Wall clock time and date at job start Mon Mar 30 2020 00:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.21266 * 119.99885 * 2 1 4 4 C 1.47022 * 119.99833 * 180.02562 * 2 1 3 5 5 C 1.40278 * 121.00775 * 359.97438 * 4 2 1 6 6 C 1.37837 * 119.06140 * 179.97438 * 5 4 2 7 7 N 1.31971 * 121.17722 * 359.97438 * 6 5 4 8 8 C 1.31523 * 122.26248 * 0.02562 * 7 6 5 9 9 C 1.39253 * 120.77526 * 359.73671 * 8 7 6 10 10 N 1.38708 * 120.63284 * 180.26574 * 9 8 7 11 11 S 1.65600 * 119.99841 * 324.64127 * 10 9 8 12 12 O 1.42101 * 106.40306 * 181.30694 * 11 10 9 13 13 O 1.42103 * 106.40545 * 314.23209 * 11 10 9 14 14 C 1.76203 * 107.21834 * 67.76849 * 11 10 9 15 15 H 1.07999 * 120.00103 * 0.02562 * 14 11 10 16 16 C 1.37881 * 120.00079 * 179.97438 * 14 11 10 17 17 N 1.31508 * 119.99836 * 0.02562 * 16 14 11 18 18 Si 1.86794 * 119.99814 * 180.02562 * 16 14 11 19 19 H 1.48500 * 109.47228 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47214 * 120.00293 * 18 16 14 21 21 H 1.48500 * 109.47064 * 239.99989 * 18 16 14 22 22 H 1.09002 * 109.46733 * 359.97438 * 1 2 3 23 23 H 1.08994 * 109.46979 * 239.99702 * 1 2 3 24 24 H 1.09002 * 109.47035 * 119.99389 * 1 2 3 25 25 H 1.08001 * 120.47083 * 359.95816 * 5 4 2 26 26 H 1.07998 * 119.41206 * 179.97438 * 6 5 4 27 27 H 1.08002 * 119.61081 * 179.97438 * 8 7 6 28 28 H 0.96994 * 120.00471 * 144.64110 * 10 9 8 29 29 H 0.97003 * 120.00045 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 6 2.2421 -1.2733 -0.0006 5 6 1.5622 -2.5002 -0.0006 6 6 2.2915 -3.6699 -0.0017 7 7 3.6111 -3.6522 -0.0032 8 6 4.2982 -2.5307 -0.0033 9 6 3.6503 -1.2981 -0.0072 10 7 4.3778 -0.1172 -0.0128 11 16 5.8091 -0.0226 0.8148 12 8 6.2860 1.3047 0.6412 13 8 5.5743 -0.6035 2.0903 14 6 6.9577 -1.0756 -0.0075 15 1 6.6526 -1.6272 -0.8845 16 6 8.2465 -1.1947 0.4679 17 7 8.6182 -0.5226 1.5354 18 14 9.4644 -2.3105 -0.4044 19 1 8.8029 -2.9500 -1.5700 20 1 10.6240 -1.5088 -0.8710 21 1 9.9343 -3.3604 0.5348 22 1 -0.3633 1.0277 0.0005 23 1 -0.3633 -0.5139 0.8899 24 1 -0.3633 -0.5137 -0.8901 25 1 0.4826 -2.5281 0.0005 26 1 1.7738 -4.6177 -0.0013 27 1 5.3776 -2.5662 -0.0041 28 1 4.0484 0.6532 -0.5014 29 1 9.5248 -0.6066 1.8701 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192939740.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:27 Heat of formation + Delta-G solvation = -88.783953 kcal Electronic energy + Delta-G solvation = -18733.984616 eV Core-core repulsion = 15555.947173 eV Total energy + Delta-G solvation = -3178.037443 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.051 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.48995 -38.63283 -35.53476 -35.01437 -34.18102 -33.26254 -32.76204 -29.81070 -28.96976 -26.46424 -24.48494 -22.83152 -20.37846 -19.13074 -18.05538 -17.26715 -16.82843 -16.60971 -15.82048 -15.10817 -14.91623 -14.62622 -14.26327 -14.20014 -14.11033 -13.57893 -13.43212 -12.44716 -12.29854 -12.25722 -12.15276 -11.35296 -11.29079 -11.06910 -10.70132 -10.61243 -10.47767 -10.40249 -10.09896 -9.58544 -9.37564 -9.14777 -8.97432 -8.04898 -6.84200 -5.51100 0.67413 1.33489 1.99795 2.49534 3.01725 3.10399 3.17653 3.94220 3.94828 4.00856 4.31361 4.49499 4.75539 4.81587 4.96517 5.07706 5.22768 5.24477 5.37176 5.55857 5.65401 5.79683 5.97967 6.15083 6.22113 6.61178 6.83871 7.17403 7.41037 7.66318 7.76031 8.17657 8.72341 10.10143 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.025464 B = 0.007514 C = 0.006213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.317267 B = 3725.535158 C = 4505.796870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.397 3.603 3 O -0.452 6.452 4 C -0.185 4.185 5 C -0.104 4.104 6 C 0.042 3.958 7 N -0.431 5.431 8 C 0.053 3.947 9 C 0.209 3.791 10 N -1.049 6.049 11 S 2.693 3.307 12 O -0.988 6.988 13 O -0.987 6.987 14 C -1.026 5.026 15 H 0.112 0.888 16 C 0.135 3.865 17 N -0.837 5.837 18 Si 0.925 3.075 19 H -0.259 1.259 20 H -0.270 1.270 21 H -0.268 1.268 22 H 0.085 0.915 23 H 0.094 0.906 24 H 0.094 0.906 25 H 0.141 0.859 26 H 0.158 0.842 27 H 0.196 0.804 28 H 0.424 0.576 29 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.765 -4.779 -4.965 15.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.275 3.725 3 O -0.327 6.327 4 C -0.198 4.198 5 C -0.124 4.124 6 C -0.113 4.113 7 N -0.140 5.140 8 C -0.111 4.111 9 C 0.103 3.897 10 N -0.792 5.792 11 S 2.794 3.206 12 O -0.978 6.978 13 O -0.977 6.977 14 C -1.159 5.159 15 H 0.130 0.870 16 C -0.084 4.084 17 N -0.466 5.466 18 Si 0.748 3.252 19 H -0.182 1.182 20 H -0.195 1.195 21 H -0.193 1.193 22 H 0.104 0.896 23 H 0.113 0.887 24 H 0.112 0.888 25 H 0.159 0.841 26 H 0.175 0.825 27 H 0.212 0.788 28 H 0.263 0.737 29 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.671 -4.413 -3.947 13.986 hybrid contribution 0.108 0.156 -1.000 1.018 sum -12.563 -4.257 -4.947 14.157 Atomic orbital electron populations 1.22205 0.93264 1.05192 1.04530 1.22345 0.91744 0.87103 0.71270 1.90476 1.71833 1.34182 1.36171 1.20767 0.92999 0.95938 1.10140 1.22214 1.00996 0.91742 0.97487 1.22570 0.89967 0.97981 1.00825 1.67499 1.08956 1.29876 1.07710 1.24046 1.03192 0.85548 0.98325 1.18801 0.90614 0.88222 0.92065 1.54378 1.41365 1.17669 1.65831 1.01415 0.70998 0.74762 0.73473 1.93408 1.77993 1.39877 1.86565 1.93418 1.84679 1.79497 1.40127 1.30551 1.11327 1.45955 1.28042 0.86970 1.24763 0.97710 0.93194 0.92774 1.69889 1.21488 1.35688 1.19514 0.86048 0.79414 0.79685 0.80068 1.18216 1.19490 1.19319 0.89600 0.88728 0.88779 0.84090 0.82469 0.78773 0.73659 0.89546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.67 9.01 36.01 0.32 -1.34 15 2 C 0.40 5.70 7.23 -30.75 -0.22 5.47 15 3 O -0.45 -8.14 14.85 5.57 0.08 -8.06 15 4 C -0.19 -2.90 5.92 -104.59 -0.62 -3.52 15 5 C -0.10 -1.24 9.54 -38.96 -0.37 -1.61 15 6 C 0.04 0.55 11.15 -17.64 -0.20 0.35 15 7 N -0.43 -7.57 10.32 -13.13 -0.14 -7.70 15 8 C 0.05 1.05 10.23 -17.31 -0.18 0.88 15 9 C 0.21 4.10 6.18 -83.39 -0.52 3.59 15 10 N -1.05 -22.81 5.10 32.67 0.17 -22.65 15 11 S 2.69 72.28 4.66 -107.50 -0.50 71.78 15 12 O -0.99 -29.28 18.02 -57.17 -1.03 -30.31 15 13 O -0.99 -28.96 17.51 -57.17 -1.00 -29.96 15 14 C -1.03 -27.09 7.66 30.60 0.23 -26.85 15 15 H 0.11 2.65 6.76 -52.49 -0.36 2.30 15 16 C 0.14 3.63 5.46 -17.82 -0.10 3.54 15 17 N -0.84 -23.91 13.19 55.43 0.73 -23.18 15 18 Si 0.92 19.86 29.54 -169.99 -5.02 14.84 15 19 H -0.26 -5.32 7.11 56.52 0.40 -4.92 15 20 H -0.27 -5.62 7.11 56.52 0.40 -5.22 15 21 H -0.27 -5.57 7.11 56.52 0.40 -5.17 15 22 H 0.09 0.71 8.12 -51.93 -0.42 0.29 15 23 H 0.09 0.64 8.12 -51.93 -0.42 0.21 15 24 H 0.09 0.57 8.13 -51.93 -0.42 0.15 15 25 H 0.14 1.01 7.23 -52.49 -0.38 0.63 15 26 H 0.16 1.46 8.06 -52.49 -0.42 1.03 15 27 H 0.20 4.18 4.43 -52.49 -0.23 3.95 15 28 H 0.42 8.59 6.73 -34.46 -0.23 8.36 15 29 H 0.29 7.49 8.31 -40.82 -0.34 7.15 15 LS Contribution 272.77 15.07 4.11 4.11 Total: -1.00 -35.61 272.77 -6.26 -41.87 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -2.02 Total: 8.75 kcal Atomic # 6 Polarization: -17.86 SS G_CDS: -1.64 Total: -19.50 kcal Atomic # 7 Polarization: -54.29 SS G_CDS: 0.76 Total: -53.53 kcal Atomic # 8 Polarization: -66.38 SS G_CDS: -1.95 Total: -68.33 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.84 kcal Atomic # 16 Polarization: 72.28 SS G_CDS: -0.50 Total: 71.78 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -35.61 -6.26 -41.87 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192939740.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.911 kcal (2) G-P(sol) polarization free energy of solvation -35.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds