Wall clock time and date at job start Mon Mar 30 2020 01:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99852 * 2 1 4 4 H 1.48501 * 109.47127 * 269.99420 * 3 2 1 5 5 H 1.48489 * 109.47585 * 29.99705 * 3 2 1 6 6 H 1.48500 * 109.47065 * 149.99770 * 3 2 1 7 7 C 1.37875 * 120.00005 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99837 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00000 * 180.02562 * 7 2 1 10 10 C 1.53003 * 109.46809 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.46621 * 179.97438 * 10 9 7 12 12 C 1.38505 * 119.99639 * 180.02562 * 11 10 9 13 13 C 1.39892 * 120.50775 * 0.02562 * 12 11 10 14 14 C 1.39033 * 118.22528 * 179.97438 * 13 12 11 15 15 C 1.48434 * 120.50392 * 179.97438 * 14 13 12 16 16 N 1.34778 * 120.00249 * 179.97438 * 15 14 13 17 17 O 1.21480 * 120.00046 * 359.97438 * 15 14 13 18 18 N 1.33341 * 118.99964 * 359.97438 * 14 13 12 19 19 C 1.31664 * 120.91844 * 0.02562 * 18 14 13 20 20 Cl 1.73596 * 119.01566 * 180.28037 * 19 18 14 21 21 N 1.32004 * 121.97229 * 359.97438 * 19 18 14 22 22 H 0.97004 * 119.99752 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.47141 * 59.99637 * 9 7 2 24 24 H 1.08999 * 109.46980 * 299.99481 * 9 7 2 25 25 H 1.09004 * 109.47200 * 60.00121 * 10 9 7 26 26 H 1.08990 * 109.47441 * 300.00022 * 10 9 7 27 27 H 0.96994 * 120.00608 * 0.02562 * 11 10 9 28 28 H 1.07999 * 120.88912 * 359.95719 * 13 12 11 29 29 H 0.96994 * 119.99704 * 0.02562 * 16 15 14 30 30 H 0.96997 * 119.99919 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1940 0.0011 10 6 4.0215 -2.6366 0.0023 11 7 5.4864 -2.6365 0.0022 12 6 6.1789 -3.8361 0.0027 13 6 5.4902 -5.0537 0.0026 14 6 6.2327 -6.2291 0.0025 15 6 5.5539 -7.5491 0.0030 16 7 6.2836 -8.6823 0.0024 17 8 4.3405 -7.6082 0.0040 18 7 7.5640 -6.1528 0.0019 19 6 8.1747 -4.9864 0.0020 20 17 9.9102 -4.9446 -0.0062 21 7 7.5069 -3.8477 0.0021 22 1 -0.4850 0.8401 -0.0004 23 1 3.8745 -0.6799 0.8911 24 1 3.8752 -0.6805 -0.8889 25 1 3.6584 -3.1510 -0.8875 26 1 3.6578 -3.1498 0.8924 27 1 5.9715 -1.7966 0.0019 28 1 4.4105 -5.0800 0.0029 29 1 7.2524 -8.6351 0.0019 30 1 5.8400 -9.5448 0.0031 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186089521.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:52 Heat of formation + Delta-G solvation = -22.073230 kcal Electronic energy + Delta-G solvation = -17384.173114 eV Core-core repulsion = 14239.277510 eV Total energy + Delta-G solvation = -3144.895604 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.062 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.37243 -40.33850 -38.38290 -37.72484 -35.54007 -34.86054 -34.16051 -32.84145 -31.11358 -27.08305 -26.68233 -24.65159 -22.61858 -22.34610 -19.78885 -19.46663 -18.94704 -17.95734 -17.12019 -16.96031 -16.74473 -16.40310 -16.02648 -15.99680 -15.68060 -15.49369 -15.08136 -14.63358 -13.66921 -13.42491 -12.93961 -12.57905 -12.57125 -12.26633 -12.13805 -12.02455 -11.80368 -11.77157 -11.49264 -10.97708 -10.80107 -10.77068 -10.67047 -9.36599 -8.30268 -6.36955 -0.72312 -0.16654 0.19428 1.38985 1.40642 1.50885 1.54989 1.80770 2.07317 2.35531 2.56312 3.05031 3.05515 3.38815 3.55996 4.05712 4.14278 4.25470 4.36534 4.58731 4.71306 5.11991 5.28986 5.35954 5.55168 5.70270 5.85125 6.17599 6.22079 6.35930 6.70228 6.75346 7.11413 7.28013 8.85840 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.021206 B = 0.004291 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.074909 B = 6523.285570 C = 7822.911164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.009 3.991 3 Si 0.950 3.050 4 H -0.267 1.267 5 H -0.288 1.288 6 H -0.241 1.241 7 C -0.534 4.534 8 H 0.040 0.960 9 C -0.016 4.016 10 C 0.142 3.858 11 N -0.685 5.685 12 C 0.455 3.545 13 C -0.235 4.235 14 C 0.164 3.836 15 C 0.582 3.418 16 N -0.804 5.804 17 O -0.559 6.559 18 N -0.527 5.527 19 C 0.400 3.600 20 Cl 0.046 6.954 21 N -0.571 5.571 22 H 0.267 0.733 23 H 0.034 0.966 24 H 0.033 0.967 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.417 0.583 28 H 0.159 0.841 29 H 0.424 0.576 30 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.469 -12.917 0.024 24.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.189 4.189 3 Si 0.773 3.227 4 H -0.193 1.193 5 H -0.214 1.214 6 H -0.164 1.164 7 C -0.573 4.573 8 H 0.058 0.942 9 C -0.054 4.054 10 C 0.019 3.981 11 N -0.314 5.314 12 C 0.207 3.793 13 C -0.265 4.265 14 C 0.021 3.979 15 C 0.363 3.637 16 N -0.368 5.368 17 O -0.436 6.436 18 N -0.253 5.253 19 C 0.103 3.897 20 Cl 0.073 6.927 21 N -0.300 5.300 22 H 0.076 0.924 23 H 0.053 0.947 24 H 0.051 0.949 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.255 0.745 28 H 0.177 0.823 29 H 0.256 0.744 30 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 20.402 -12.697 0.026 24.030 hybrid contribution -0.545 0.889 -0.019 1.043 sum 19.857 -11.808 0.006 23.102 Atomic orbital electron populations 1.70055 1.08403 1.28324 1.51950 1.25952 0.95548 1.03475 0.93897 0.85664 0.79648 0.78178 0.79166 1.19255 1.21414 1.16426 1.21194 0.91133 0.93631 1.51307 0.94187 1.19650 0.94666 0.92992 0.98099 1.21483 0.75452 0.99512 1.01675 1.44918 1.06862 1.04868 1.74794 1.18387 0.86734 0.87526 0.86641 1.22356 1.03723 0.91392 1.09017 1.21147 0.88485 0.94379 0.93850 1.17626 0.85756 0.84010 0.76328 1.43414 1.12417 1.07266 1.73749 1.90880 1.14412 1.87168 1.51140 1.67763 1.09054 1.27772 1.20723 1.22651 0.90375 0.84083 0.92561 1.98436 1.00044 1.98249 1.95923 1.67247 1.07296 1.31391 1.24042 0.92368 0.94745 0.94867 0.91494 0.91495 0.74538 0.82344 0.74384 0.74572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.43 13.96 21.45 0.30 -57.13 16 2 C 0.01 0.50 5.47 84.65 0.46 0.96 16 3 Si 0.95 41.56 27.47 68.60 1.88 43.44 16 4 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 5 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 6 H -0.24 -9.50 6.54 99.48 0.65 -8.85 16 7 C -0.53 -28.65 9.66 25.60 0.25 -28.40 16 8 H 0.04 2.37 7.99 -2.91 -0.02 2.35 16 9 C -0.02 -0.67 4.16 29.85 0.12 -0.55 16 10 C 0.14 4.88 4.87 86.38 0.42 5.30 16 11 N -0.68 -19.98 5.71 -344.53 -1.97 -21.95 16 12 C 0.45 13.22 7.71 133.30 1.03 14.24 16 13 C -0.23 -6.78 8.94 22.86 0.20 -6.57 16 14 C 0.16 4.26 6.78 41.82 0.28 4.54 16 15 C 0.58 14.10 8.10 86.96 0.70 14.80 16 16 N -0.80 -11.55 8.87 -175.20 -1.55 -13.11 16 17 O -0.56 -17.77 17.25 -3.65 -0.06 -17.83 16 18 N -0.53 -12.57 9.66 -180.19 -1.74 -14.31 16 19 C 0.40 10.07 8.17 180.86 1.48 11.55 16 20 Cl 0.05 0.90 29.26 -2.72 -0.08 0.82 16 21 N -0.57 -15.99 10.42 -188.34 -1.96 -17.95 16 22 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 23 H 0.03 1.37 7.20 -2.38 -0.02 1.36 16 24 H 0.03 1.31 7.57 -2.39 -0.02 1.29 16 25 H 0.07 2.34 7.97 -2.38 -0.02 2.32 16 26 H 0.07 2.34 7.98 -2.39 -0.02 2.32 16 27 H 0.42 11.10 8.60 -92.71 -0.80 10.30 16 28 H 0.16 4.80 6.54 -2.91 -0.02 4.78 16 29 H 0.42 4.58 8.21 -92.71 -0.76 3.82 16 30 H 0.42 4.22 8.93 -92.71 -0.83 3.39 16 Total: -1.00 -65.77 286.50 -1.44 -67.21 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -1.21 Total: 14.94 kcal Atomic # 6 Polarization: 10.92 SS G_CDS: 4.95 Total: 15.87 kcal Atomic # 7 Polarization: -117.52 SS G_CDS: -6.92 Total: -124.45 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: -0.06 Total: -17.83 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 1.88 Total: 43.44 kcal Atomic # 17 Polarization: 0.90 SS G_CDS: -0.08 Total: 0.82 kcal Total: -65.77 -1.44 -67.21 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186089521.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.136 kcal (2) G-P(sol) polarization free energy of solvation -65.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds