Wall clock time and date at job start Mon Mar 30 2020 00:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21281 * 119.99925 * 2 1 4 4 C 1.46983 * 120.00119 * 180.02562 * 2 1 3 5 5 N 1.33108 * 119.82724 * 359.97438 * 4 2 1 6 6 C 1.31242 * 121.69012 * 179.97438 * 5 4 2 7 7 C 1.38973 * 121.16658 * 359.97438 * 6 5 4 8 8 C 1.38145 * 119.52454 * 0.28594 * 7 6 5 9 9 C 1.39648 * 118.43611 * 359.45599 * 8 7 6 10 10 N 1.38648 * 120.57986 * 180.26442 * 9 8 7 11 11 S 1.65597 * 120.00085 * 35.27772 * 10 9 8 12 12 O 1.42103 * 106.40431 * 178.53952 * 11 10 9 13 13 O 1.42103 * 106.40605 * 311.46184 * 11 10 9 14 14 C 1.76203 * 107.21884 * 64.99772 * 11 10 9 15 15 H 1.07999 * 119.99849 * 0.02562 * 14 11 10 16 16 C 1.37875 * 120.00170 * 179.97438 * 14 11 10 17 17 N 1.31525 * 119.99965 * 0.02562 * 16 14 11 18 18 Si 1.86804 * 120.00215 * 180.02562 * 16 14 11 19 19 H 1.48496 * 109.46666 * 60.00598 * 18 16 14 20 20 H 1.48501 * 109.46850 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47053 * 300.00498 * 18 16 14 22 22 H 1.08998 * 109.47165 * 240.00118 * 1 2 3 23 23 H 1.09003 * 109.47521 * 0.02562 * 1 2 3 24 24 H 1.09006 * 109.47242 * 119.99881 * 1 2 3 25 25 H 1.08004 * 119.40931 * 180.02562 * 6 5 4 26 26 H 1.08002 * 120.23387 * 180.02562 * 7 6 5 27 27 H 1.07996 * 120.77729 * 179.72124 * 8 7 6 28 28 H 0.96996 * 120.00297 * 215.27418 * 10 9 8 29 29 H 0.97001 * 119.99768 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 6 2.2419 -1.2729 -0.0006 5 7 1.5729 -2.4236 -0.0006 6 6 2.1919 -3.5810 -0.0016 7 6 3.5796 -3.6544 -0.0032 8 6 4.3230 -2.4900 0.0022 9 6 3.6458 -1.2687 -0.0025 10 7 4.3476 -0.0730 -0.0029 11 16 5.7789 0.0467 -0.8270 12 8 6.2250 1.3860 -0.6640 13 8 6.5550 -1.0823 -0.4496 14 6 5.4131 -0.1510 -2.5392 15 1 4.3943 -0.3145 -2.8583 16 6 6.4271 -0.0959 -3.4717 17 7 7.6677 0.1037 -3.0832 18 14 6.0392 -0.3048 -5.2871 19 1 5.0978 0.7598 -5.7176 20 1 7.2935 -0.2058 -6.0758 21 1 5.4180 -1.6350 -5.5106 22 1 -0.3633 -0.5138 0.8900 23 1 -0.3634 1.0277 -0.0005 24 1 -0.3634 -0.5138 -0.8900 25 1 1.6123 -4.4923 -0.0019 26 1 4.0734 -4.6149 -0.0044 27 1 5.4024 -2.5235 0.0056 28 1 4.0002 0.6935 0.4795 29 1 8.3812 0.1420 -3.7392 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192943028.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:21 Heat of formation + Delta-G solvation = -114.414652 kcal Electronic energy + Delta-G solvation = -18811.090008 eV Core-core repulsion = 15631.941135 eV Total energy + Delta-G solvation = -3179.148873 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.051 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.73114 -39.73287 -37.74677 -36.65549 -36.38291 -35.28566 -33.46080 -31.35982 -29.97715 -28.40278 -25.58899 -24.15946 -21.56130 -21.16099 -19.74719 -19.01765 -18.43566 -18.02607 -17.19337 -17.07161 -16.21560 -16.11422 -15.93316 -15.63517 -15.46695 -14.63029 -14.40385 -14.09886 -13.77410 -13.52810 -13.09220 -13.07325 -12.99929 -12.94644 -12.76628 -12.53698 -12.37387 -12.34323 -11.32527 -11.22472 -11.14082 -10.69714 -10.35162 -9.53625 -8.86321 -7.62857 -0.57336 -0.05549 0.31458 1.26316 1.28240 1.30667 1.44470 2.12431 2.46995 2.55750 2.77919 2.84988 3.40305 3.52739 3.79374 3.94809 4.10045 4.15902 4.31798 4.45303 4.70960 4.73198 4.84481 5.03022 5.14474 5.17964 5.29555 5.64419 5.74201 5.97662 6.35681 6.64763 6.83549 8.10332 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.019602 B = 0.007697 C = 0.007589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.058114 B = 3636.788853 C = 3688.696009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.405 3.595 3 O -0.491 6.491 4 C -0.023 4.023 5 N -0.419 5.419 6 C 0.076 3.924 7 C -0.093 4.093 8 C -0.169 4.169 9 C 0.167 3.833 10 N -1.046 6.046 11 S 2.707 3.293 12 O -1.032 7.032 13 O -1.013 7.013 14 C -1.034 5.034 15 H 0.110 0.890 16 C 0.076 3.924 17 N -0.886 5.886 18 Si 0.991 3.009 19 H -0.256 1.256 20 H -0.255 1.255 21 H -0.246 1.246 22 H 0.116 0.884 23 H 0.088 0.912 24 H 0.110 0.890 25 H 0.215 0.785 26 H 0.184 0.816 27 H 0.160 0.840 28 H 0.427 0.573 29 H 0.303 0.697 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.801 -9.181 3.200 16.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.285 3.715 3 O -0.367 6.367 4 C -0.161 4.161 5 N -0.131 5.131 6 C -0.089 4.089 7 C -0.114 4.114 8 C -0.198 4.198 9 C 0.063 3.937 10 N -0.795 5.795 11 S 2.810 3.190 12 O -1.022 7.022 13 O -1.003 7.003 14 C -1.168 5.168 15 H 0.128 0.872 16 C -0.138 4.138 17 N -0.516 5.516 18 Si 0.808 3.192 19 H -0.180 1.180 20 H -0.179 1.179 21 H -0.170 1.170 22 H 0.135 0.865 23 H 0.107 0.893 24 H 0.128 0.872 25 H 0.231 0.769 26 H 0.201 0.799 27 H 0.177 0.823 28 H 0.268 0.732 29 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -13.229 -8.354 3.561 16.046 hybrid contribution 0.926 0.519 -0.850 1.360 sum -12.302 -7.835 2.711 14.835 Atomic orbital electron populations 1.22040 0.88639 1.05316 1.06596 1.22913 0.94187 0.85175 0.69233 1.90448 1.73030 1.34613 1.38585 1.21693 0.89056 0.95955 1.09350 1.67634 1.39516 0.97432 1.08506 1.23603 0.92180 0.96390 0.96736 1.22792 0.95628 0.99205 0.93727 1.22846 1.04063 0.91824 1.01047 1.18945 0.92616 0.86464 0.95641 1.53584 1.42733 1.18430 1.64735 1.00582 0.70358 0.72057 0.75977 1.93338 1.79703 1.40356 1.88804 1.93233 1.68465 1.53192 1.85420 1.30597 1.03425 1.66469 1.16304 0.87174 1.25984 0.92750 0.87596 1.07520 1.69951 1.01639 1.39785 1.40261 0.85160 0.79615 0.80762 0.73681 1.17973 1.17900 1.16973 0.86545 0.89288 0.87185 0.76859 0.79918 0.82291 0.73181 0.88619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.44 9.79 71.24 0.70 -2.74 15 2 C 0.40 12.86 7.22 27.98 0.20 13.06 15 3 O -0.49 -19.14 14.62 -3.03 -0.04 -19.19 15 4 C -0.02 -0.78 6.74 41.77 0.28 -0.50 15 5 N -0.42 -11.04 9.78 -184.78 -1.81 -12.84 15 6 C 0.08 1.57 11.17 84.96 0.95 2.52 15 7 C -0.09 -2.28 10.10 22.42 0.23 -2.05 15 8 C -0.17 -6.16 9.32 22.59 0.21 -5.95 15 9 C 0.17 6.62 6.35 38.93 0.25 6.87 15 10 N -1.05 -47.84 5.07 -50.63 -0.26 -48.10 15 11 S 2.71 151.08 4.87 -56.49 -0.27 150.81 15 12 O -1.03 -64.60 18.02 -128.00 -2.31 -66.90 15 13 O -1.01 -58.14 14.73 -128.00 -1.89 -60.03 15 14 C -1.03 -58.60 9.67 67.73 0.66 -57.95 15 15 H 0.11 5.86 7.81 -2.91 -0.02 5.84 15 16 C 0.08 4.22 5.46 84.65 0.46 4.68 15 17 N -0.89 -52.20 13.19 21.45 0.28 -51.92 15 18 Si 0.99 41.31 29.54 68.60 2.03 43.34 15 19 H -0.26 -10.30 7.11 99.48 0.71 -9.60 15 20 H -0.26 -9.77 7.11 99.48 0.71 -9.07 15 21 H -0.25 -9.53 7.11 99.48 0.71 -8.83 15 22 H 0.12 1.86 8.14 -2.39 -0.02 1.84 15 23 H 0.09 1.65 8.12 -2.39 -0.02 1.63 15 24 H 0.11 1.94 8.14 -2.38 -0.02 1.92 15 25 H 0.21 2.15 8.06 -2.91 -0.02 2.13 15 26 H 0.18 2.89 8.06 -2.91 -0.02 2.87 15 27 H 0.16 6.70 5.14 -2.91 -0.01 6.69 15 28 H 0.43 18.73 6.55 -96.75 -0.63 18.09 15 29 H 0.30 15.94 8.31 -92.71 -0.77 15.17 15 Total: -1.00 -78.44 275.30 0.24 -78.20 By element: Atomic # 1 Polarization: 28.12 SS G_CDS: 0.57 Total: 28.69 kcal Atomic # 6 Polarization: -45.99 SS G_CDS: 3.93 Total: -42.06 kcal Atomic # 7 Polarization: -111.08 SS G_CDS: -1.78 Total: -112.87 kcal Atomic # 8 Polarization: -141.88 SS G_CDS: -4.24 Total: -146.11 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.34 kcal Atomic # 16 Polarization: 151.08 SS G_CDS: -0.27 Total: 150.81 kcal Total: -78.44 0.24 -78.20 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192943028.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.216 kcal (2) G-P(sol) polarization free energy of solvation -78.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds