Wall clock time and date at job start Mon Mar 30 2020 00:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21281 * 119.99925 * 2 1 4 4 C 1.46983 * 120.00119 * 180.02562 * 2 1 3 5 5 N 1.33108 * 119.82724 * 359.97438 * 4 2 1 6 6 C 1.31242 * 121.69012 * 179.97438 * 5 4 2 7 7 C 1.38973 * 121.16658 * 359.97438 * 6 5 4 8 8 C 1.38145 * 119.52454 * 0.28594 * 7 6 5 9 9 C 1.39648 * 118.43611 * 359.45599 * 8 7 6 10 10 N 1.38648 * 120.57986 * 180.26442 * 9 8 7 11 11 S 1.65597 * 120.00085 * 35.27772 * 10 9 8 12 12 O 1.42103 * 106.40431 * 178.53952 * 11 10 9 13 13 O 1.42103 * 106.40605 * 311.46184 * 11 10 9 14 14 C 1.76203 * 107.21884 * 64.99772 * 11 10 9 15 15 H 1.07999 * 119.99849 * 0.02562 * 14 11 10 16 16 C 1.37875 * 120.00170 * 179.97438 * 14 11 10 17 17 N 1.31525 * 119.99965 * 0.02562 * 16 14 11 18 18 Si 1.86804 * 120.00215 * 180.02562 * 16 14 11 19 19 H 1.48496 * 109.46666 * 60.00598 * 18 16 14 20 20 H 1.48501 * 109.46850 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47053 * 300.00498 * 18 16 14 22 22 H 1.08998 * 109.47165 * 240.00118 * 1 2 3 23 23 H 1.09003 * 109.47521 * 0.02562 * 1 2 3 24 24 H 1.09006 * 109.47242 * 119.99881 * 1 2 3 25 25 H 1.08004 * 119.40931 * 180.02562 * 6 5 4 26 26 H 1.08002 * 120.23387 * 180.02562 * 7 6 5 27 27 H 1.07996 * 120.77729 * 179.72124 * 8 7 6 28 28 H 0.96996 * 120.00297 * 215.27418 * 10 9 8 29 29 H 0.97001 * 119.99768 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 6 2.2419 -1.2729 -0.0006 5 7 1.5729 -2.4236 -0.0006 6 6 2.1919 -3.5810 -0.0016 7 6 3.5796 -3.6544 -0.0032 8 6 4.3230 -2.4900 0.0022 9 6 3.6458 -1.2687 -0.0025 10 7 4.3476 -0.0730 -0.0029 11 16 5.7789 0.0467 -0.8270 12 8 6.2250 1.3860 -0.6640 13 8 6.5550 -1.0823 -0.4496 14 6 5.4131 -0.1510 -2.5392 15 1 4.3943 -0.3145 -2.8583 16 6 6.4271 -0.0959 -3.4717 17 7 7.6677 0.1037 -3.0832 18 14 6.0392 -0.3048 -5.2871 19 1 5.0978 0.7598 -5.7176 20 1 7.2935 -0.2058 -6.0758 21 1 5.4180 -1.6350 -5.5106 22 1 -0.3633 -0.5138 0.8900 23 1 -0.3634 1.0277 -0.0005 24 1 -0.3634 -0.5138 -0.8900 25 1 1.6123 -4.4923 -0.0019 26 1 4.0734 -4.6149 -0.0044 27 1 5.4024 -2.5235 0.0056 28 1 4.0002 0.6935 0.4795 29 1 8.3812 0.1420 -3.7392 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192943028.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:22 Heat of formation + Delta-G solvation = -86.925738 kcal Electronic energy + Delta-G solvation = -18809.898000 eV Core-core repulsion = 15631.941135 eV Total energy + Delta-G solvation = -3177.956865 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.051 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.44785 -38.44933 -35.71035 -35.02523 -34.24517 -33.20566 -32.22298 -30.16348 -28.75361 -26.27228 -24.36223 -22.83531 -20.26385 -19.22538 -17.88402 -17.50691 -16.82585 -16.44432 -15.76204 -15.18941 -14.86577 -14.66217 -14.28620 -14.10260 -13.75338 -13.37030 -13.01709 -12.55885 -12.15970 -12.09998 -12.00135 -11.47526 -11.27664 -11.14656 -10.89994 -10.67860 -10.55160 -10.33609 -9.96714 -9.47494 -9.34222 -9.06571 -9.02518 -8.08492 -6.82636 -5.46683 0.71344 1.46097 2.03483 2.48189 3.03293 3.07226 3.13377 3.94396 3.98275 4.03876 4.33595 4.53175 4.66154 5.04755 5.16017 5.23532 5.35278 5.52091 5.56374 5.64442 5.66602 6.03373 6.17337 6.22174 6.32873 6.75098 6.88272 7.20370 7.46344 7.68232 7.83147 8.05695 8.75770 10.11835 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.019602 B = 0.007697 C = 0.007589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.058114 B = 3636.788853 C = 3688.696009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.412 3.588 3 O -0.452 6.452 4 C -0.018 4.018 5 N -0.426 5.426 6 C 0.057 3.943 7 C -0.111 4.111 8 C -0.140 4.140 9 C 0.210 3.790 10 N -1.050 6.050 11 S 2.699 3.301 12 O -0.987 6.987 13 O -0.995 6.995 14 C -1.013 5.013 15 H 0.103 0.897 16 C 0.135 3.865 17 N -0.843 5.843 18 Si 0.924 3.076 19 H -0.262 1.262 20 H -0.274 1.274 21 H -0.263 1.263 22 H 0.093 0.907 23 H 0.078 0.922 24 H 0.094 0.906 25 H 0.160 0.840 26 H 0.142 0.858 27 H 0.188 0.812 28 H 0.426 0.574 29 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.115 -6.710 4.268 13.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.290 3.710 3 O -0.325 6.325 4 C -0.156 4.156 5 N -0.137 5.137 6 C -0.108 4.108 7 C -0.132 4.132 8 C -0.169 4.169 9 C 0.104 3.896 10 N -0.794 5.794 11 S 2.800 3.200 12 O -0.978 6.978 13 O -0.985 6.985 14 C -1.147 5.147 15 H 0.121 0.879 16 C -0.084 4.084 17 N -0.472 5.472 18 Si 0.747 3.253 19 H -0.187 1.187 20 H -0.199 1.199 21 H -0.187 1.187 22 H 0.112 0.888 23 H 0.097 0.903 24 H 0.113 0.887 25 H 0.177 0.823 26 H 0.160 0.840 27 H 0.204 0.796 28 H 0.266 0.734 29 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.529 -5.863 4.602 12.900 hybrid contribution 0.187 -0.072 -1.293 1.308 sum -10.342 -5.935 3.309 12.375 Atomic orbital electron populations 1.22024 0.92735 1.03996 1.04975 1.22151 0.92027 0.86124 0.70745 1.90462 1.71886 1.33495 1.36636 1.21457 0.90062 0.94402 1.09699 1.67479 1.40088 0.97562 1.08602 1.22653 0.92240 0.95401 1.00475 1.22306 0.95037 0.99250 0.96573 1.22894 1.04825 0.90314 0.98867 1.18583 0.91323 0.87199 0.92452 1.54258 1.43652 1.17035 1.64484 1.01159 0.69697 0.73242 0.75856 1.93410 1.77830 1.38299 1.88216 1.93253 1.66851 1.53156 1.85200 1.30309 1.02782 1.66180 1.15441 0.87904 1.24741 0.93175 0.88501 1.01996 1.69875 1.00363 1.38852 1.38107 0.86132 0.78838 0.79989 0.80292 1.18690 1.19879 1.18715 0.88820 0.90268 0.88725 0.82319 0.83979 0.79560 0.73414 0.89562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.07 9.79 36.00 0.35 -1.72 15 2 C 0.41 6.69 7.22 -30.77 -0.22 6.47 15 3 O -0.45 -8.59 14.62 5.56 0.08 -8.51 15 4 C -0.02 -0.31 6.74 -82.96 -0.56 -0.87 15 5 N -0.43 -6.34 9.78 -9.76 -0.10 -6.44 15 6 C 0.06 0.73 11.17 -17.53 -0.20 0.53 15 7 C -0.11 -1.53 10.10 -39.34 -0.40 -1.93 15 8 C -0.14 -2.56 9.32 -39.09 -0.36 -2.92 15 9 C 0.21 4.11 6.35 -83.45 -0.53 3.58 15 10 N -1.05 -22.83 5.07 32.65 0.17 -22.66 15 11 S 2.70 71.60 4.87 -107.50 -0.52 71.08 15 12 O -0.99 -29.19 18.02 -57.17 -1.03 -30.22 15 13 O -0.99 -27.08 14.73 -57.17 -0.84 -27.92 15 14 C -1.01 -27.97 9.67 30.60 0.30 -27.68 15 15 H 0.10 2.68 7.81 -52.49 -0.41 2.27 15 16 C 0.13 3.71 5.46 -17.82 -0.10 3.62 15 17 N -0.84 -24.22 13.19 55.43 0.73 -23.49 15 18 Si 0.92 20.50 29.54 -169.99 -5.02 15.48 15 19 H -0.26 -5.71 7.11 56.52 0.40 -5.30 15 20 H -0.27 -5.75 7.11 56.52 0.40 -5.34 15 21 H -0.26 -5.61 7.11 56.52 0.40 -5.20 15 22 H 0.09 0.92 8.14 -51.93 -0.42 0.49 15 23 H 0.08 0.83 8.12 -51.93 -0.42 0.40 15 24 H 0.09 1.00 8.14 -51.93 -0.42 0.58 15 25 H 0.16 1.38 8.06 -52.48 -0.42 0.96 15 26 H 0.14 1.45 8.06 -52.49 -0.42 1.03 15 27 H 0.19 3.76 5.14 -52.49 -0.27 3.49 15 28 H 0.43 8.73 6.55 -34.46 -0.23 8.50 15 29 H 0.29 7.58 8.31 -40.82 -0.34 7.24 15 LS Contribution 275.30 15.07 4.15 4.15 Total: -1.00 -34.09 275.30 -6.26 -40.34 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -2.15 Total: 9.12 kcal Atomic # 6 Polarization: -19.20 SS G_CDS: -1.72 Total: -20.92 kcal Atomic # 7 Polarization: -53.39 SS G_CDS: 0.80 Total: -52.59 kcal Atomic # 8 Polarization: -64.86 SS G_CDS: -1.79 Total: -66.65 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 16 Polarization: 71.60 SS G_CDS: -0.52 Total: 71.08 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -34.09 -6.26 -40.34 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192943028.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.583 kcal (2) G-P(sol) polarization free energy of solvation -34.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds