock time and date at job start Mon Mar 30 2020 01:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99852 * 2 1 4 4 H 1.48501 * 109.47127 * 269.99420 * 3 2 1 5 5 H 1.48489 * 109.47585 * 29.99705 * 3 2 1 6 6 H 1.48500 * 109.47065 * 149.99770 * 3 2 1 7 7 C 1.37875 * 120.00005 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99837 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00000 * 180.02562 * 7 2 1 10 10 C 1.53003 * 109.46809 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.46621 * 179.97438 * 10 9 7 12 12 C 1.38505 * 119.99639 * 180.02562 * 11 10 9 13 13 C 1.39892 * 120.50775 * 0.02562 * 12 11 10 14 14 C 1.39033 * 118.22528 * 179.97438 * 13 12 11 15 15 C 1.48434 * 120.50392 * 179.97438 * 14 13 12 16 16 N 1.34778 * 120.00249 * 179.97438 * 15 14 13 17 17 O 1.21480 * 120.00046 * 359.97438 * 15 14 13 18 18 N 1.33341 * 118.99964 * 359.97438 * 14 13 12 19 19 C 1.31664 * 120.91844 * 0.02562 * 18 14 13 20 20 Cl 1.73596 * 119.01566 * 180.28037 * 19 18 14 21 21 N 1.32004 * 121.97229 * 359.97438 * 19 18 14 22 22 H 0.97004 * 119.99752 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.47141 * 59.99637 * 9 7 2 24 24 H 1.08999 * 109.46980 * 299.99481 * 9 7 2 25 25 H 1.09004 * 109.47200 * 60.00121 * 10 9 7 26 26 H 1.08990 * 109.47441 * 300.00022 * 10 9 7 27 27 H 0.96994 * 120.00608 * 0.02562 * 11 10 9 28 28 H 1.07999 * 120.88912 * 359.95719 * 13 12 11 29 29 H 0.96994 * 119.99704 * 0.02562 * 16 15 14 30 30 H 0.96997 * 119.99919 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1940 0.0011 10 6 4.0215 -2.6366 0.0023 11 7 5.4864 -2.6365 0.0022 12 6 6.1789 -3.8361 0.0027 13 6 5.4902 -5.0537 0.0026 14 6 6.2327 -6.2291 0.0025 15 6 5.5539 -7.5491 0.0030 16 7 6.2836 -8.6823 0.0024 17 8 4.3405 -7.6082 0.0040 18 7 7.5640 -6.1528 0.0019 19 6 8.1747 -4.9864 0.0020 20 17 9.9102 -4.9446 -0.0062 21 7 7.5069 -3.8477 0.0021 22 1 -0.4850 0.8401 -0.0004 23 1 3.8745 -0.6799 0.8911 24 1 3.8752 -0.6805 -0.8889 25 1 3.6584 -3.1510 -0.8875 26 1 3.6578 -3.1498 0.8924 27 1 5.9715 -1.7966 0.0019 28 1 4.4105 -5.0800 0.0029 29 1 7.2524 -8.6351 0.0019 30 1 5.8400 -9.5448 0.0031 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186089521.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:52 Heat of formation + Delta-G solvation = 1.469719 kcal Electronic energy + Delta-G solvation = -17383.152215 eV Core-core repulsion = 14239.277510 eV Total energy + Delta-G solvation = -3143.874705 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.062 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.26913 -39.29122 -37.26354 -36.58101 -34.23954 -33.49204 -32.84050 -31.40498 -29.63532 -25.59932 -25.47817 -23.32002 -21.30959 -20.97256 -18.70146 -18.33443 -17.22856 -16.80828 -16.03761 -15.83953 -15.58061 -15.12767 -14.76938 -14.41096 -14.25394 -14.18855 -14.00490 -12.72532 -12.35860 -11.72979 -11.64859 -11.64575 -11.13195 -11.08922 -10.71343 -10.49449 -10.33268 -10.03776 -9.95402 -9.78568 -9.56169 -9.46581 -8.71092 -8.16069 -6.20482 -4.22419 0.38024 0.95681 1.22183 2.59538 2.97135 3.10031 3.19996 3.28772 3.28802 3.66610 4.06766 4.29859 4.47292 4.62869 5.12353 5.19341 5.24546 5.64911 5.79648 5.85298 6.24668 6.37595 6.51362 6.76335 6.99138 7.03275 7.16996 7.43474 7.55428 7.86062 7.96628 8.31095 8.81736 9.38801 10.92053 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.021206 B = 0.004291 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.074909 B = 6523.285570 C = 7822.911164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.073 3.927 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.528 4.528 8 H 0.078 0.922 9 C -0.021 4.021 10 C 0.125 3.875 11 N -0.687 5.687 12 C 0.458 3.542 13 C -0.221 4.221 14 C 0.161 3.839 15 C 0.582 3.418 16 N -0.832 5.832 17 O -0.520 6.520 18 N -0.541 5.541 19 C 0.409 3.591 20 Cl 0.020 6.980 21 N -0.564 5.564 22 H 0.266 0.734 23 H 0.026 0.974 24 H 0.021 0.979 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.411 0.589 28 H 0.167 0.833 29 H 0.413 0.587 30 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.647 -12.803 0.019 21.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.130 4.130 3 Si 0.708 3.292 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.190 1.190 7 C -0.566 4.566 8 H 0.096 0.904 9 C -0.058 4.058 10 C 0.003 3.997 11 N -0.316 5.316 12 C 0.210 3.790 13 C -0.252 4.252 14 C 0.020 3.980 15 C 0.364 3.636 16 N -0.396 5.396 17 O -0.394 6.394 18 N -0.268 5.268 19 C 0.112 3.888 20 Cl 0.047 6.953 21 N -0.293 5.293 22 H 0.076 0.924 23 H 0.044 0.956 24 H 0.040 0.960 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.247 0.753 28 H 0.184 0.816 29 H 0.243 0.757 30 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 17.494 -12.529 0.021 21.517 hybrid contribution 0.247 1.023 -0.015 1.053 sum 17.740 -11.505 0.005 21.145 Atomic orbital electron populations 1.69892 1.06294 1.27248 1.49765 1.24969 0.94756 0.99160 0.94131 0.86775 0.80287 0.83550 0.78636 1.20122 1.21137 1.19047 1.20829 0.88212 0.95051 1.52537 0.90436 1.19783 0.98190 0.90468 0.97402 1.21913 0.74053 1.01941 1.01824 1.45281 1.07975 1.04356 1.73958 1.18411 0.86451 0.87728 0.86400 1.22345 1.03869 0.90887 1.08058 1.20957 0.88244 0.94105 0.94732 1.17690 0.86201 0.83472 0.76270 1.43589 1.11991 1.07808 1.76245 1.90888 1.12856 1.86774 1.48853 1.67666 1.09591 1.28152 1.21360 1.22256 0.89189 0.84243 0.93086 1.98425 1.02380 1.98310 1.96142 1.67225 1.07526 1.30749 1.23829 0.92381 0.95613 0.96038 0.91188 0.91160 0.75264 0.81597 0.75652 0.76177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.37 13.96 55.43 0.77 -25.60 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 3 Si 0.88 20.44 27.47 -169.99 -4.67 15.77 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 6 H -0.27 -5.85 6.54 56.52 0.37 -5.48 16 7 C -0.53 -13.94 9.66 -34.44 -0.33 -14.27 16 8 H 0.08 2.20 7.99 -52.49 -0.42 1.78 16 9 C -0.02 -0.44 4.16 -27.88 -0.12 -0.55 16 10 C 0.12 2.17 4.87 -4.04 -0.02 2.15 16 11 N -0.69 -10.49 5.71 -60.25 -0.34 -10.83 16 12 C 0.46 6.94 7.71 -154.87 -1.19 5.74 16 13 C -0.22 -3.25 8.94 -38.67 -0.35 -3.60 16 14 C 0.16 2.19 6.78 -82.72 -0.56 1.63 16 15 C 0.58 7.40 8.10 -12.06 -0.10 7.30 16 16 N -0.83 -6.89 8.87 30.67 0.27 -6.62 16 17 O -0.52 -8.32 17.25 5.38 0.09 -8.23 16 18 N -0.54 -7.01 9.66 -8.30 -0.08 -7.09 16 19 C 0.41 5.59 8.17 -92.09 -0.75 4.83 16 20 Cl 0.02 0.22 29.26 -51.86 -1.52 -1.30 16 21 N -0.56 -8.41 10.42 -10.88 -0.11 -8.53 16 22 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 23 H 0.03 0.54 7.20 -51.93 -0.37 0.17 16 24 H 0.02 0.45 7.57 -51.93 -0.39 0.05 16 25 H 0.07 1.22 7.97 -51.93 -0.41 0.80 16 26 H 0.07 1.22 7.98 -51.93 -0.41 0.81 16 27 H 0.41 5.88 8.60 -40.82 -0.35 5.53 16 28 H 0.17 2.47 6.54 -52.49 -0.34 2.13 16 29 H 0.41 2.81 8.21 -40.82 -0.34 2.47 16 30 H 0.41 2.51 8.93 -40.82 -0.36 2.14 16 LS Contribution 286.50 15.07 4.32 4.32 Total: -1.00 -30.36 286.50 -7.36 -37.71 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -2.57 Total: 5.26 kcal Atomic # 6 Polarization: 8.66 SS G_CDS: -3.52 Total: 5.14 kcal Atomic # 7 Polarization: -59.18 SS G_CDS: 0.51 Total: -58.67 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: 0.09 Total: -8.23 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.67 Total: 15.77 kcal Atomic # 17 Polarization: 0.22 SS G_CDS: -1.52 Total: -1.30 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -30.36 -7.36 -37.71 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186089521.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.185 kcal (2) G-P(sol) polarization free energy of solvation -30.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds