Wall clock time and date at job start Mon Mar 30 2020 01:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35707 * 116.99852 * 2 1 4 4 N 1.32168 * 119.63080 * 359.97438 * 3 2 1 5 5 C 1.31936 * 122.01603 * 180.02562 * 4 3 2 6 6 C 1.37923 * 121.01719 * 359.74166 * 5 4 3 7 7 C 1.40065 * 119.13846 * 0.50836 * 6 5 4 8 8 C 1.47928 * 120.91269 * 179.77648 * 7 6 5 9 9 O 1.21575 * 119.99888 * 124.35125 * 8 7 6 10 10 N 1.34776 * 120.00226 * 304.08082 * 8 7 6 11 11 C 1.46499 * 119.99586 * 3.81665 * 10 8 7 12 12 C 1.36808 * 120.00160 * 183.81976 * 10 8 7 13 13 H 1.07995 * 120.00245 * 351.41542 * 12 10 8 14 14 C 1.39099 * 119.99777 * 171.41691 * 12 10 8 15 15 N 1.31328 * 119.99823 * 7.64559 * 14 12 10 16 16 Si 1.86799 * 119.99924 * 187.64880 * 14 12 10 17 17 H 1.48498 * 109.47159 * 59.99629 * 16 14 12 18 18 H 1.48499 * 109.46913 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.46897 * 300.00091 * 16 14 12 20 20 C 1.38987 * 119.62558 * 180.02562 * 3 2 1 21 21 Cl 1.73602 * 120.54932 * 359.97438 * 20 3 2 22 22 H 1.09005 * 109.47017 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47502 * 299.99565 * 1 2 3 24 24 H 1.08999 * 109.47338 * 60.00206 * 1 2 3 25 25 H 1.07997 * 119.49061 * 179.97438 * 5 4 3 26 26 H 1.08000 * 120.43364 * 180.26780 * 6 5 4 27 27 H 1.09001 * 109.47352 * 357.13141 * 11 10 8 28 28 H 1.09002 * 109.47376 * 117.13435 * 11 10 8 29 29 H 1.08999 * 109.47313 * 237.13462 * 11 10 8 30 30 H 0.97004 * 119.99571 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0450 1.2092 0.0000 4 7 1.3180 2.3129 -0.0005 5 6 1.8675 3.5124 -0.0010 6 6 3.2381 3.6663 0.0043 7 6 4.0524 2.5266 -0.0006 8 6 5.5268 2.6460 -0.0001 9 8 6.1807 2.0993 0.8668 10 7 6.1457 3.3564 -0.9639 11 6 5.3549 4.0793 -1.9631 12 6 7.5122 3.4025 -1.0090 13 1 8.0936 2.9885 -0.1985 14 6 8.1529 3.9826 -2.0989 15 7 7.4527 4.6181 -3.0103 16 14 10.0092 3.8576 -2.2663 17 1 10.4046 2.4279 -2.3369 18 1 10.4424 4.5533 -3.5047 19 1 10.6561 4.4926 -1.0902 20 6 3.4334 1.2729 -0.0005 21 17 4.3834 -0.1802 -0.0005 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.2343 4.3873 -0.0019 26 1 3.6779 4.6527 0.0081 27 1 4.2952 3.8847 -1.7980 28 1 5.5463 5.1486 -1.8737 29 1 5.6349 3.7423 -2.9612 30 1 7.8995 5.0230 -3.7701 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195189842.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:37 Heat of formation + Delta-G solvation = -36.244143 kcal Electronic energy + Delta-G solvation = -18465.158024 eV Core-core repulsion = 15287.355172 eV Total energy + Delta-G solvation = -3177.802852 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.91768 -40.35674 -38.73704 -37.57856 -36.78352 -34.10535 -33.09553 -31.72981 -28.45970 -28.30534 -26.83296 -24.87912 -24.36770 -21.55596 -19.42626 -18.92974 -18.47568 -17.57612 -17.47067 -17.10624 -16.51139 -16.01552 -15.90165 -15.35636 -15.12554 -14.67109 -14.47431 -13.88308 -13.63415 -13.32304 -13.06166 -12.87147 -12.77550 -12.69203 -12.42465 -12.15300 -12.08720 -12.05418 -11.17793 -11.06153 -10.72071 -10.36756 -9.98548 -9.50917 -8.32994 -5.96265 -0.33129 -0.07079 1.05853 1.37171 1.40953 1.50935 1.75068 2.01993 2.22504 2.52549 2.86196 3.07339 3.27211 3.65624 3.75115 3.97862 4.20341 4.43441 4.48321 4.55563 4.61437 4.77797 4.92903 5.12268 5.18817 5.37829 5.47285 5.93660 6.06020 6.37954 6.57110 7.05565 7.32325 7.87857 8.56815 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.031271 B = 0.005820 C = 0.005282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.180948 B = 4810.085082 C = 5300.177215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.311 6.311 3 C 0.330 3.670 4 N -0.521 5.521 5 C 0.160 3.840 6 C -0.178 4.178 7 C -0.023 4.023 8 C 0.457 3.543 9 O -0.616 6.616 10 N -0.435 5.435 11 C 0.111 3.889 12 C -0.341 4.341 13 H 0.082 0.918 14 C 0.003 3.997 15 N -0.883 5.883 16 Si 0.994 3.006 17 H -0.276 1.276 18 H -0.265 1.265 19 H -0.269 1.269 20 C -0.107 4.107 21 Cl -0.050 7.050 22 H 0.124 0.876 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.222 0.778 26 H 0.163 0.837 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.063 -0.901 0.543 14.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.218 6.218 3 C 0.150 3.850 4 N -0.246 5.246 5 C 0.005 3.995 6 C -0.199 4.199 7 C -0.035 4.035 8 C 0.246 3.754 9 O -0.505 6.505 10 N -0.150 5.150 11 C -0.031 4.031 12 C -0.469 4.469 13 H 0.100 0.900 14 C -0.199 4.199 15 N -0.522 5.522 16 Si 0.817 3.183 17 H -0.201 1.201 18 H -0.189 1.189 19 H -0.194 1.194 20 C -0.138 4.138 21 Cl -0.021 7.021 22 H 0.142 0.858 23 H 0.083 0.917 24 H 0.084 0.916 25 H 0.238 0.762 26 H 0.181 0.819 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.411 -1.513 0.719 14.508 hybrid contribution 1.911 -0.079 -0.112 1.916 sum -12.500 -1.591 0.607 12.615 Atomic orbital electron populations 1.23207 0.74759 1.05066 1.02983 1.86311 1.25215 1.23071 1.87187 1.19296 0.86511 0.86562 0.92610 1.67486 1.39080 0.98541 1.19531 1.23175 0.92043 0.94439 0.89865 1.22466 0.94924 0.98545 1.03954 1.20277 0.94704 0.92806 0.95709 1.17997 0.86625 0.85177 0.85586 1.90607 1.66550 1.52968 1.40340 1.43792 1.06500 1.40231 1.24506 1.22036 0.92104 0.96559 0.92390 1.19756 0.81591 1.39078 1.06432 0.90037 1.26123 1.05061 0.94543 0.94212 1.70188 1.37117 1.32690 1.12176 0.84984 0.76414 0.78563 0.78345 1.20148 1.18878 1.19365 1.20994 0.90114 0.89014 1.13679 1.98355 1.72004 1.34844 1.96884 0.85809 0.91666 0.91605 0.76161 0.81917 0.91975 0.92316 0.91401 0.91270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 10.38 113.37 1.18 1.81 16 2 O -0.31 -9.11 9.95 -90.27 -0.90 -10.01 16 3 C 0.33 10.79 7.49 84.82 0.64 11.42 16 4 N -0.52 -14.24 9.18 -309.07 -2.84 -17.08 16 5 C 0.16 3.73 11.16 84.60 0.94 4.67 16 6 C -0.18 -5.40 7.54 22.64 0.17 -5.23 16 7 C -0.02 -0.95 4.84 -19.88 -0.10 -1.05 16 8 C 0.46 23.37 6.60 86.81 0.57 23.95 16 9 O -0.62 -36.13 15.95 -3.95 -0.06 -36.19 16 10 N -0.43 -22.63 3.02 -662.12 -2.00 -24.63 16 11 C 0.11 4.93 8.21 127.77 1.05 5.98 16 12 C -0.34 -19.18 9.54 84.12 0.80 -18.37 16 13 H 0.08 4.91 7.19 -2.91 -0.02 4.89 16 14 C 0.00 0.17 5.45 84.97 0.46 0.64 16 15 N -0.88 -44.22 9.49 21.69 0.21 -44.02 16 16 Si 0.99 41.43 29.56 68.60 2.03 43.46 16 17 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 18 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 19 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 20 C -0.11 -4.21 6.39 22.83 0.15 -4.07 16 21 Cl -0.05 -2.07 27.18 -2.72 -0.07 -2.14 16 22 H 0.12 1.60 8.14 -2.38 -0.02 1.58 16 23 H 0.06 1.15 8.10 -2.39 -0.02 1.13 16 24 H 0.07 1.16 8.10 -2.39 -0.02 1.14 16 25 H 0.22 2.75 8.06 -2.91 -0.02 2.73 16 26 H 0.16 4.44 7.55 -2.91 -0.02 4.42 16 27 H 0.06 2.30 4.56 -2.39 -0.01 2.29 16 28 H 0.06 2.61 7.54 -2.39 -0.02 2.59 16 29 H 0.07 3.25 6.51 -2.39 -0.02 3.24 16 30 H 0.28 12.92 8.31 -92.71 -0.77 12.15 16 Total: -1.00 -68.93 277.30 3.41 -65.52 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: 1.18 Total: 5.33 kcal Atomic # 6 Polarization: 13.89 SS G_CDS: 5.86 Total: 19.75 kcal Atomic # 7 Polarization: -81.10 SS G_CDS: -4.63 Total: -85.73 kcal Atomic # 8 Polarization: -45.24 SS G_CDS: -0.96 Total: -46.20 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Atomic # 17 Polarization: -2.07 SS G_CDS: -0.07 Total: -2.14 kcal Total: -68.93 3.41 -65.52 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195189842.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.277 kcal (2) G-P(sol) polarization free energy of solvation -68.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds