Wall clock time and date at job start Mon Mar 30 2020 01:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35949 * 117.00075 * 2 1 4 4 C 1.38846 * 120.38101 * 359.97438 * 3 2 1 5 5 N 1.31899 * 121.04069 * 180.02562 * 4 3 2 6 6 C 1.31783 * 121.92767 * 0.02562 * 5 4 3 7 7 Cl 1.73602 * 119.67841 * 179.97438 * 6 5 4 8 8 C 1.39770 * 120.63933 * 359.97438 * 6 5 4 9 9 C 1.47662 * 120.54599 * 179.97438 * 8 6 5 10 10 O 1.21591 * 120.00271 * 308.54404 * 9 8 6 11 11 N 1.34774 * 119.99805 * 128.54130 * 9 8 6 12 12 C 1.46495 * 120.00078 * 184.33477 * 11 9 8 13 13 C 1.36892 * 120.00171 * 4.33616 * 11 9 8 14 14 H 1.07999 * 119.99564 * 350.63634 * 13 11 9 15 15 C 1.39038 * 120.00105 * 170.63696 * 13 11 9 16 16 N 1.31371 * 119.99971 * 5.54684 * 15 13 11 17 17 Si 1.86798 * 120.00107 * 185.54274 * 15 13 11 18 18 H 1.48499 * 109.46920 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47014 * 119.99869 * 17 15 13 20 20 H 1.48500 * 109.47249 * 240.00421 * 17 15 13 21 21 C 1.38800 * 120.38307 * 180.02562 * 3 2 1 22 22 H 1.08994 * 109.46820 * 60.00171 * 1 2 3 23 23 H 1.09001 * 109.47017 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46694 * 300.00163 * 1 2 3 25 25 H 1.07997 * 119.47901 * 359.74721 * 4 3 2 26 26 H 1.09004 * 109.47245 * 3.74885 * 12 11 9 27 27 H 1.09009 * 109.47614 * 123.75090 * 12 11 9 28 28 H 1.08998 * 109.47122 * 243.74906 * 12 11 9 29 29 H 0.96998 * 120.00149 * 180.02562 * 16 15 13 30 30 H 1.08002 * 120.87620 * 359.94828 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2978 2.3808 -0.0005 5 7 1.8830 3.5628 -0.0010 6 6 3.1946 3.6911 -0.0016 7 17 3.9032 5.2759 -0.0029 8 6 4.0206 2.5636 -0.0011 9 6 5.4900 2.7097 -0.0022 10 8 6.0295 3.4220 -0.8269 11 7 6.2331 2.0536 0.9108 12 6 7.6805 2.2718 0.9708 13 6 5.6355 1.1832 1.7821 14 1 4.5583 1.1336 1.8420 15 6 6.4152 0.3632 2.5900 16 7 7.7218 0.4991 2.5973 17 14 5.6049 -0.9317 3.6652 18 1 4.1328 -0.8812 3.4765 19 1 6.1074 -2.2762 3.2847 20 1 5.9301 -0.6665 5.0897 21 6 3.4318 1.2932 -0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 0.2194 2.3216 -0.0051 26 1 7.9621 3.0408 0.2514 27 1 7.9581 2.5940 1.9745 28 1 8.1981 1.3430 0.7312 29 1 8.2659 -0.0732 3.1606 30 1 4.0398 0.4006 -0.0001 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199262644.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:36 Heat of formation + Delta-G solvation = -38.371240 kcal Electronic energy + Delta-G solvation = -18636.998294 eV Core-core repulsion = 15459.103204 eV Total energy + Delta-G solvation = -3177.895090 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.92814 -40.32232 -39.00694 -37.47754 -36.82496 -33.99994 -33.30223 -31.42670 -28.74365 -28.18351 -26.77832 -24.92154 -24.13354 -21.36127 -20.01391 -18.70919 -18.26700 -17.99388 -17.71307 -16.83406 -16.26223 -16.11658 -15.80767 -15.25494 -15.07102 -14.83511 -14.43722 -13.96412 -13.61216 -13.39822 -12.98262 -12.85789 -12.78570 -12.68728 -12.41383 -12.19401 -12.09651 -12.06384 -11.13083 -11.09675 -10.71147 -10.31274 -10.00815 -9.43340 -8.30806 -5.95853 -0.36625 -0.01883 0.82271 1.37661 1.44818 1.57883 1.83199 2.16782 2.23296 2.46535 2.82054 3.10426 3.42715 3.48907 3.75899 3.98938 4.24007 4.43154 4.46937 4.55987 4.80188 4.82088 4.86174 5.13100 5.14050 5.36386 5.38220 5.66263 6.15147 6.32696 6.49568 6.99799 7.42532 7.83030 8.63159 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.014245 B = 0.009602 C = 0.006275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.110412 B = 2915.510265 C = 4461.255479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 O -0.317 6.317 3 C 0.087 3.913 4 C 0.048 3.952 5 N -0.454 5.454 6 C 0.147 3.853 7 Cl -0.027 7.027 8 C -0.094 4.094 9 C 0.474 3.526 10 O -0.618 6.618 11 N -0.436 5.436 12 C 0.135 3.865 13 C -0.354 4.354 14 H 0.112 0.888 15 C -0.002 4.002 16 N -0.891 5.891 17 Si 0.990 3.010 18 H -0.255 1.255 19 H -0.272 1.272 20 H -0.277 1.277 21 C -0.074 4.074 22 H 0.077 0.923 23 H 0.126 0.874 24 H 0.074 0.926 25 H 0.213 0.787 26 H 0.037 0.963 27 H 0.055 0.945 28 H 0.064 0.936 29 H 0.274 0.726 30 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.180 -3.093 -1.032 14.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 O -0.229 6.229 3 C 0.038 3.962 4 C -0.111 4.111 5 N -0.165 5.165 6 C -0.018 4.018 7 Cl 0.002 6.998 8 C -0.100 4.100 9 C 0.262 3.738 10 O -0.508 6.508 11 N -0.151 5.151 12 C -0.008 4.008 13 C -0.481 4.481 14 H 0.130 0.870 15 C -0.205 4.205 16 N -0.530 5.530 17 Si 0.813 3.187 18 H -0.179 1.179 19 H -0.198 1.198 20 H -0.202 1.202 21 C -0.101 4.101 22 H 0.095 0.905 23 H 0.144 0.856 24 H 0.093 0.907 25 H 0.229 0.771 26 H 0.055 0.945 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -14.049 -2.172 -1.294 14.275 hybrid contribution 0.687 -0.877 0.613 1.271 sum -13.362 -3.048 -0.681 13.722 Atomic orbital electron populations 1.23599 0.75217 1.06617 1.03226 1.86147 1.24437 1.24361 1.87960 1.19831 0.91938 0.87059 0.97350 1.23474 1.02086 0.84744 1.00788 1.66912 1.09199 1.28282 1.12157 1.21443 0.89554 0.87046 1.03732 1.98373 1.81848 1.23061 1.96542 1.20390 0.95008 0.92915 1.01721 1.17778 0.86313 0.85174 0.84507 1.90625 1.73002 1.45537 1.41588 1.43887 1.07578 1.35706 1.27903 1.21444 0.79873 0.99796 0.99699 1.20304 0.94010 1.15680 1.18121 0.87033 1.26226 0.95895 0.99779 0.98582 1.70296 1.05239 1.38635 1.38810 0.84896 0.79110 0.77388 0.77334 1.17896 1.19766 1.20247 1.21163 0.93040 0.97237 0.98706 0.90462 0.85579 0.90748 0.77090 0.94457 0.92667 0.91754 0.91587 0.82834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.82 113.37 1.11 1.20 16 2 O -0.32 -7.85 10.51 -92.98 -0.98 -8.83 16 3 C 0.09 2.60 6.70 22.55 0.15 2.76 16 4 C 0.05 1.32 10.21 84.83 0.87 2.18 16 5 N -0.45 -15.75 10.32 -185.19 -1.91 -17.66 16 6 C 0.15 6.01 7.30 85.07 0.62 6.63 16 7 Cl -0.03 -1.09 27.43 -2.72 -0.07 -1.16 16 8 C -0.09 -4.13 5.02 -19.99 -0.10 -4.23 16 9 C 0.47 24.17 6.66 86.73 0.58 24.74 16 10 O -0.62 -34.08 15.35 -4.00 -0.06 -34.14 16 11 N -0.44 -22.70 3.02 -662.40 -2.00 -24.70 16 12 C 0.13 6.88 8.87 127.77 1.13 8.01 16 13 C -0.35 -17.71 8.37 84.10 0.70 -17.00 16 14 H 0.11 5.31 5.09 -2.91 -0.01 5.29 16 15 C 0.00 -0.10 5.46 84.95 0.46 0.36 16 16 N -0.89 -45.15 9.48 21.68 0.21 -44.94 16 17 Si 0.99 38.07 29.56 68.60 2.03 40.10 16 18 H -0.26 -9.33 7.11 99.48 0.71 -8.62 16 19 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 20 H -0.28 -10.55 7.11 99.48 0.71 -9.84 16 21 C -0.07 -2.84 7.55 22.84 0.17 -2.67 16 22 H 0.08 0.72 7.67 -2.39 -0.02 0.70 16 23 H 0.13 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.07 0.75 7.68 -2.39 -0.02 0.73 16 25 H 0.21 3.50 6.30 -2.91 -0.02 3.48 16 26 H 0.04 1.87 6.93 -2.39 -0.02 1.85 16 27 H 0.05 2.87 7.24 -2.38 -0.02 2.85 16 28 H 0.06 3.35 6.87 -2.39 -0.02 3.34 16 29 H 0.27 12.97 8.31 -92.71 -0.77 12.20 16 30 H 0.15 6.04 7.18 -2.91 -0.02 6.02 16 Total: -1.00 -63.96 274.36 4.10 -59.86 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: 1.19 Total: 9.49 kcal Atomic # 6 Polarization: 16.28 SS G_CDS: 5.70 Total: 21.98 kcal Atomic # 7 Polarization: -83.59 SS G_CDS: -3.71 Total: -87.29 kcal Atomic # 8 Polarization: -41.93 SS G_CDS: -1.04 Total: -42.97 kcal Atomic # 14 Polarization: 38.07 SS G_CDS: 2.03 Total: 40.10 kcal Atomic # 17 Polarization: -1.09 SS G_CDS: -0.07 Total: -1.16 kcal Total: -63.96 4.10 -59.86 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199262644.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.484 kcal (2) G-P(sol) polarization free energy of solvation -63.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds