Wall clock time and date at job start Mon Mar 30 2020 01:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35675 * 117.00267 * 2 1 4 4 C 1.38858 * 120.57075 * 359.97359 * 3 2 1 5 5 N 1.31675 * 120.83854 * 180.02562 * 4 3 2 6 6 C 1.31884 * 122.18793 * 359.97438 * 5 4 3 7 7 C 1.38120 * 121.04969 * 359.72317 * 6 5 4 8 8 Cl 1.73608 * 120.48907 * 180.28803 * 7 6 5 9 9 C 1.40147 * 119.02676 * 0.54700 * 7 6 5 10 10 C 1.47635 * 120.98090 * 179.73139 * 9 7 6 11 11 O 1.21605 * 119.99924 * 269.72549 * 10 9 7 12 12 N 1.34776 * 119.99935 * 89.72480 * 10 9 7 13 13 C 1.46501 * 119.99804 * 359.72969 * 12 10 9 14 14 C 1.36845 * 120.00169 * 180.02562 * 12 10 9 15 15 H 1.08005 * 119.99501 * 338.20305 * 14 12 10 16 16 C 1.39055 * 120.00303 * 158.20649 * 14 12 10 17 17 N 1.31358 * 119.99959 * 344.32173 * 16 14 12 18 18 Si 1.86800 * 120.00185 * 164.32202 * 16 14 12 19 19 H 1.48498 * 109.47036 * 60.00045 * 18 16 14 20 20 H 1.48505 * 109.47261 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.46977 * 299.99785 * 18 16 14 22 22 H 1.09002 * 109.46476 * 60.00263 * 1 2 3 23 23 H 1.09001 * 109.47102 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47120 * 300.00615 * 1 2 3 25 25 H 1.07994 * 119.58146 * 0.02562 * 4 3 2 26 26 H 1.07995 * 119.47657 * 180.02562 * 6 5 4 27 27 H 1.08998 * 109.46674 * 271.98956 * 13 12 10 28 28 H 1.09002 * 109.47112 * 31.99238 * 13 12 10 29 29 H 1.09006 * 109.46958 * 151.99092 * 13 12 10 30 30 H 0.96996 * 120.00152 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 1.3004 2.3809 -0.0006 5 7 1.8928 3.5569 -0.0011 6 6 3.2057 3.6822 -0.0006 7 6 4.0273 2.5720 0.0062 8 17 5.7538 2.7539 0.0143 9 6 3.4468 1.2964 0.0010 10 6 4.2841 0.0804 0.0019 11 8 4.6293 -0.4209 -1.0508 12 7 4.6659 -0.4739 1.1696 13 6 4.2549 0.1335 2.4378 14 6 5.4424 -1.6007 1.1705 15 1 5.4633 -2.2428 0.3023 16 6 6.2045 -1.9190 2.2893 17 7 6.4284 -1.0108 3.2115 18 14 6.9097 -3.6382 2.4807 19 1 7.8100 -3.9340 1.3373 20 1 7.6780 -3.7197 3.7489 21 1 5.8024 -4.6273 2.5077 22 1 -0.3632 0.5138 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 0.2218 2.3273 -0.0006 26 1 3.6453 4.6686 -0.0006 27 1 4.9838 0.8886 2.7319 28 1 3.2771 0.5998 2.3173 29 1 4.1981 -0.6360 3.2077 30 1 6.9597 -1.2330 3.9920 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195232633.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:39 Heat of formation + Delta-G solvation = -47.469427 kcal Electronic energy + Delta-G solvation = -18824.228009 eV Core-core repulsion = 15645.938392 eV Total energy + Delta-G solvation = -3178.289617 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.01792 -40.03982 -39.28066 -37.66901 -36.74912 -34.04336 -33.10419 -31.53291 -28.48900 -28.36029 -27.07404 -25.15801 -24.03433 -21.61859 -19.34887 -18.97068 -18.54774 -18.28031 -17.28251 -16.86728 -16.32396 -16.21465 -15.89912 -15.61111 -15.12880 -14.97621 -14.40653 -13.94241 -13.48280 -13.32795 -13.25904 -13.10963 -12.85092 -12.70319 -12.52462 -12.37599 -12.24295 -12.14935 -11.17500 -11.07343 -10.58563 -10.32268 -9.79375 -9.59044 -8.40650 -6.02463 -0.35538 -0.10417 0.84061 1.35349 1.40302 1.51299 1.81865 2.15686 2.23078 2.43113 2.84266 3.00891 3.35417 3.45706 3.66400 3.88614 3.95750 4.27405 4.39368 4.39694 4.49273 4.73001 4.73438 4.89194 5.15313 5.20384 5.40654 5.98111 6.12235 6.38477 6.59926 7.06181 7.32486 7.89227 8.62767 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.020831 B = 0.007618 C = 0.006291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.839500 B = 3674.593191 C = 4449.571549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.329 6.329 3 C 0.107 3.893 4 C 0.037 3.963 5 N -0.430 5.430 6 C 0.081 3.919 7 C -0.039 4.039 8 Cl -0.044 7.044 9 C -0.109 4.109 10 C 0.489 3.511 11 O -0.625 6.625 12 N -0.431 5.431 13 C 0.131 3.869 14 C -0.349 4.349 15 H 0.074 0.926 16 C 0.004 3.996 17 N -0.886 5.886 18 Si 0.991 3.009 19 H -0.276 1.276 20 H -0.266 1.266 21 H -0.265 1.265 22 H 0.081 0.919 23 H 0.117 0.883 24 H 0.084 0.916 25 H 0.211 0.789 26 H 0.201 0.799 27 H 0.046 0.954 28 H 0.044 0.956 29 H 0.064 0.936 30 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.540 7.620 -0.093 13.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.240 6.240 3 C 0.057 3.943 4 C -0.122 4.122 5 N -0.140 5.140 6 C -0.076 4.076 7 C -0.069 4.069 8 Cl -0.015 7.015 9 C -0.122 4.122 10 C 0.277 3.723 11 O -0.513 6.513 12 N -0.147 5.147 13 C -0.013 4.013 14 C -0.477 4.477 15 H 0.092 0.908 16 C -0.199 4.199 17 N -0.523 5.523 18 Si 0.814 3.186 19 H -0.201 1.201 20 H -0.191 1.191 21 H -0.190 1.190 22 H 0.100 0.900 23 H 0.135 0.865 24 H 0.102 0.898 25 H 0.227 0.773 26 H 0.218 0.782 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.083 0.917 30 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.546 7.920 -0.342 14.005 hybrid contribution 1.232 -1.554 0.075 1.984 sum -10.314 6.366 -0.267 12.124 Atomic orbital electron populations 1.23621 0.74663 1.06436 1.03670 1.86174 1.24980 1.25520 1.87344 1.20179 0.90231 0.87654 0.96192 1.23537 1.02259 0.85118 1.01292 1.67628 1.10540 1.26175 1.09626 1.22955 0.87949 0.97997 0.98664 1.22186 0.87254 0.93679 1.03805 1.98403 1.09171 1.97477 1.96422 1.19863 0.92847 0.94196 1.05250 1.17885 0.85252 0.84910 0.84266 1.90577 1.62539 1.65570 1.32603 1.43571 1.42998 1.23487 1.04630 1.21315 0.96188 0.97984 0.85771 1.19575 1.24628 1.00433 1.03059 0.90813 1.26129 0.95545 1.02964 0.95255 1.70056 1.37101 1.33969 1.11146 0.85042 0.78361 0.77291 0.77922 1.20125 1.19076 1.19017 0.90036 0.86475 0.89756 0.77262 0.78188 0.93500 0.93789 0.91708 0.91276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.82 113.37 1.11 1.29 16 2 O -0.33 -11.12 10.03 -89.92 -0.90 -12.02 16 3 C 0.11 3.70 6.32 22.96 0.15 3.84 16 4 C 0.04 0.95 10.22 84.86 0.87 1.81 16 5 N -0.43 -11.55 10.32 -195.52 -2.02 -13.57 16 6 C 0.08 2.31 10.97 84.66 0.93 3.23 16 7 C -0.04 -1.45 6.38 22.71 0.14 -1.31 16 8 Cl -0.04 -1.69 28.17 -2.72 -0.08 -1.76 16 9 C -0.11 -4.65 3.98 -19.79 -0.08 -4.73 16 10 C 0.49 26.27 5.89 86.72 0.51 26.78 16 11 O -0.62 -38.78 16.79 -4.05 -0.07 -38.85 16 12 N -0.43 -23.62 3.01 -662.43 -1.99 -25.62 16 13 C 0.13 6.23 8.50 127.77 1.09 7.32 16 14 C -0.35 -20.49 9.28 84.11 0.78 -19.71 16 15 H 0.07 4.62 7.41 -2.91 -0.02 4.60 16 16 C 0.00 0.24 5.00 84.96 0.42 0.66 16 17 N -0.89 -47.18 10.81 21.68 0.23 -46.95 16 18 Si 0.99 42.58 29.58 68.60 2.03 44.61 16 19 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 20 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 21 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 22 H 0.08 1.11 7.68 -2.39 -0.02 1.09 16 23 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 24 H 0.08 1.11 7.68 -2.39 -0.02 1.09 16 25 H 0.21 3.31 6.32 -2.91 -0.02 3.29 16 26 H 0.20 4.21 8.06 -2.91 -0.02 4.18 16 27 H 0.05 2.30 7.75 -2.39 -0.02 2.28 16 28 H 0.04 1.84 6.64 -2.39 -0.02 1.82 16 29 H 0.06 3.17 6.85 -2.38 -0.02 3.16 16 30 H 0.28 13.73 8.31 -92.71 -0.77 12.96 16 Total: -1.00 -74.59 281.23 4.31 -70.29 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: 1.18 Total: 4.69 kcal Atomic # 6 Polarization: 13.26 SS G_CDS: 5.92 Total: 19.18 kcal Atomic # 7 Polarization: -82.36 SS G_CDS: -3.78 Total: -86.14 kcal Atomic # 8 Polarization: -49.90 SS G_CDS: -0.97 Total: -50.87 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Atomic # 17 Polarization: -1.69 SS G_CDS: -0.08 Total: -1.76 kcal Total: -74.59 4.31 -70.29 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195232633.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.816 kcal (2) G-P(sol) polarization free energy of solvation -74.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds