Wall clock time and date at job start Mon Mar 30 2020 00:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21216 * 120.00130 * 2 1 4 4 C 1.47526 * 119.99872 * 180.02562 * 2 1 3 5 5 C 1.39383 * 119.69686 * 179.72736 * 4 2 1 6 6 C 1.38777 * 119.20158 * 179.77121 * 5 4 2 7 7 C 1.38296 * 118.59768 * 0.49539 * 6 5 4 8 8 C 1.39564 * 119.32770 * 359.74691 * 7 6 5 9 9 N 1.38967 * 119.62138 * 179.97438 * 8 7 6 10 10 S 1.65602 * 119.99762 * 180.02562 * 9 8 7 11 11 O 1.42101 * 106.39858 * 178.53755 * 10 9 8 12 12 O 1.42095 * 106.40040 * 311.45950 * 10 9 8 13 13 C 1.76200 * 107.21785 * 64.99787 * 10 9 8 14 14 H 1.08004 * 119.99874 * 0.02562 * 13 10 9 15 15 C 1.37880 * 120.00112 * 179.97438 * 13 10 9 16 16 N 1.31515 * 119.99704 * 0.02562 * 15 13 10 17 17 Si 1.86798 * 120.00009 * 180.02562 * 15 13 10 18 18 H 1.48488 * 109.47371 * 60.00112 * 17 15 13 19 19 H 1.48502 * 109.47023 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47058 * 299.99769 * 17 15 13 21 21 N 1.32003 * 120.74972 * 0.02562 * 8 7 6 22 22 H 1.08999 * 109.47280 * 270.00038 * 1 2 3 23 23 H 1.08997 * 109.47027 * 29.99998 * 1 2 3 24 24 H 1.09000 * 109.47497 * 150.00232 * 1 2 3 25 25 H 1.07994 * 120.40287 * 359.97438 * 5 4 2 26 26 H 1.07997 * 120.69789 * 180.21969 * 6 5 4 27 27 H 1.07996 * 120.33442 * 179.77438 * 7 6 5 28 28 H 0.97001 * 119.99896 * 0.02562 * 9 8 7 29 29 H 0.96999 * 119.99684 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1130 1.0497 0.0000 4 6 2.2445 -1.2776 -0.0006 5 6 3.6383 -1.2703 -0.0063 6 6 4.3218 -2.4781 -0.0020 7 6 3.5910 -3.6522 -0.0025 8 6 2.1968 -3.5896 -0.0020 9 7 1.4565 -4.7657 -0.0031 10 16 -0.1983 -4.7023 -0.0032 11 8 -0.6514 -6.0487 -0.0392 12 8 -0.5648 -3.7860 1.0192 13 6 -0.6922 -3.9702 -1.5279 14 1 0.0537 -3.6632 -2.2461 15 6 -2.0309 -3.7901 -1.8046 16 7 -2.9391 -4.1643 -0.9301 17 14 -2.5544 -3.0146 -3.4213 18 1 -2.0633 -3.8446 -4.5504 19 1 -4.0362 -2.9330 -3.4742 20 1 -1.9800 -1.6491 -3.5242 21 7 1.5734 -2.4261 -0.0016 22 1 -0.3634 0.0000 1.0276 23 1 -0.3633 0.8900 -0.5138 24 1 -0.3634 -0.8900 -0.5138 25 1 4.1799 -0.3360 -0.0108 26 1 5.4015 -2.5006 -0.0027 27 1 4.0942 -4.6078 -0.0029 28 1 1.9090 -5.6236 -0.0038 29 1 -3.8809 -4.0380 -1.1249 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192951758.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:24 Heat of formation + Delta-G solvation = -86.671830 kcal Electronic energy + Delta-G solvation = -18777.773449 eV Core-core repulsion = 15599.827594 eV Total energy + Delta-G solvation = -3177.945854 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.051 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.35611 -38.61275 -35.32726 -34.77772 -34.03726 -33.08792 -32.60601 -29.89708 -29.04155 -26.15553 -24.41239 -22.80291 -20.31757 -19.09134 -18.00081 -17.35662 -16.40405 -16.08212 -15.56635 -15.33463 -15.00629 -14.78053 -14.19920 -14.03759 -13.70628 -13.52096 -13.17242 -12.18037 -12.05636 -11.73805 -11.60130 -11.36876 -11.19507 -11.02860 -10.88178 -10.62716 -10.34231 -10.25674 -9.97180 -9.73926 -9.24181 -9.05304 -8.86524 -8.11543 -6.71681 -5.30646 0.69442 1.49283 2.06682 2.50453 3.08033 3.12586 3.17749 3.72999 4.03609 4.07802 4.30969 4.62960 4.75687 5.03506 5.16913 5.32718 5.40366 5.53877 5.70904 5.84998 5.98709 6.08662 6.21828 6.24707 6.49016 6.64442 6.76228 7.30752 7.35461 7.60784 7.94930 8.20899 8.87599 10.23213 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.017759 B = 0.009163 C = 0.007038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.252609 B = 3055.017068 C = 3977.697789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.422 3.578 3 O -0.463 6.463 4 C 0.090 3.910 5 C -0.164 4.164 6 C -0.057 4.057 7 C -0.189 4.189 8 C 0.399 3.601 9 N -1.045 6.045 10 S 2.698 3.302 11 O -0.999 6.999 12 O -0.972 6.972 13 C -0.996 4.996 14 H 0.100 0.900 15 C 0.136 3.864 16 N -0.846 5.846 17 Si 0.918 3.082 18 H -0.265 1.265 19 H -0.276 1.276 20 H -0.262 1.262 21 N -0.458 5.458 22 H 0.101 0.899 23 H 0.079 0.921 24 H 0.114 0.886 25 H 0.142 0.858 26 H 0.140 0.860 27 H 0.139 0.861 28 H 0.421 0.579 29 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.048 3.049 -0.198 11.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.300 3.700 3 O -0.337 6.337 4 C -0.048 4.048 5 C -0.187 4.187 6 C -0.083 4.083 7 C -0.214 4.214 8 C 0.162 3.838 9 N -0.785 5.785 10 S 2.799 3.201 11 O -0.990 6.990 12 O -0.962 6.962 13 C -1.130 5.130 14 H 0.118 0.882 15 C -0.082 4.082 16 N -0.476 5.476 17 Si 0.742 3.258 18 H -0.190 1.190 19 H -0.201 1.201 20 H -0.187 1.187 21 N -0.176 5.176 22 H 0.119 0.881 23 H 0.098 0.902 24 H 0.132 0.868 25 H 0.160 0.840 26 H 0.158 0.842 27 H 0.157 0.843 28 H 0.255 0.745 29 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 9.551 3.379 0.610 10.149 hybrid contribution 0.914 -0.078 -1.402 1.675 sum 10.465 3.301 -0.792 11.002 Atomic orbital electron populations 1.22177 0.91821 1.05848 1.05466 1.22516 0.92527 0.85730 0.69263 1.90484 1.72708 1.33379 1.37122 1.21402 0.91344 0.92923 0.99092 1.22044 0.94323 0.99543 1.02775 1.21320 1.00337 0.91357 0.95324 1.21852 0.92895 1.00188 1.06476 1.17941 0.88280 0.86064 0.91536 1.54436 1.29815 1.09742 1.84514 1.01180 0.68428 0.73590 0.76893 1.93414 1.76653 1.39364 1.89552 1.93391 1.78338 1.64753 1.59688 1.30165 1.00013 1.57515 1.25318 0.88171 1.24669 0.94744 0.90764 0.98003 1.69878 1.03346 1.39478 1.34902 0.86241 0.77757 0.80314 0.81517 1.19003 1.20121 1.18690 1.67270 1.39694 0.96552 1.14075 0.88080 0.90234 0.86773 0.84003 0.84231 0.84303 0.74543 0.89828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.33 10.02 36.00 0.36 -2.97 15 2 C 0.42 7.31 7.24 -30.53 -0.22 7.09 15 3 O -0.46 -8.24 17.06 5.61 0.10 -8.15 15 4 C 0.09 1.57 6.72 -83.14 -0.56 1.01 15 5 C -0.16 -2.31 9.63 -38.96 -0.38 -2.69 15 6 C -0.06 -0.68 10.16 -39.36 -0.40 -1.08 15 7 C -0.19 -2.52 9.94 -39.07 -0.39 -2.91 15 8 C 0.40 7.25 7.33 -155.23 -1.14 6.11 15 9 N -1.05 -19.97 5.84 31.14 0.18 -19.79 15 10 S 2.70 69.01 4.65 -107.50 -0.50 68.51 15 11 O -1.00 -28.06 18.02 -57.17 -1.03 -29.09 15 12 O -0.97 -27.18 16.89 -57.17 -0.97 -28.14 15 13 C -1.00 -26.35 9.33 30.60 0.29 -26.07 15 14 H 0.10 2.48 7.81 -52.48 -0.41 2.07 15 15 C 0.14 3.65 5.46 -17.82 -0.10 3.56 15 16 N -0.85 -23.96 13.19 55.43 0.73 -23.22 15 17 Si 0.92 20.08 29.54 -169.99 -5.02 15.06 15 18 H -0.27 -5.66 7.11 56.52 0.40 -5.26 15 19 H -0.28 -5.79 7.11 56.52 0.40 -5.39 15 20 H -0.26 -5.54 7.11 56.52 0.40 -5.14 15 21 N -0.46 -9.21 7.39 -9.08 -0.07 -9.28 15 22 H 0.10 1.64 8.14 -51.93 -0.42 1.21 15 23 H 0.08 1.17 8.14 -51.93 -0.42 0.74 15 24 H 0.11 2.25 7.60 -51.93 -0.39 1.86 15 25 H 0.14 1.74 7.63 -52.49 -0.40 1.34 15 26 H 0.14 1.10 8.06 -52.49 -0.42 0.67 15 27 H 0.14 1.36 8.06 -52.49 -0.42 0.94 15 28 H 0.42 6.28 8.82 -34.48 -0.30 5.97 15 29 H 0.29 7.47 8.31 -40.82 -0.34 7.13 15 LS Contribution 282.30 15.07 4.25 4.25 Total: -1.00 -34.46 282.30 -7.19 -41.65 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -2.34 Total: 6.15 kcal Atomic # 6 Polarization: -15.41 SS G_CDS: -2.53 Total: -17.94 kcal Atomic # 7 Polarization: -53.14 SS G_CDS: 0.85 Total: -52.30 kcal Atomic # 8 Polarization: -63.48 SS G_CDS: -1.90 Total: -65.38 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Atomic # 16 Polarization: 69.01 SS G_CDS: -0.50 Total: 68.51 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -34.46 -7.19 -41.65 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192951758.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.023 kcal (2) G-P(sol) polarization free energy of solvation -34.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds