Wall clock time and date at job start Mon Mar 30 2020 00:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21216 * 120.00130 * 2 1 4 4 C 1.47526 * 119.99872 * 180.02562 * 2 1 3 5 5 C 1.39383 * 119.69686 * 179.72736 * 4 2 1 6 6 C 1.38777 * 119.20158 * 179.77121 * 5 4 2 7 7 C 1.38296 * 118.59768 * 0.49539 * 6 5 4 8 8 C 1.39564 * 119.32770 * 359.74691 * 7 6 5 9 9 N 1.38967 * 119.62138 * 179.97438 * 8 7 6 10 10 S 1.65602 * 119.99762 * 180.02562 * 9 8 7 11 11 O 1.42101 * 106.39858 * 178.53755 * 10 9 8 12 12 O 1.42095 * 106.40040 * 311.45950 * 10 9 8 13 13 C 1.76200 * 107.21785 * 64.99787 * 10 9 8 14 14 H 1.08004 * 119.99874 * 0.02562 * 13 10 9 15 15 C 1.37880 * 120.00112 * 179.97438 * 13 10 9 16 16 N 1.31515 * 119.99704 * 0.02562 * 15 13 10 17 17 Si 1.86798 * 120.00009 * 180.02562 * 15 13 10 18 18 H 1.48488 * 109.47371 * 60.00112 * 17 15 13 19 19 H 1.48502 * 109.47023 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47058 * 299.99769 * 17 15 13 21 21 N 1.32003 * 120.74972 * 0.02562 * 8 7 6 22 22 H 1.08999 * 109.47280 * 270.00038 * 1 2 3 23 23 H 1.08997 * 109.47027 * 29.99998 * 1 2 3 24 24 H 1.09000 * 109.47497 * 150.00232 * 1 2 3 25 25 H 1.07994 * 120.40287 * 359.97438 * 5 4 2 26 26 H 1.07997 * 120.69789 * 180.21969 * 6 5 4 27 27 H 1.07996 * 120.33442 * 179.77438 * 7 6 5 28 28 H 0.97001 * 119.99896 * 0.02562 * 9 8 7 29 29 H 0.96999 * 119.99684 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1130 1.0497 0.0000 4 6 2.2445 -1.2776 -0.0006 5 6 3.6383 -1.2703 -0.0063 6 6 4.3218 -2.4781 -0.0020 7 6 3.5910 -3.6522 -0.0025 8 6 2.1968 -3.5896 -0.0020 9 7 1.4565 -4.7657 -0.0031 10 16 -0.1983 -4.7023 -0.0032 11 8 -0.6514 -6.0487 -0.0392 12 8 -0.5648 -3.7860 1.0192 13 6 -0.6922 -3.9702 -1.5279 14 1 0.0537 -3.6632 -2.2461 15 6 -2.0309 -3.7901 -1.8046 16 7 -2.9391 -4.1643 -0.9301 17 14 -2.5544 -3.0146 -3.4213 18 1 -2.0633 -3.8446 -4.5504 19 1 -4.0362 -2.9330 -3.4742 20 1 -1.9800 -1.6491 -3.5242 21 7 1.5734 -2.4261 -0.0016 22 1 -0.3634 0.0000 1.0276 23 1 -0.3633 0.8900 -0.5138 24 1 -0.3634 -0.8900 -0.5138 25 1 4.1799 -0.3360 -0.0108 26 1 5.4015 -2.5006 -0.0027 27 1 4.0942 -4.6078 -0.0029 28 1 1.9090 -5.6236 -0.0038 29 1 -3.8809 -4.0380 -1.1249 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192951758.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:23 Heat of formation + Delta-G solvation = -113.594272 kcal Electronic energy + Delta-G solvation = -18778.940893 eV Core-core repulsion = 15599.827594 eV Total energy + Delta-G solvation = -3179.113299 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.051 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.60245 -39.94140 -37.40186 -36.22448 -36.10949 -35.10597 -33.78005 -31.25542 -30.31937 -28.21372 -25.63430 -24.06323 -21.67027 -20.91106 -19.71202 -18.80231 -18.30958 -17.30331 -17.14573 -16.69472 -16.45259 -16.32881 -15.95878 -15.57757 -15.38213 -14.98360 -14.29509 -13.96746 -13.38886 -13.24557 -13.10143 -12.99777 -12.91470 -12.76703 -12.54419 -12.37242 -12.35239 -12.29045 -11.35913 -11.19739 -10.91592 -10.85311 -10.31037 -9.43948 -8.71099 -7.39240 -0.51072 0.18576 0.36384 1.23450 1.34640 1.36443 1.48644 2.19153 2.41588 2.63083 2.83347 2.92409 3.51381 3.66281 3.90496 4.06413 4.18375 4.19175 4.41253 4.57755 4.63535 4.68776 4.75114 5.14429 5.18658 5.23376 5.31230 5.58962 5.93070 5.96604 6.26507 6.83271 6.96116 8.25519 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.017759 B = 0.009163 C = 0.007038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.252609 B = 3055.017068 C = 3977.697789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.423 3.577 3 O -0.472 6.472 4 C 0.053 3.947 5 C -0.147 4.147 6 C -0.041 4.041 7 C -0.164 4.164 8 C 0.359 3.641 9 N -1.036 6.036 10 S 2.712 3.288 11 O -1.037 7.037 12 O -1.009 7.009 13 C -1.009 5.009 14 H 0.109 0.891 15 C 0.080 3.920 16 N -0.891 5.891 17 Si 0.979 3.021 18 H -0.254 1.254 19 H -0.263 1.263 20 H -0.252 1.252 21 N -0.504 5.504 22 H 0.102 0.898 23 H 0.099 0.901 24 H 0.082 0.918 25 H 0.163 0.837 26 H 0.196 0.804 27 H 0.182 0.818 28 H 0.438 0.562 29 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.895 3.615 -1.338 14.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.302 3.698 3 O -0.347 6.347 4 C -0.082 4.082 5 C -0.169 4.169 6 C -0.067 4.067 7 C -0.189 4.189 8 C 0.123 3.877 9 N -0.784 5.784 10 S 2.813 3.187 11 O -1.027 7.027 12 O -0.998 6.998 13 C -1.144 5.144 14 H 0.127 0.873 15 C -0.133 4.133 16 N -0.523 5.523 17 Si 0.798 3.202 18 H -0.178 1.178 19 H -0.187 1.187 20 H -0.176 1.176 21 N -0.223 5.223 22 H 0.120 0.880 23 H 0.118 0.882 24 H 0.101 0.899 25 H 0.181 0.819 26 H 0.213 0.787 27 H 0.199 0.801 28 H 0.276 0.724 29 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 12.419 3.943 -0.520 13.040 hybrid contribution 0.212 -0.237 -0.996 1.045 sum 12.631 3.706 -1.515 13.250 Atomic orbital electron populations 1.22126 0.92439 1.05219 1.05389 1.22502 0.92420 0.86074 0.68816 1.90464 1.72708 1.33558 1.37996 1.21454 0.92964 0.91949 1.01864 1.22415 0.92854 1.01668 1.00000 1.21935 1.02736 0.89409 0.92590 1.22303 0.90488 1.02926 1.03191 1.18344 0.90133 0.84965 0.94302 1.53589 1.27824 1.11504 1.85471 1.00356 0.69664 0.72332 0.76335 1.93354 1.78766 1.40739 1.89816 1.93336 1.80303 1.65395 1.60787 1.30450 1.00669 1.57373 1.25877 0.87274 1.25776 0.94790 0.90963 1.01767 1.69965 1.04048 1.41125 1.37168 0.85324 0.78162 0.79821 0.76929 1.17768 1.18742 1.17582 1.67025 1.41901 0.97914 1.15432 0.88009 0.88196 0.89873 0.81942 0.78713 0.80070 0.72381 0.89198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.82 10.02 71.23 0.71 -6.11 15 2 C 0.42 14.64 7.24 28.14 0.20 14.85 15 3 O -0.47 -16.39 17.06 -2.83 -0.05 -16.44 15 4 C 0.05 1.82 6.72 41.69 0.28 2.10 15 5 C -0.15 -3.64 9.63 22.67 0.22 -3.42 15 6 C -0.04 -0.75 10.16 22.41 0.23 -0.53 15 7 C -0.16 -3.71 9.94 22.60 0.22 -3.48 15 8 C 0.36 12.58 7.33 133.30 0.98 13.56 15 9 N -1.04 -39.36 5.84 -55.40 -0.32 -39.68 15 10 S 2.71 142.86 4.65 -56.49 -0.26 142.60 15 11 O -1.04 -60.12 18.02 -128.00 -2.31 -62.42 15 12 O -1.01 -58.93 16.89 -128.00 -2.16 -61.09 15 13 C -1.01 -54.56 9.33 67.73 0.63 -53.93 15 14 H 0.11 5.49 7.81 -2.91 -0.02 5.46 15 15 C 0.08 4.38 5.46 84.66 0.46 4.84 15 16 N -0.89 -52.03 13.19 21.45 0.28 -51.75 15 17 Si 0.98 41.02 29.54 68.60 2.03 43.04 15 18 H -0.25 -10.08 7.11 99.48 0.71 -9.37 15 19 H -0.26 -10.37 7.11 99.48 0.71 -9.66 15 20 H -0.25 -10.03 7.11 99.48 0.71 -9.32 15 21 N -0.50 -20.31 7.39 -182.64 -1.35 -21.66 15 22 H 0.10 3.46 8.14 -2.39 -0.02 3.44 15 23 H 0.10 2.96 8.14 -2.39 -0.02 2.94 15 24 H 0.08 3.46 7.60 -2.39 -0.02 3.44 15 25 H 0.16 3.33 7.63 -2.91 -0.02 3.30 15 26 H 0.20 1.52 8.06 -2.91 -0.02 1.50 15 27 H 0.18 2.49 8.06 -2.91 -0.02 2.46 15 28 H 0.44 12.67 8.82 -96.74 -0.85 11.82 15 29 H 0.30 15.72 8.31 -92.71 -0.77 14.95 15 Total: -1.00 -78.71 282.30 0.14 -78.56 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: 0.35 Total: 20.97 kcal Atomic # 6 Polarization: -36.06 SS G_CDS: 3.94 Total: -32.12 kcal Atomic # 7 Polarization: -111.71 SS G_CDS: -1.39 Total: -113.10 kcal Atomic # 8 Polarization: -135.44 SS G_CDS: -4.52 Total: -139.95 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.04 kcal Atomic # 16 Polarization: 142.86 SS G_CDS: -0.26 Total: 142.60 kcal Total: -78.71 0.14 -78.56 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192951758.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.033 kcal (2) G-P(sol) polarization free energy of solvation -78.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds