Wall clock time and date at job start Mon Mar 30 2020 00:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.21266 * 119.99885 * 2 1 4 4 C 1.47022 * 119.99833 * 180.02562 * 2 1 3 5 5 C 1.40278 * 121.00775 * 359.97438 * 4 2 1 6 6 C 1.37837 * 119.06140 * 179.97438 * 5 4 2 7 7 N 1.31971 * 121.17722 * 359.97438 * 6 5 4 8 8 C 1.31523 * 122.26248 * 0.02562 * 7 6 5 9 9 C 1.39253 * 120.77526 * 359.73671 * 8 7 6 10 10 N 1.38708 * 120.63284 * 180.26574 * 9 8 7 11 11 S 1.65600 * 119.99841 * 324.64127 * 10 9 8 12 12 O 1.42101 * 106.40306 * 181.30694 * 11 10 9 13 13 O 1.42103 * 106.40545 * 314.23209 * 11 10 9 14 14 C 1.76203 * 107.21834 * 67.76849 * 11 10 9 15 15 H 1.07999 * 120.00103 * 0.02562 * 14 11 10 16 16 C 1.37881 * 120.00079 * 179.97438 * 14 11 10 17 17 N 1.31508 * 119.99836 * 0.02562 * 16 14 11 18 18 Si 1.86794 * 119.99814 * 180.02562 * 16 14 11 19 19 H 1.48500 * 109.47228 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47214 * 120.00293 * 18 16 14 21 21 H 1.48500 * 109.47064 * 239.99989 * 18 16 14 22 22 H 1.09002 * 109.46733 * 359.97438 * 1 2 3 23 23 H 1.08994 * 109.46979 * 239.99702 * 1 2 3 24 24 H 1.09002 * 109.47035 * 119.99389 * 1 2 3 25 25 H 1.08001 * 120.47083 * 359.95816 * 5 4 2 26 26 H 1.07998 * 119.41206 * 179.97438 * 6 5 4 27 27 H 1.08002 * 119.61081 * 179.97438 * 8 7 6 28 28 H 0.96994 * 120.00471 * 144.64110 * 10 9 8 29 29 H 0.97003 * 120.00045 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 6 2.2421 -1.2733 -0.0006 5 6 1.5622 -2.5002 -0.0006 6 6 2.2915 -3.6699 -0.0017 7 7 3.6111 -3.6522 -0.0032 8 6 4.2982 -2.5307 -0.0033 9 6 3.6503 -1.2981 -0.0072 10 7 4.3778 -0.1172 -0.0128 11 16 5.8091 -0.0226 0.8148 12 8 6.2860 1.3047 0.6412 13 8 5.5743 -0.6035 2.0903 14 6 6.9577 -1.0756 -0.0075 15 1 6.6526 -1.6272 -0.8845 16 6 8.2465 -1.1947 0.4679 17 7 8.6182 -0.5226 1.5354 18 14 9.4644 -2.3105 -0.4044 19 1 8.8029 -2.9500 -1.5700 20 1 10.6240 -1.5088 -0.8710 21 1 9.9343 -3.3604 0.5348 22 1 -0.3633 1.0277 0.0005 23 1 -0.3633 -0.5139 0.8899 24 1 -0.3633 -0.5137 -0.8901 25 1 0.4826 -2.5281 0.0005 26 1 1.7738 -4.6177 -0.0013 27 1 5.3776 -2.5662 -0.0041 28 1 4.0484 0.6532 -0.5014 29 1 9.5248 -0.6066 1.8701 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192939740.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:27 Heat of formation + Delta-G solvation = -119.251277 kcal Electronic energy + Delta-G solvation = -18735.305778 eV Core-core repulsion = 15555.947173 eV Total energy + Delta-G solvation = -3179.358605 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.051 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.72542 -39.83961 -37.68043 -36.58749 -36.39042 -35.30931 -33.93500 -30.81066 -30.20769 -28.51087 -25.70683 -24.13750 -21.68270 -20.91022 -19.89325 -18.76811 -18.51422 -18.01231 -17.40211 -16.85340 -16.16082 -16.07564 -15.86397 -15.73133 -15.44001 -14.99488 -14.80736 -14.10481 -13.81138 -13.17868 -13.10950 -13.04610 -13.02270 -12.87754 -12.72981 -12.66083 -12.31707 -12.27752 -11.32614 -11.29102 -11.02910 -10.76051 -10.36160 -9.48600 -8.85207 -7.62207 -0.52107 -0.07456 0.17910 1.32673 1.34050 1.38162 1.52968 2.15631 2.49084 2.57320 2.77265 2.93596 3.45871 3.57122 3.70226 3.82054 3.98131 4.13316 4.30583 4.51157 4.60205 4.72738 4.82709 4.87340 5.04795 5.18328 5.28465 5.58838 5.75849 5.98227 6.44868 6.65548 6.93790 8.12542 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.025464 B = 0.007514 C = 0.006213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.317267 B = 3725.535158 C = 4505.796870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.392 3.608 3 O -0.502 6.502 4 C -0.189 4.189 5 C -0.069 4.069 6 C 0.051 3.949 7 N -0.452 5.452 8 C 0.018 3.982 9 C 0.159 3.841 10 N -1.045 6.045 11 S 2.699 3.301 12 O -1.032 7.032 13 O -1.026 7.026 14 C -1.033 5.033 15 H 0.131 0.869 16 C 0.074 3.926 17 N -0.888 5.888 18 Si 0.996 3.004 19 H -0.244 1.244 20 H -0.258 1.258 21 H -0.256 1.256 22 H 0.086 0.914 23 H 0.125 0.875 24 H 0.132 0.868 25 H 0.209 0.791 26 H 0.210 0.790 27 H 0.165 0.835 28 H 0.427 0.573 29 H 0.303 0.697 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.944 -7.351 -6.284 19.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.273 3.727 3 O -0.379 6.379 4 C -0.202 4.202 5 C -0.089 4.089 6 C -0.106 4.106 7 N -0.162 5.162 8 C -0.143 4.143 9 C 0.056 3.944 10 N -0.793 5.793 11 S 2.801 3.199 12 O -1.022 7.022 13 O -1.016 7.016 14 C -1.167 5.167 15 H 0.149 0.851 16 C -0.140 4.140 17 N -0.519 5.519 18 Si 0.813 3.187 19 H -0.167 1.167 20 H -0.182 1.182 21 H -0.180 1.180 22 H 0.105 0.895 23 H 0.143 0.857 24 H 0.150 0.850 25 H 0.225 0.775 26 H 0.226 0.774 27 H 0.182 0.818 28 H 0.267 0.733 29 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -15.864 -6.976 -5.257 18.110 hybrid contribution 0.804 0.835 -0.599 1.305 sum -15.060 -6.141 -5.857 17.286 Atomic orbital electron populations 1.22284 0.87690 1.06547 1.07528 1.23307 0.94517 0.85622 0.69239 1.90472 1.73355 1.35613 1.38500 1.21327 0.91422 0.98691 1.08784 1.22920 1.03943 0.89161 0.92878 1.23575 0.88553 1.00798 0.97631 1.67476 1.11416 1.28813 1.08452 1.23575 1.02464 0.86780 1.01499 1.19093 0.92634 0.86885 0.95746 1.53570 1.40361 1.19048 1.66300 1.00824 0.71764 0.73919 0.73346 1.93333 1.79630 1.42028 1.87219 1.93344 1.85633 1.79792 1.42826 1.30779 1.11536 1.45827 1.28544 0.85096 1.26069 0.99910 0.94653 0.93369 1.69983 1.22674 1.37734 1.21460 0.85010 0.76704 0.77660 0.79284 1.16673 1.18190 1.18005 0.89456 0.85722 0.84994 0.77452 0.77374 0.81773 0.73275 0.88667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.18 9.01 71.24 0.64 -1.54 15 2 C 0.39 10.39 7.23 27.99 0.20 10.59 15 3 O -0.50 -18.29 14.85 -2.99 -0.04 -18.34 15 4 C -0.19 -5.51 5.92 -19.84 -0.12 -5.62 15 5 C -0.07 -1.26 9.54 22.67 0.22 -1.05 15 6 C 0.05 1.12 11.15 84.58 0.94 2.06 15 7 N -0.45 -15.24 10.32 -195.46 -2.02 -17.26 15 8 C 0.02 0.73 10.23 84.98 0.87 1.60 15 9 C 0.16 6.40 6.18 38.93 0.24 6.64 15 10 N -1.04 -48.19 5.10 -50.55 -0.26 -48.45 15 11 S 2.70 154.49 4.66 -56.49 -0.26 154.23 15 12 O -1.03 -65.41 18.02 -128.00 -2.31 -67.72 15 13 O -1.03 -64.26 17.51 -128.00 -2.24 -66.50 15 14 C -1.03 -57.14 7.66 67.74 0.52 -56.62 15 15 H 0.13 6.49 6.76 -2.91 -0.02 6.47 15 16 C 0.07 4.11 5.46 84.66 0.46 4.57 15 17 N -0.89 -52.96 13.19 21.45 0.28 -52.67 15 18 Si 1.00 41.01 29.54 68.60 2.03 43.04 15 19 H -0.24 -9.34 7.11 99.48 0.71 -8.64 15 20 H -0.26 -10.02 7.11 99.48 0.71 -9.31 15 21 H -0.26 -9.94 7.11 99.48 0.71 -9.23 15 22 H 0.09 1.10 8.12 -2.39 -0.02 1.08 15 23 H 0.12 0.82 8.12 -2.39 -0.02 0.81 15 24 H 0.13 0.65 8.13 -2.39 -0.02 0.63 15 25 H 0.21 1.04 7.23 -2.91 -0.02 1.02 15 26 H 0.21 2.38 8.06 -2.91 -0.02 2.36 15 27 H 0.17 7.55 4.43 -2.91 -0.01 7.54 15 28 H 0.43 18.58 6.73 -96.75 -0.65 17.93 15 29 H 0.30 16.06 8.31 -92.71 -0.77 15.29 15 Total: -1.00 -86.83 272.77 -0.28 -87.11 By element: Atomic # 1 Polarization: 25.37 SS G_CDS: 0.56 Total: 25.93 kcal Atomic # 6 Polarization: -43.35 SS G_CDS: 3.98 Total: -39.37 kcal Atomic # 7 Polarization: -116.39 SS G_CDS: -1.99 Total: -118.38 kcal Atomic # 8 Polarization: -147.96 SS G_CDS: -4.59 Total: -152.55 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 2.03 Total: 43.04 kcal Atomic # 16 Polarization: 154.49 SS G_CDS: -0.26 Total: 154.23 kcal Total: -86.83 -0.28 -87.11 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192939740.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.145 kcal (2) G-P(sol) polarization free energy of solvation -86.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds